Sed0001957 (gene) Chayote v1

Overview


Name	Sed0001957
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein 3, chloroplastic-like
Location	LG06: 38692968 .. 38698205 (+)
RNA-Seq Expression	Sed0001957
Synteny	Sed0001957

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCCATGGCGGTTCAGGTTCAGCCCAGCGTGAATTTCTGTGTCAATGCCTCCATTTTCTGCTCCCAAACCGCCAGTTCTAAACCTTTCGGAGTCCATTTTGGATTGAAGCAAAGTACCACCAATTTCTGTTCCTCGATTTCGGACTTGCATTCTGTTTGTGGATTCAAATCGAGGCGCCAAAACCAAGTCTCTGCTTCCGCTGTTGATGCTGCTCCGGAATCGCTCGAGTCCTCGCCTATTAACCAGGTCCTTCTTTCGCCCCTCTTTGTTTCTCATGTGCCTGTTCCGTTTGTTTTCTATTGTTGAAATAAACTTGGAGCAGATCTTGGGCAGGTTTAGTACAACAGATAATGTTGTTGCTTTTGTTTGGTGGATTGATTGAGAGAGGGACGGCTTCAAATGGTGAATTTGGTTTTCGATTGCTTCTAATCTAAACTTGCTGTTTCCATTGGAACTGCAAAATGAAAAGAGCAATACTTACCAACACATGAATGTATAGGGTGAGTATGTTTGTTGTCTATGTGGCACAAGGGTTAACCACGCCCGTCCCTAGGCTAGACACCGGAAGAAAACGAAGGCCTTTAGGAGAACATACCCTCAAAGCCCAAGTCTTCAACCACTGTGCCACTCTTTGGGGACGGTTCATTCACTAAAATTATTATGGGGTATTTTTAGGAGCGGACTAAATTGGAAAAATATTTATAATACTAGACAAAAAAAAAAAGAAAAAGAAAAGATTTATCAATCATAGTCATGCCGTACACAAATTATATGGTATAATCAATACTTAATACTATCAATAAACAATACTCTACTAATAGCATATAATATTGTATTAATAATACATAACAATGTATTAAACAGTACAAAATACTGTATTAATATCCTAAATTGTACCGTATGATGAATATTAATTATACCGTATATTTGACTATAAATGCAAATAGTTTCATAATTTGCCTAGATCTGCAATTATTTTGGGAAATTAGACTATCCACCGCAATTTCCCAATTATTATCCATACAAAAAGGATACAAATTTTGGTATAAACGAATAACTACGCTGTACTCAGTTACACCGTAAATAAGTTCTCATGAGAATGTTTTTTTTTTGGGACAACTGCCCTACTCTATTATCTTTGGTTGTCAAAAAAATTCATAGTAAATTAATTTCTAATTCGTGGTCATCGGTGGCCATGGATTGTACTCATAATCTCTTAGTTCTTTAGACCATCTTAGCCACTAGGTCAATCCTTTCCAAGATGGTTAGTTCTAATGAGAATGCAAGATGGTTAGTTCTAATGAGAATGTTGATGTTGATGTTGATTTTCATGCATACCTAAATGTTTATGAAATTTAAATCAGCCCATGGAAGAAGGTTCACCCTGTATAGCTGGATGATGAAGCCAGCTTCAACCTTAAAATGTTAATTTCATTTATGTAACTGGCAGCGTGGCCTTGTTGCAACAATCCACTGAGAAAGGCCTTTGTCGCTCACATTCTTATTAAGGCGAACTTTAAGTTTGGAAAAACAAAAAAATTCTGAATTCATACCTCCTATAGTCCTATTGGCTGGGTTACTATTCCTTCTAAGTTTATGATCAAATGTATGTTTTCTTGTGATGGGAGTTGGGATGTAACTTTTGTGAATACTCATGTTTATTGTCGTCTTGAGCATTTGTTTCGGTGTTCATTTGAGTACTATTTGGTTGTTTGACTTTGGCATTTGGGCGTGTTATCCTCGAGTTTTGAACAGAGTAACTGACATTTGGGTTTCCTTTTTTTTTTTAACGGAATTTTGAGTGAATTATTTTCTGTTGTTTTTAGCAAAATTTTGAGTTGGATTGAATTTCACTAATTACTCAGATTTAAAATTCAATTGGATAAAAATTAACTTGACTAATCAATGTAGATGTTGGATTTTGTTCTTGTCCACTCTTGAAGGGATGTTTTTTTGCTTGCTGTTTTGGTATGCCTAAGTCAAGTCTATGAAGTCTACAATTAAGAAGCTTGTACGTTTAATTTGCGAAGGAATGTGTGTTTTAAATCTTGGTATGCGAAAGTGTGTTTAGTTGACCACAAATGGTTGTTTCATAAGTTTTTTTTTATATGACCTGAGAACTTGGAGTTTTGCTCCTCTAACCCTTGGGCACCTAGCCCAGCCTAGATTGTATTGCTTGAATACAGCGTATGACTGGAAGCGAAATTGGAGTTGCCTGAGAAATTAATCCCACAACTGCCTTGAATCTGAAAGTCTGAGACCTTAAGGGGAGCACACCCTCAAGGACCAGACACTCGACCATTACGCCACCCCTAGGGGACTTATGTAACCTAAGTTCATGCCATTTGTGGAAGGTTATACAATAAAATATTTAGAACAATGATAGAATCTACCACACTTTTCTATTAAAATAAGATAAATCTCCCGAGAGGATCTCTCTAAGAGCCAGAGTACAAAATACGACAATTCAATGGATGATTAACAAAGACCTAACCTCACCTATTTATAATAACTCTAAACCCTAATTGGACCTAATTAATAAAATACTAATAATAGGCCCAAGCCCAATACATTTAAAATAACAAATAACTAATAATAAATACTAATATTTCTAAACTGCCAAGGCCGGATCGTATCAATACTTTCCCCCCCAAGAGCCACCTTGTCCTCAAGGTGTTCCATCTCCGATGCCACCTTCTGCAGCTCCATCTTCTGGAGAAAAGTCAGTCACCTCAACATCCTGGTAATCGTGCGCATCACGAACGACCCACACATCCAAATTCTGAAGCTCTTTCTTCTCCTCCCCACCCGAAATCTCGTCCCCTGTTTCGTACATTGTCACTCCACCCCCGATCGCTCCAAGGTTCTCCTCGTGGGCCAAAATCTGTCCCCGTGCAAGTATCCCCTACAAAATTCCCACGAAATTCCACCCTCCGATCTAACTGACGGCCCACTCTCGACCCGGTCCGCCTGCGTGCGCACCCGCCCCACCCTCGCTCGGACCACCGCGCGCCGCTGCTCGGCCCGTCCCCAACCAGTGACTCCGCCCGAGCCGAAACCCCTCTCGCGCTCGCCCAGACCCACGCCCAGGCCAGCGCCCGGACCCCCCGAGCAACCTCGCCCCCCGGCGCTGCTCCACGCCCGCTCGTCCAAGCCCACCCTCGGACCACCCCAGCGGTACCTCGCGCCCCTCGCGCGCCCGGCCTTCACCGCACACCCTCATGCCCTCGCGCCAACCTCGCTCGCCGGACCGCACCTCCTCGCCTGACACCCCGCGACCCGACAAGACGTCGCGCGCCCGCGCCCCGCTCGAGCCCGGCCCTCGCGCGCACCACCCGCCGCACCAGCCCCTCTCTCTGCATACGCGCCGCCGACCGACCAGCCCGGTAGCCCCTCTCGGACAGACCTGCCGCCGCTCGCCTGCTAAGCGTCGCCCACGCGCCGGTCGCCAAAGCCGATGCCCCACCGCGGCCCCGACATCACCACTCGCCCCGTTGCTCCGCGCGCGCTCGCGCCTGCGCAGCCCACTCCGAGCCGGCGTCGCGCGCCCGTGACTCGCCTCGACCCACCACTGCGCGCGACCTCGTCGCGCCGCTGCTCACCCACGCCCGCCCGCCACCGCCTCGCATCATCACCAGGGCTAGCCCCAGCCGCGCCGCTCGATCCTTCCCCTGCAGCCTCGGGCATCGAGCCCTTCCCCTTGTCTGCTCGGATTGTCTCCACTAAAAGTTCCAGATTTCGGTTCATCGTCTCGAGCTTCGAATCCTGCAAATCCAGCCTTTTCCCTAACCTTTCTTCCATCGCTTCCATCTTCGCATTAGTCTCCTGTAACTGCCTAGCCAAGTCGGCCGTTCCTTCTTCACACGCTTGCATCCTGGATTCCATCTTAGTAGTAACCATTCCCGGATCGGCAAACGGCTCTGATACCAAAATGATAGAATCTACCACACTTTTCTATTAAAATAAGATAAATCTCCCGAGAGGATCTCTCTAAGAGCCAGAGTACAAAATACGACAATTCAATGGATGATTAACAAAGACCTAACCTCACCTATTTATAATAACTCTAAACCCTAATTGGACCTAATTAATAAAATACTAATAATAGGCCCAAGCCCAATACATTTAAAATAGCAAATAACTAATAATAAATACTAATATTCCTAAACTGCCAAGGCCGGATCGTATCAAACAACTCTAAGGATATTTGTTATTTTAATTATAACAATGGAATTTCTAGGGAGAAAGTCAGCATGTGTGCCATCCGGCATGGTCTTTGGGGGAGAGAAACAATAGATTTTTTAGAGGAGTGAAAGGATCGGTTGATGGTATGAGTCCTTATTAGTTCTATGTCCTTGGTTTCTAAGCATTTTTGTAATTATATTTAGGCATTATTTTACTTGATTGGAGGCCATTTTCTTAGGAAAGCCTCCCCTTCTTTTTGCAGGCTATTGTTTTATTCACCCTTTATTTTGTATGTTCTTTCATTCTTTTCTCTATAAAAGCTTGGTTAATTATTAAAAAAAGGTGTCCCCTCGGGGTGGCACAATGGTCGAGCGCTTGGGCTTGGAGGGTGGGCTCTCCTTGCGGTCCCAAGTTCGAGGCGGCTATGAGGGTTAATTTCTCAGGCGATCCCAAATTTTTCCTCCATTCCTACGTTGTCTCCCAGTGTCTGGTTTAGGGACAGGTGTGGTTATCCCGAGTATAGGGTAGTGAAGCTCCTATTTCCCGGTTTAATAAAAAAAGGTGTTATTTTAATTTTTAATATTTACCACCGAGAAAACTTGTATACTGAAAGTAGAACAATAAGAATTTCTTTGCTATAGTGGAACTTGGGATTTTGATTTTGTAGTTCCCTTTTTCTTGGACTAACGAAATGTTGCACAAACAAAATTTATCAGGAAGGCTTTGTCTTACAAACTAAATGTTAATTGTTTTTTGATGTTGTAGAAACTTGGAGTGAATGTAAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTCGTGTGGATGGAAAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCTCGTATTACTTCTGGCCTCGAAAAGATGCATGGGAAGAACTCAAAGTCTTACTCGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTTAATCAGGCAACTGATATCATCAATTTGTGGCAGCAGGGTGGTGGCAACCTGGCTTAA

mRNA sequence

ATGTCATCCATGGCGGTTCAGGTTCAGCCCAGCGTGAATTTCTGTGTCAATGCCTCCATTTTCTGCTCCCAAACCGCCAGTTCTAAACCTTTCGGAGTCCATTTTGGATTGAAGCAAAGTACCACCAATTTCTGTTCCTCGATTTCGGACTTGCATTCTGTTTGTGGATTCAAATCGAGGCGCCAAAACCAAGTCTCTGCTTCCGCTGTTGATGCTGCTCCGGAATCGCTCGAGTCCTCGCCTATTAACCAGAAACTTGGAGTGAATGTAAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTCGTGTGGATGGAAAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCTCGTATTACTTCTGGCCTCGAAAAGATGCATGGGAAGAACTCAAAGTCTTACTCGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTTAATCAGGCAACTGATATCATCAATTTGTGGCAGCAGGGTGGTGGCAACCTGGCTTAA

Coding sequence (CDS)

ATGTCATCCATGGCGGTTCAGGTTCAGCCCAGCGTGAATTTCTGTGTCAATGCCTCCATTTTCTGCTCCCAAACCGCCAGTTCTAAACCTTTCGGAGTCCATTTTGGATTGAAGCAAAGTACCACCAATTTCTGTTCCTCGATTTCGGACTTGCATTCTGTTTGTGGATTCAAATCGAGGCGCCAAAACCAAGTCTCTGCTTCCGCTGTTGATGCTGCTCCGGAATCGCTCGAGTCCTCGCCTATTAACCAGAAACTTGGAGTGAATGTAAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTCGTGTGGATGGAAAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCTCGTATTACTTCTGGCCTCGAAAAGATGCATGGGAAGAACTCAAAGTCTTACTCGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTTAATCAGGCAACTGATATCATCAATTTGTGGCAGCAGGGTGGTGGCAACCTGGCTTAA

Protein sequence

MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTTNFCSSISDLHSVCGFKSRRQNQVSASAVDAAPESLESSPINQKLGVNVKPMEKPRLVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA

Homology

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BLAST of Sed0001957 vs. NCBI nr
Match: XP_038875586.1 (30S ribosomal protein 3, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-66
Identity = 139/193 (72.02%), Postives = 153/193 (79.27%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTTNFCSSISDLHSVCGFKSR 60
           M SMAVQ+QP+VNFC N S F +QTA+SKPF V F +KQ +T+  S I++LHSV   K R
Sbjct: 2   MLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTS-SSCITNLHSVSASKLR 61

Query: 61  RQN---------QVSASAVDAAPESL-------ESSPINQKLGVNVKPMEKPRLVLKFVW 120
            QN           +A A +AAPESL       ESSP+ +KLGV VKPMEKPRLVLKF+W
Sbjct: 62  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 121

Query: 121 MEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 178
           MEKNIGIALDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 122 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 181

[Close]

BLAST of Sed0001957 vs. NCBI nr
Match: XP_023522262.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 1.8e-63
Identity = 139/200 (69.50%), Postives = 153/200 (76.50%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTT-------NFCSSISDLHS 60
           M SMAVQ+QP+VNFC+N S F S  A+SKP+ V F LKQ TT       +  S I+D++S
Sbjct: 2   MLSMAVQLQPNVNFCLNTSTFSSHNATSKPYQVPFSLKQRTTALSSPSSSISSCIADVYS 61

Query: 61  VCGFKSRRQN----QVSASAVDA-----------APESL-ESSPINQKLGVNVKPMEKPR 120
           V G K RRQ+    QVSASA  A           A +SL ESSP  +KLGV VKPMEKPR
Sbjct: 62  VSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPR 121

Query: 121 LVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMII 178
           LVLKF+WMEKNIGI LDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMII
Sbjct: 122 LVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMII 181

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BLAST of Sed0001957 vs. NCBI nr
Match: XP_008461583.1 (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 3.1e-63
Identity = 138/193 (71.50%), Postives = 149/193 (77.20%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTTNFCSSISDLHSVCGFKSR 60
           M SMAVQ+QP+V+FC N S F +Q A SKPF + F +KQ TT   S I + HSV G K R
Sbjct: 2   MLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTT-ASSCIPNFHSVFGLKLR 61

Query: 61  RQN---------QVSASAVDAAPESL-------ESSPINQKLGVNVKPMEKPRLVLKFVW 120
           RQN          VS  AV+AA ESL        SSP+ +KLGV VKPMEKPRLVLKF+W
Sbjct: 62  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 121

Query: 121 MEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 178
           MEKNIGIALDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 122 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 181

[Close]

BLAST of Sed0001957 vs. NCBI nr
Match: XP_022997676.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-62
Identity = 138/200 (69.00%), Postives = 152/200 (76.00%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQST-------TNFCSSISDLHS 60
           M SMAVQ+QP+VNFC+N S F S  A+SKP  V F LKQ T       ++  S I+D++S
Sbjct: 2   MLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVYS 61

Query: 61  VCGFKSRRQN----QVSASAVDA-----------APESL-ESSPINQKLGVNVKPMEKPR 120
           V G K RRQ+    QVSASA  A           A +SL ESSP  +KLGV VKPMEKPR
Sbjct: 62  VSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPR 121

Query: 121 LVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMII 178
           LVLKF+WMEKNIGI LDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMII
Sbjct: 122 LVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMII 181

[Close]

BLAST of Sed0001957 vs. NCBI nr
Match: XP_004145640.2 (30S ribosomal protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-62
Identity = 137/193 (70.98%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTTNFCSSISDLHSVCGFKSR 60
           M SMAVQ+QP+VNFC N S F +QTA SKPF + F ++Q TT   S I + H+V G + R
Sbjct: 23  MLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTT-ASSCIPNFHTVFGLQLR 82

Query: 61  RQN----QVSAS-----AVDAAPESL-------ESSPINQKLGVNVKPMEKPRLVLKFVW 120
           RQN    ++SAS     AV+AA E L        SSP+ +KLGV VKPMEKPRLVLKF+W
Sbjct: 83  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 142

Query: 121 MEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 178
           MEKNIGIALDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 143 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 202

[Close]

BLAST of Sed0001957 vs. ExPASy Swiss-Prot
Match: P82412 (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-46
Identity = 103/188 (54.79%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 4   MAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTTNFCSSISDLHSVCGFKSRRQN 63
           +++ VQP++N     SI+ S   S KPF         T  F +      S    + +++N
Sbjct: 2   LSMAVQPNINAIAKPSIYQSPKLSLKPF--------KTPAFANPKPFFSSPSFSQLKKKN 61

Query: 64  QVSASAVDAAPESLESSPI--------------NQKLGVNVKPMEKPRLVLKFVWMEKNI 123
             S   +  APE++    I               +KL V VKPM+KPRLVLKF+WMEKNI
Sbjct: 62  NWS---LFVAPETISDVAIMGNEVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEKNI 121

Query: 124 GIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLW 178
           G+ALDQ IPGHGT+PLS YYFWPRKDAWEELKVLLE+KPWISQKQMIILLNQATDIINLW
Sbjct: 122 GLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIINLW 178

[Close]

BLAST of Sed0001957 vs. ExPASy Swiss-Prot
Match: Q9SX22 (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-38
Identity = 87/156 (55.77%), Postives = 102/156 (65.38%), Query Frame = 0


Query: 40  STTNFCSSISDLHSVCG-------FKSRRQNQVSAS---AVDAAPESLESSPIN------ 99
           S+T+ CSS    H           F ++    +S        AAPE+L +  +       
Sbjct: 8   SSTSLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTGIDTSD 67

Query: 100 ---QKLGVNVKPMEKPRLVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEEL 159
              Q+    VKP EK R+VLKFVWMEKNIG+ LDQ +PGHGTIPLS Y+FWPRKDAWEEL
Sbjct: 68  NTPQQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEEL 127

Query: 160 KVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 177
           K  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 128 KSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of Sed0001957 vs. ExPASy Swiss-Prot
Match: Q9LFV0 (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-38
Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 74  PESLESSPI-NQKLGVNVKPMEKPRLVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWP 133
           PES ES P+  +K+ V VKP+EKP++VLKFVWM+K+IG+ALD MIPG GTIPLS YYFWP
Sbjct: 80  PES-ESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWP 139

Query: 134 RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 178
           RKDAWEELK LLESKPWIS+   + LLNQATDIINLWQ  GG+L+
Sbjct: 140 RKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183

[Close]

BLAST of Sed0001957 vs. ExPASy Swiss-Prot
Match: O48609 (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.8e-37
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 83  NQKLGVNVKPMEKPRLVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKV 142
           +++  V V   + P LVLKF+WMEKNIGIALDQM+PG G+IPLS YYFWPRKDAWEEL+ 
Sbjct: 86  SEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRA 145

Query: 143 LLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 178
            LE K WISQKQMIILLNQATDIINLWQQGGG+L+
Sbjct: 146 KLEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of Sed0001957 vs. ExPASy Swiss-Prot
Match: P51351 (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-22
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 97  RLVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMI 156
           +  LK +W+E NI IA+DQ++ G+GT PL+SY+FWPR DAWEELK  LESKPWI+++  I
Sbjct: 3   KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 62

Query: 157 ILLNQATDIINLWQQGG 174
            LLN+ T++IN WQ+ G
Sbjct: 63  ELLNKTTEVINYWQEEG 78

[Close]

BLAST of Sed0001957 vs. ExPASy TrEMBL
Match: A0A1S3CF24 (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.5e-63
Identity = 138/193 (71.50%), Postives = 149/193 (77.20%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTTNFCSSISDLHSVCGFKSR 60
           M SMAVQ+QP+V+FC N S F +Q A SKPF + F +KQ TT   S I + HSV G K R
Sbjct: 2   MLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTT-ASSCIPNFHSVFGLKLR 61

Query: 61  RQN---------QVSASAVDAAPESL-------ESSPINQKLGVNVKPMEKPRLVLKFVW 120
           RQN          VS  AV+AA ESL        SSP+ +KLGV VKPMEKPRLVLKF+W
Sbjct: 62  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 121

Query: 121 MEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 178
           MEKNIGIALDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 122 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 181

[Close]

BLAST of Sed0001957 vs. ExPASy TrEMBL
Match: A0A6J1K853 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492568 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.5e-63
Identity = 138/200 (69.00%), Postives = 152/200 (76.00%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQST-------TNFCSSISDLHS 60
           M SMAVQ+QP+VNFC+N S F S  A+SKP  V F LKQ T       ++  S I+D++S
Sbjct: 2   MLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVYS 61

Query: 61  VCGFKSRRQN----QVSASAVDA-----------APESL-ESSPINQKLGVNVKPMEKPR 120
           V G K RRQ+    QVSASA  A           A +SL ESSP  +KLGV VKPMEKPR
Sbjct: 62  VSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPR 121

Query: 121 LVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMII 178
           LVLKF+WMEKNIGI LDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMII
Sbjct: 122 LVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMII 181

[Close]

BLAST of Sed0001957 vs. ExPASy TrEMBL
Match: A0A0A0L9T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.5e-63
Identity = 137/193 (70.98%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTTNFCSSISDLHSVCGFKSR 60
           M SMAVQ+QP+VNFC N S F +QTA SKPF + F ++Q TT   S I + H+V G + R
Sbjct: 23  MLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTT-ASSCIPNFHTVFGLQLR 82

Query: 61  RQN----QVSAS-----AVDAAPESL-------ESSPINQKLGVNVKPMEKPRLVLKFVW 120
           RQN    ++SAS     AV+AA E L        SSP+ +KLGV VKPMEKPRLVLKF+W
Sbjct: 83  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 142

Query: 121 MEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 178
           MEKNIGIALDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 143 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 202

[Close]

BLAST of Sed0001957 vs. ExPASy TrEMBL
Match: A0A5D3CJH0 (30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00620 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 8.3e-62
Identity = 136/190 (71.58%), Postives = 146/190 (76.84%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTTNFCSSISDLHSVCGFKSR 60
           M SMAVQ+QP+V+FC N S F +Q A SKPF + F +KQ TT   S I + HSV G K R
Sbjct: 2   MLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTT-ASSCIPNFHSVFGLKLR 61

Query: 61  RQN---------QVSASAVDAAPESL----ESSPINQKLGVNVKPMEKPRLVLKFVWMEK 120
           RQN          VS  AV+AA ESL      S  + KLGV VKPMEKPRLVLKF+WMEK
Sbjct: 62  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPKLGVVVKPMEKPRLVLKFIWMEK 121

Query: 121 NIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIIN 178
           NIGIALDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIIN
Sbjct: 122 NIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIIN 181

[Close]

BLAST of Sed0001957 vs. ExPASy TrEMBL
Match: A0A6J1GBD3 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111452451 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.4e-61
Identity = 135/200 (67.50%), Postives = 150/200 (75.00%), Query Frame = 0


Query: 1   MSSMAVQVQPSVNFCVNASIFCSQTASSKPFGVHFGLKQSTT-------NFCSSISDLHS 60
           M SMAV + P+ NFC+N S F S  A+SKP+ + F LKQ TT       +  S I+D++S
Sbjct: 2   MLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTALSSPSSSISSCIADVYS 61

Query: 61  VCGFKSRRQN----QVSASAVDA-----------APESL-ESSPINQKLGVNVKPMEKPR 120
           V G K RRQ+    QVSASA  A           A +SL ESSP  +KLGV VKPMEKPR
Sbjct: 62  VSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKPR 121

Query: 121 LVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMII 178
           LVLKF+WMEKNIGI LDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMII
Sbjct: 122 LVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMII 181

[Close]

BLAST of Sed0001957 vs. TAIR 10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-39
Identity = 87/156 (55.77%), Postives = 102/156 (65.38%), Query Frame = 0


Query: 40  STTNFCSSISDLHSVCG-------FKSRRQNQVSAS---AVDAAPESLESSPIN------ 99
           S+T+ CSS    H           F ++    +S        AAPE+L +  +       
Sbjct: 8   SSTSLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTGIDTSD 67

Query: 100 ---QKLGVNVKPMEKPRLVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEEL 159
              Q+    VKP EK R+VLKFVWMEKNIG+ LDQ +PGHGTIPLS Y+FWPRKDAWEEL
Sbjct: 68  NTPQQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEEL 127

Query: 160 KVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 177
           K  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 128 KSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of Sed0001957 vs. TAIR 10
Match: AT1G68590.2 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-39
Identity = 85/153 (55.56%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 40  STTNFCSSISDLHSVCG-------FKSRRQNQVSAS---AVDAAPESLESSPI------N 99
           S+T+ CSS    H           F ++    +S        AAPE+L +  +      +
Sbjct: 8   SSTSLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTGIDTSD 67

Query: 100 QKLGVNVKPMEKPRLVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVL 159
                 +KP EK R+VLKFVWMEKNIG+ LDQ +PGHGTIPLS Y+FWPRKDAWEELK  
Sbjct: 68  NTPQQTIKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKST 127

Query: 160 LESKPWISQKQMIILLNQATDIINLWQQGGGNL 177
           LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 128 LEAKPWISQKKMIILLNQATDIINLWQQSGGNL 160

[Close]

BLAST of Sed0001957 vs. TAIR 10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-39
Identity = 76/105 (72.38%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 74  PESLESSPI-NQKLGVNVKPMEKPRLVLKFVWMEKNIGIALDQMIPGHGTIPLSSYYFWP 133
           PES ES P+  +K+ V VKP+EKP++VLKFVWM+K+IG+ALD MIPG GTIPLS YYFWP
Sbjct: 80  PES-ESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWP 139

Query: 134 RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 178
           RKDAWEELK LLESKPWIS+   + LLNQATDIINLWQ  GG+L+
Sbjct: 140 RKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183

The following BLAST results are available for this feature:

BLAST of Sed0001957 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875586.1	2.3e-66	72.02	30S ribosomal protein 3, chloroplastic-like [Benincasa hispida]	[more]
XP_023522262.1	1.8e-63	69.50	30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_008461583.1	3.1e-63	71.50	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo]	[more]
XP_022997676.1	1.5e-62	69.00	30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima]	[more]
XP_004145640.2	1.5e-62	70.98	30S ribosomal protein 3, chloroplastic [Cucumis sativus]	[more]

BLAST of Sed0001957 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82412	2.7e-46	54.79	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
Q9SX22	1.6e-38	55.77	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
Q9LFV0	2.1e-38	72.38	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
O48609	6.8e-37	74.74	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
P51351	2.8e-22	58.44	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of Sed0001957 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CF24	1.5e-63	71.50	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A6J1K853	7.5e-63	69.00	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0L9T8	7.5e-63	70.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1	[more]
A0A5D3CJH0	8.3e-62	71.58	30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1GBD3	1.4e-61	67.50	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Sed0001957 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68590.1	1.1e-39	55.77	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.2	1.5e-39	55.56	Ribosomal protein PSRP-3/Ycf65	[more]
AT5G15760.1	1.5e-39	72.38	Ribosomal protein PSRP-3/Ycf65	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	3.30.390.140		coord: 97..175 e-value: 1.3E-33 score: 116.8
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 125..171 e-value: 1.1E-26 score: 92.7
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 1..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001957.1	Sed0001957.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0003735	structural constituent of ribosome