Sed0001954 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTTCTTCTCTTGTTGCTGTTTTCGCCATTGCATTTCTCTTCTTCTTATCCACTTCTGTTCACTCCAGAGGTAACCTTAATCTCTCTCTCATGGAATTTTTAGGTTTTTCTGTTGGTTTTTCAATACATTAAGGTTTGTTTCAGATCTCAAAGCATAATCATTCATGAAGTGTAAACATTATTAGAAATGTAGATAATCTCACTTTGGAAAGACTGAAATGATCTCTCAACTTACGGAAAAAGATTAAATGAGACTTCAGTAACTAAGATTTCATTTTGTTCTTTTTTAAGTTTTATAATATAATTTTATCAATTTGATTTCGTAGGGAACAAATTTGTCCTTTTGAGATAGTTTTAATAGCAAGACCTGAAGGTCAAAGAAAGAACGGCTAGTCATCTATCTATAAAATAAATTTTTTACAAATTTTTTGACTTTCAAAGTAATTTGTCTCATGAGAATAGTTGACATGCCCATAAATTGACCTAAATACTGACGGATATTAAAATAAACAGTTTTATTGGCATGCCATTATAATTCTGTAGAAAATTTGTTTTAATTATTAGCATAGACTTATACCATTTGGGTTTTAGCTCTGTTAAAACAGAAATACTTGAATACTTAGCACTAACTACCTATTAAAAACTTAACCAACTATTTGTGAAGATATAAAAAATGCATTAAAAAATATATAAAAAAATTGATGATTTAAAAATGTATAAAAAAAATGATGATTTAACTAATGAGAGAGATGATAATTAAAAATGTGGCTTATAATCCTCACAAATAAATGATAAGTATTTTTTTTGAAGATACAACATTTAGAATAGGAGATTCAAACCTATGATCTCAAGGTTATTCGTTGTACACCGATGCAACTTGAGCTATTGCTTATGTTGGCCTAAATACTCCACTATTAATCTTTGATAAAAACATGCTCTATTTTTTTCTTTTTTTTAAGCTAGATTAGTGTCCAAATTTAGGGTGGGTGGTTATTTTTGAAAGTTCAAGACTCAAATGCAATTATTCAACAAAATCAAATAAAACCTGCTTAATTTGCAATAAATGCTCTGAAAAAAAAGAAAAATATCAATGTCGTGACTGCGGATGAAAAAATCAACCTTCTAGAAGGGCAAAACAGCTACAGACAAGCACAGAATCTCCAGCCGCTCATAAATAACGAAAATGCCGACTGCATCGCCAACAAAATCGCCAACGACGAAGCCGGGACCCAGATCTGCGCCGATATCGCCGCCAAACCAACCGCCGTTGCAAGCAGCCCGTCGCAGATAACGAAGTTCCCGAATTTCGCCGAGAAATGCAAGGTCGAAATCAATACCACCGCCGACGCTGTCGTGATGCCGGCGTGCGTGCCGGAGATGGTCCAGACTCTGTTGCTTTCAAACTATACGAACTCGCAGTAAGCTAAATATTTGAACGATTCGAGGTTCGTCGGCGCCGGACTCGGCAAGGAGGACGGGTGGGTGGTGGTGATTCTGACCACCGCCGCACCCGCCGGGGAATTTGCCGGCTCCAGAGCTGGGTCGGTGGCGGCTTCGATTGGGGGATCAGTGGCTAGGGTTTTTTATTTTGGGGATTTTGTGAGATTGTGA ATGGCTTCTTCTTCTCTTGTTGCTGTTTTCGCCATTGCATTTCTCTTCTTCTTATCCACTTCTGTTCACTCCAGAGAAGGGCAAAACAGCTACAGACAAGCACAGAATCTCCAGCCGCTCATAAATAACGAAAATGCCGACTGCATCGCCAACAAAATCGCCAACGACGAAGCCGGGACCCAGATCTGCGCCGATATCGCCGCCAAACCAACCGCCGTTGCAAGCAGCCCGTCGCAGATAACGAAGTTCCCGAATTTCGCCGAGAAATGCAAGGTCGAAATCAATACCACCGCCGACGCTGTCGTGATGCCGGCGTGCGTGCCGGAGATGGTCCAGACTCTGTTCGTCGGCGCCGGACTCGGCAAGGAGGACGGGTGGGTGGTGGTGATTCTGACCACCGCCGCACCCGCCGGGGAATTTGCCGGCTCCAGAGCTGGGTCGGTGGCGGCTTCGATTGGGGGATCAGTGGCTAGGGTTTTTTATTTTGGGGATTTTGTGAGATTGTGA ATGGCTTCTTCTTCTCTTGTTGCTGTTTTCGCCATTGCATTTCTCTTCTTCTTATCCACTTCTGTTCACTCCAGAGAAGGGCAAAACAGCTACAGACAAGCACAGAATCTCCAGCCGCTCATAAATAACGAAAATGCCGACTGCATCGCCAACAAAATCGCCAACGACGAAGCCGGGACCCAGATCTGCGCCGATATCGCCGCCAAACCAACCGCCGTTGCAAGCAGCCCGTCGCAGATAACGAAGTTCCCGAATTTCGCCGAGAAATGCAAGGTCGAAATCAATACCACCGCCGACGCTGTCGTGATGCCGGCGTGCGTGCCGGAGATGGTCCAGACTCTGTTCGTCGGCGCCGGACTCGGCAAGGAGGACGGGTGGGTGGTGGTGATTCTGACCACCGCCGCACCCGCCGGGGAATTTGCCGGCTCCAGAGCTGGGTCGGTGGCGGCTTCGATTGGGGGATCAGTGGCTAGGGTTTTTTATTTTGGGGATTTTGTGAGATTGTGA MASSSLVAVFAIAFLFFLSTSVHSREGQNSYRQAQNLQPLINNENADCIANKIANDEAGTQICADIAAKPTAVASSPSQITKFPNFAEKCKVEINTTADAVVMPACVPEMVQTLFVGAGLGKEDGWVVVILTTAAPAGEFAGSRAGSVAASIGGSVARVFYFGDFVRL Homology
BLAST of Sed0001954 vs. NCBI nr
Match: XP_008454814.1 (PREDICTED: uncharacterized GPI-anchored protein At3g06035 [Cucumis melo] >ABR67421.1 GPI-anchored protein-like protein II [Cucumis melo subsp. melo] >KAA0047959.1 putative GPI-anchored protein [Cucumis melo var. makuwa] >TYK18316.1 putative GPI-anchored protein [Cucumis melo var. makuwa]) HSP 1 Score: 161.8 bits (408), Expect = 5.2e-36 Identity = 102/189 (53.97%), Postives = 115/189 (60.85%), Query Frame = 0
BLAST of Sed0001954 vs. NCBI nr
Match: XP_022999135.1 (uncharacterized GPI-anchored protein At3g06035-like [Cucurbita maxima]) HSP 1 Score: 160.6 bits (405), Expect = 1.2e-35 Identity = 101/195 (51.79%), Postives = 119/195 (61.03%), Query Frame = 0
BLAST of Sed0001954 vs. NCBI nr
Match: KAG6599253.1 (putative GPI-anchored protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 156.4 bits (394), Expect = 2.2e-34 Identity = 99/191 (51.83%), Postives = 115/191 (60.21%), Query Frame = 0
BLAST of Sed0001954 vs. NCBI nr
Match: XP_022946761.1 (uncharacterized GPI-anchored protein At3g06035 [Cucurbita moschata] >XP_023545378.1 uncharacterized GPI-anchored protein At3g06035 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 156.0 bits (393), Expect = 2.9e-34 Identity = 99/191 (51.83%), Postives = 115/191 (60.21%), Query Frame = 0
BLAST of Sed0001954 vs. NCBI nr
Match: XP_022150744.1 (uncharacterized GPI-anchored protein At3g06035 [Momordica charantia]) HSP 1 Score: 155.6 bits (392), Expect = 3.8e-34 Identity = 98/181 (54.14%), Postives = 116/181 (64.09%), Query Frame = 0
BLAST of Sed0001954 vs. ExPASy Swiss-Prot
Match: Q84MC0 (Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana OX=3702 GN=At3g06035 PE=2 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 6.3e-16 Identity = 49/133 (36.84%), Postives = 68/133 (51.13%), Query Frame = 0
BLAST of Sed0001954 vs. ExPASy Swiss-Prot
Match: P59833 (Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana OX=3702 GN=At5g19250 PE=2 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 3.1e-15 Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = 0
BLAST of Sed0001954 vs. ExPASy Swiss-Prot
Match: Q84VZ5 (Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana OX=3702 GN=At5g19240 PE=2 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 1.0e-10 Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 0
BLAST of Sed0001954 vs. ExPASy Swiss-Prot
Match: Q8GUL8 (Uncharacterized GPI-anchored protein At5g19230 OS=Arabidopsis thaliana OX=3702 GN=At5g19230 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07 Identity = 44/154 (28.57%), Postives = 67/154 (43.51%), Query Frame = 0
BLAST of Sed0001954 vs. ExPASy TrEMBL
Match: A0A5A7U3D6 (Putative GPI-anchored protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00270 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 2.5e-36 Identity = 102/189 (53.97%), Postives = 115/189 (60.85%), Query Frame = 0
BLAST of Sed0001954 vs. ExPASy TrEMBL
Match: A6YTC7 (GPI-anchored protein-like protein II OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 2.5e-36 Identity = 102/189 (53.97%), Postives = 115/189 (60.85%), Query Frame = 0
BLAST of Sed0001954 vs. ExPASy TrEMBL
Match: A0A1S3C074 (uncharacterized GPI-anchored protein At3g06035 OS=Cucumis melo OX=3656 GN=LOC103495124 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 2.5e-36 Identity = 102/189 (53.97%), Postives = 115/189 (60.85%), Query Frame = 0
BLAST of Sed0001954 vs. ExPASy TrEMBL
Match: A0A6J1KEG4 (uncharacterized GPI-anchored protein At3g06035-like OS=Cucurbita maxima OX=3661 GN=LOC111493609 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 5.7e-36 Identity = 101/195 (51.79%), Postives = 119/195 (61.03%), Query Frame = 0
BLAST of Sed0001954 vs. ExPASy TrEMBL
Match: A0A6J1G4I7 (uncharacterized GPI-anchored protein At3g06035 OS=Cucurbita moschata OX=3662 GN=LOC111450734 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34 Identity = 99/191 (51.83%), Postives = 115/191 (60.21%), Query Frame = 0
BLAST of Sed0001954 vs. TAIR 10
Match: AT1G54860.1 (Glycoprotein membrane precursor GPI-anchored ) HSP 1 Score: 93.6 bits (231), Expect = 1.6e-19 Identity = 52/146 (35.62%), Postives = 77/146 (52.74%), Query Frame = 0
BLAST of Sed0001954 vs. TAIR 10
Match: AT3G06035.1 (Glycoprotein membrane precursor GPI-anchored ) HSP 1 Score: 85.5 bits (210), Expect = 4.4e-17 Identity = 49/133 (36.84%), Postives = 68/133 (51.13%), Query Frame = 0
BLAST of Sed0001954 vs. TAIR 10
Match: AT5G19250.1 (Glycoprotein membrane precursor GPI-anchored ) HSP 1 Score: 83.2 bits (204), Expect = 2.2e-16 Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = 0
BLAST of Sed0001954 vs. TAIR 10
Match: AT5G19240.1 (Glycoprotein membrane precursor GPI-anchored ) HSP 1 Score: 68.2 bits (165), Expect = 7.3e-12 Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 0
BLAST of Sed0001954 vs. TAIR 10
Match: AT5G19230.1 (Glycoprotein membrane precursor GPI-anchored ) HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08 Identity = 44/154 (28.57%), Postives = 67/154 (43.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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