Sed0001934 (gene) Chayote v1

Overview


Name	Sed0001934
Type	gene
Organism	Sechium edule (Chayote v1)
Description	histone H1-like
Location	LG11: 1989113 .. 1990499 (-)
RNA-Seq Expression	Sed0001934
Synteny	Sed0001934

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTAGATTTAACGTTTCGAGTTCGAGCTCCATTGATTCCGATCATGTCTTCCGCCGCCGTTAAACCGGTGGAAAAAGCTTCGAAGCCTAAGAAACCATCTGCTGCGAAGAGGACCAAATCTTCGCCGACTCATCCTCCATTCTTTCAGGTGTGTGAATGATTCTCTATTGTTTCACTGTGATTTATCGTTCTTAACTTATCGGATTTTGTAATTGTCCTGTGATTGAATGCTCTGATTTGATCGGATTATGTATCTGTTCTGTGATATGATCTTCGAATCTGATCGGATTATGTGTATGTCCTGTGATGTAATGTTATGATTTGATCGGATTTTGTATTTTTTCAGTGATTTAATGTTTTAATTTAATCGGATTCTGTATTTGTTCTGTGATTTCATGTTCTAATCTCATCGGATTTTATATTTCTCTGTGTTTTAATGTTCTAATCTGATCGGATTTTGTATTTGATCTGTAGATGATTAGCGAAGCGATCATATCGCTGAAGGAAAGAACCGGATCGAGTCAATACGCGATTACAAAGTTCAACGAAGAGAGGCACAAGCAATTGCCGTCCAATTTCAGGAAGCTATTGCTCGTTCAATTGAAGAAACTAGTCGCCGCCGATAAAATCGTAAAGGTAAAAAACTCCTACAAGCTTCCATCGGCGCGATCTGTTAAGGAAAAATCCGCCGCCGCCGCAGCAGCAGCAGCGCCAGTCGCGAAATCGAAGGCGAAAACAGCCGCAAAACCTAAACCGAAGCCGAAGACGGTTGCGAAATCCAAGGCCGCCGCTGCCGCGGTGAAGCCTAAGGCTGCAGTGAAGGTCAAGAAAGTTGCTCCGAAGCCAAAACCTGTAGCGAAACCTGCTAAGGCTGCGAGAACTTCGTCGCGAACTTCGCCGGGAAAGAAACCGCTACCGGCGGCGAAGACGAAGAAGAAGATTGTTAAATCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAAACGGTTAGTGTGTTTTGATTGAATTCTAGGGTTTGTAGTTTCCTACTACTTGTTCGTAGCGATGTAAATTAGGGATAACGAGATTGAAATCGTTGCATTTATACTTGTTATTCAAATTCACTTTGATGAATTCTCTAGGGTTTATAAAAGTTATCGTTCTCTTCTTTGAGACTGTTCAGTGCTGAGATTCTGTGAGTATTTTTTTACATTTGGGTTTTAAAAGCTTTGATCGTTGCTTCAATGGCGGATTTCCCGTTTCTGAAAGCTTTGTTTTGGTCGCACGTGCGTATCTAATTCCGTAACGTCGTTTCAAAATCCGTTATAATCCACGTTGGATTTGATTTTTTTTTTTTTAAAAGAATAATTTGGATTTATATATACATTGTCACG

mRNA sequence

TCTCTCTCTAGATTTAACGTTTCGAGTTCGAGCTCCATTGATTCCGATCATGTCTTCCGCCGCCGTTAAACCGGTGGAAAAAGCTTCGAAGCCTAAGAAACCATCTGCTGCGAAGAGGACCAAATCTTCGCCGACTCATCCTCCATTCTTTCAGATGATTAGCGAAGCGATCATATCGCTGAAGGAAAGAACCGGATCGAGTCAATACGCGATTACAAAGTTCAACGAAGAGAGGCACAAGCAATTGCCGTCCAATTTCAGGAAGCTATTGCTCGTTCAATTGAAGAAACTAGTCGCCGCCGATAAAATCGTAAAGGTAAAAAACTCCTACAAGCTTCCATCGGCGCGATCTGTTAAGGAAAAATCCGCCGCCGCCGCAGCAGCAGCAGCGCCAGTCGCGAAATCGAAGGCGAAAACAGCCGCAAAACCTAAACCGAAGCCGAAGACGGTTGCGAAATCCAAGGCCGCCGCTGCCGCGGTGAAGCCTAAGGCTGCAGTGAAGGTCAAGAAAGTTGCTCCGAAGCCAAAACCTGTAGCGAAACCTGCTAAGGCTGCGAGAACTTCGTCGCGAACTTCGCCGGGAAAGAAACCGCTACCGGCGGCGAAGACGAAGAAGAAGATTGTTAAATCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAAACGGTTAGTGTGTTTTGATTGAATTCTAGGGTTTGTAGTTTCCTACTACTTGTTCGTAGCGATGTAAATTAGGGATAACGAGATTGAAATCGTTGCATTTATACTTGTTATTCAAATTCACTTTGATGAATTCTCTAGGGTTTATAAAAGTTATCGTTCTCTTCTTTGAGACTGTTCAGTGCTGAGATTCTGTGAGTATTTTTTTACATTTGGGTTTTAAAAGCTTTGATCGTTGCTTCAATGGCGGATTTCCCGTTTCTGAAAGCTTTGTTTTGGTCGCACGTGCGTATCTAATTCCGTAACGTCGTTTCAAAATCCGTTATAATCCACGTTGGATTTGATTTTTTTTTTTTTAAAAGAATAATTTGGATTTATATATACATTGTCACG

Coding sequence (CDS)

ATGTCTTCCGCCGCCGTTAAACCGGTGGAAAAAGCTTCGAAGCCTAAGAAACCATCTGCTGCGAAGAGGACCAAATCTTCGCCGACTCATCCTCCATTCTTTCAGATGATTAGCGAAGCGATCATATCGCTGAAGGAAAGAACCGGATCGAGTCAATACGCGATTACAAAGTTCAACGAAGAGAGGCACAAGCAATTGCCGTCCAATTTCAGGAAGCTATTGCTCGTTCAATTGAAGAAACTAGTCGCCGCCGATAAAATCGTAAAGGTAAAAAACTCCTACAAGCTTCCATCGGCGCGATCTGTTAAGGAAAAATCCGCCGCCGCCGCAGCAGCAGCAGCGCCAGTCGCGAAATCGAAGGCGAAAACAGCCGCAAAACCTAAACCGAAGCCGAAGACGGTTGCGAAATCCAAGGCCGCCGCTGCCGCGGTGAAGCCTAAGGCTGCAGTGAAGGTCAAGAAAGTTGCTCCGAAGCCAAAACCTGTAGCGAAACCTGCTAAGGCTGCGAGAACTTCGTCGCGAACTTCGCCGGGAAAGAAACCGCTACCGGCGGCGAAGACGAAGAAGAAGATTGTTAAATCGCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Protein sequence

MSSAAVKPVEKASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNFRKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKSAAAAAAAAPVAKSKAKTAAKPKPKPKTVAKSKAAAAAVKPKAAVKVKKVAPKPKPVAKPAKAARTSSRTSPGKKPLPAAKTKKKIVKSPARKVQARKVKK

Homology

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BLAST of Sed0001934 vs. NCBI nr
Match: XP_004139246.1 (histone H1 [Cucumis sativus] >KAE8651556.1 hypothetical protein Csa_019256 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 3.9e-57
Identity = 163/238 (68.49%), Postives = 174/238 (73.11%), Query Frame = 0


Query: 2   SSAAVKPVEKASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEE 61
           S A      KASK KKPS AK+ +SSPTHPPF QMISEAI+SLKERTGSSQYAITKF EE
Sbjct: 26  SKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSSQYAITKFTEE 85

Query: 62  RHKQLPSNFRKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKSAAAAAA--------- 121
           +HKQLPSNFRKLLLV LKKLVAA+K+VKVKNSYKLPSARS++ K+AAAAAA         
Sbjct: 86  KHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKLPSARSIQAKAAAAAAAPVTAKKPVS 145

Query: 122 ---------AAPVAKSKAKTAAKP------KPKPKTVAKSKAAA---AAVKPKAAVKVKK 181
                     A VAKSKAKTAAKP      KPKPKTVAKSK  A    A K KAA KVKK
Sbjct: 146 SKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPKTVAKSKTVAKPKTAAKTKAAEKVKK 205

Query: 182 VAPKPKPVAKPAKAARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
           VAPKPKP AK AK A+T SRTSPGK+  PA K KK      K VKSPARKVQARKVKK
Sbjct: 206 VAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKKVAAKKPKTVKSPARKVQARKVKK 263

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BLAST of Sed0001934 vs. NCBI nr
Match: XP_023521173.1 (histone H1-like [Cucurbita pepo subsp. pepo] >XP_023521452.1 histone H1-like [Cucurbita pepo subsp. pepo] >XP_023547297.1 histone H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 3.3e-56
Identity = 160/224 (71.43%), Postives = 169/224 (75.45%), Query Frame = 0


Query: 11  KASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNF 70
           KASK KKPS AKRT+SSPTHPPFF+MISEAI+SLKERTGSSQYAITKF+EE+HKQLPSNF
Sbjct: 37  KASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNF 96

Query: 71  RKLLLVQLKKLVAADKIVKVKNSYKLPSARS-------VKEK------SAAAAAAAAPVA 130
           RKLLLV LKKLVAADK+VKVKNSYKLPSARS       V +K       AA +   A VA
Sbjct: 97  RKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVA 156

Query: 131 KSKAKTAAKPKP----KPKTVAKSKA-----AAAAVKPKAAVKVKKVAPKPKPVAKPAKA 190
           K KAKTA KPKP    KPK  AKSK      A A  K KAA KVKKVAPKPKP AKPAK 
Sbjct: 157 KPKAKTAVKPKPKVVAKPKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKV 216

Query: 191 ARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
           A+T SRTSPGKK  PAAK KK      K VKSPARKVQARKVKK
Sbjct: 217 AKTLSRTSPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Sed0001934 vs. NCBI nr
Match: KAG6599320.1 (Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.2 bits (583), Expect = 3.3e-56
Identity = 160/224 (71.43%), Postives = 169/224 (75.45%), Query Frame = 0


Query: 11  KASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNF 70
           KASK KKPS AKRT+SSPTHPPFF+MISEAI+SLKERTGSSQYAITKF+EE+HKQLPSNF
Sbjct: 37  KASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNF 96

Query: 71  RKLLLVQLKKLVAADKIVKVKNSYKLPSARS-------VKEK------SAAAAAAAAPVA 130
           RKLLLV LKKLVAADK+VKVKNSYKLPSARS       V +K       AA +   A VA
Sbjct: 97  RKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVA 156

Query: 131 KSKAKTAAKPKP----KPKTVAKSKA-----AAAAVKPKAAVKVKKVAPKPKPVAKPAKA 190
           K KAKTA KPKP    KPK  AKSK      A A  K KAA KVKKVAPKPKP AKPAK 
Sbjct: 157 KPKAKTAVKPKPKAVAKPKAAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKV 216

Query: 191 ARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
           A+T SRTSPGKK  PAAK KK      K VKSPARKVQARKVKK
Sbjct: 217 AKTLSRTSPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Sed0001934 vs. NCBI nr
Match: KAG7021165.1 (Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.0 bits (580), Expect = 7.3e-56
Identity = 157/228 (68.86%), Postives = 172/228 (75.44%), Query Frame = 0


Query: 11  KASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNF 70
           K SK KK S AK+TKSSPTHPPFFQMISEAI+SLKERTGSSQYAITKF+EE+HK LPSNF
Sbjct: 33  KDSKAKKSSGAKKTKSSPTHPPFFQMISEAIVSLKERTGSSQYAITKFSEEKHKVLPSNF 92

Query: 71  RKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKS-----------------AAAAAAA 130
           RKLLLV LKKLVAADK+VKVKNSYKLPSARSV++KS                 AA+   A
Sbjct: 93  RKLLLVHLKKLVAADKLVKVKNSYKLPSARSVQQKSSSAPVVAKKTTISKLKAAASVKKA 152

Query: 131 APVAKSKAKTAAKPKP----KPKTVAKSKA-----AAAAVKPKAAVKVKKVAPKPKPVAK 190
           A VAK KAKTA KPKP    KPKT+AKSK      AAA  KPKAA KVKKVAPKPKP +K
Sbjct: 153 AAVAKPKAKTAVKPKPNVVVKPKTIAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSK 212

Query: 191 PAKAARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
           P+K A+T SRTSPGK+  PAAK+KK      K VKSP RK+ ARKVKK
Sbjct: 213 PSKVAKTFSRTSPGKRVAPAAKSKKVAAKKSKTVKSPTRKLLARKVKK 260

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BLAST of Sed0001934 vs. NCBI nr
Match: XP_022946127.1 (histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.0 bits (580), Expect = 7.3e-56
Identity = 159/224 (70.98%), Postives = 170/224 (75.89%), Query Frame = 0


Query: 11  KASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNF 70
           KASK KKPS AKRT+SSPTHPPFF+MISEAI+SLKERTGSSQYAITKF+EE+HK+LPSNF
Sbjct: 37  KASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNF 96

Query: 71  RKLLLVQLKKLVAADKIVKVKNSYKLPSARS-------VKEK------SAAAAAAAAPVA 130
           RKLLLV LKKLVAADK+VKVKNSYKLPSARS       V +K       AA +   A VA
Sbjct: 97  RKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVA 156

Query: 131 KSKAKTAAKPKP----KPKTVAKSKA-----AAAAVKPKAAVKVKKVAPKPKPVAKPAKA 190
           K KAKTA KPKP    KPK+ AKSK      A A  K KAA KVKKVAPKPKP AKPAK 
Sbjct: 157 KPKAKTAVKPKPKAVAKPKSAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKV 216

Query: 191 ARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
           A+T SRTSPGKK  PAAK KK      K VKSPARKVQARKVKK
Sbjct: 217 AKTLSRTSPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 260

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BLAST of Sed0001934 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-32
Identity = 117/252 (46.43%), Postives = 147/252 (58.33%), Query Frame = 0


Query: 10  EKASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSN 69
           +K +K KKP+A ++  ++PTHPP+F+MI +AI++LKERTGSSQ+AITKF EE+ K LPSN
Sbjct: 36  KKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSN 95

Query: 70  FRKLLLVQLKKLVAADKIVKVKNSYKLPS-------ARSVKEKSAAA------------- 129
           F+KLLL QLKK VA++K+VKVKNSYKLPS       A   K+K AAA             
Sbjct: 96  FKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVK 155

Query: 130 -----------------AAAAAPVAKSKAKTAAKPKPKPKTVAKSK-AAAAAVKPKAAVK 189
                            AA A P AK+K    AKP  K K VAK+K  AAAA KPKAAVK
Sbjct: 156 PKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVK 215

Query: 190 VKKVAPKPKPVAKP--------AKAARTSSRTSPGKKPLPAA---------KTKKKIVKS 207
            K    K K   KP        AK A+T++RT+P +K  P A         K   K VKS
Sbjct: 216 PKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSRKAAPKATPAKKEPVKKAPAKNVKS 275

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BLAST of Sed0001934 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.5e-31
Identity = 122/253 (48.22%), Postives = 146/253 (57.71%), Query Frame = 0


Query: 1   MSSAAVKPVEKASKPKKPSAAKRTK-----SSPT-------HPPFFQMISEAIISLKERT 60
           + S   KP  K  K KK + AK TK     ++PT       HP + +MI +AI++LKERT
Sbjct: 21  VKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERT 80

Query: 61  GSSQYAITKFNEERHKQLPSNFRKLLLVQLKKLVAADKIVKVKNSYKLPSARS------- 120
           GSSQYAI KF EE+HK LP  FRKLLLV LK+LVA++K+VKVK S+K+PSARS       
Sbjct: 81  GSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPA 140

Query: 121 --VKEKSAAAA----AAAAPVAKSKAKTAAKPKPKP--------KTVAKSKAAAAAVKPK 180
             VK+K+   A      AA VA +KAK AAK   KP        K  AK KA   A KPK
Sbjct: 141 APVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPK 200

Query: 181 -----AAVKVKKVAPKPKPVAKPAKAARTSSRTSPGKKPLPAAK---------TKKKIVK 207
                A  K K VA KPK   +PAKA+RTS+RTSPGKK    AK          K   VK
Sbjct: 201 SKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVK 260

[Close]

BLAST of Sed0001934 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.2e-30
Identity = 118/206 (57.28%), Postives = 135/206 (65.53%), Query Frame = 0


Query: 3   SAAVK-PVEKASKPKKPSAAKRTKSSPT--HPPFFQMISEAIISLKERTGSSQYAITKFN 62
           +AAVK P EK    KK  AAK+ KS  T  HP FF+MIS+AI +LKERTGSSQYAI KF 
Sbjct: 25  AAAVKVPKEK----KKVIAAKKPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFV 84

Query: 63  EERHKQLPSNFRKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKS-AAAAAAAAPVAK 122
           E++HKQLPSNFRKLLL  LKKLVA+ K+VKVKNS+KLPSAR+    + A       P   
Sbjct: 85  EDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSARAAPAPALAKKPTIPKPKVA 144

Query: 123 SKAKTA---AKPKPKPKTVAKSKAAAAAVKPK--AAVKVKKVAPKPKPV-AKPAKAARTS 182
           +K KTA   AKPK K K  AK+KA    V  K  AA    K A KPK V AKPAK A+T+
Sbjct: 145 AKPKTAKIGAKPKAKAKVAAKTKATTKTVAKKIPAAKPKAKTAGKPKTVAAKPAKVAKTA 204

Query: 183 SRTSPGKKPLPAAKTKKKIVKSPARK 199
           +  SPGKK     K K K VKSPA K
Sbjct: 205 AVASPGKKKAVPVK-KVKTVKSPAGK 225

[Close]

BLAST of Sed0001934 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 6.1e-29
Identity = 113/215 (52.56%), Postives = 133/215 (61.86%), Query Frame = 0


Query: 12  ASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHK-QLPSNF 71
           A+K KK +A K+ ++SPTH P+ +M+SEAI SLKERTGSS YAI KF E++HK +LP NF
Sbjct: 33  AAKAKKATAPKK-RASPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNF 92

Query: 72  RKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKSAAA-----------AAAAAPVAK- 131
           RKLL VQLKKLVA  K+ KVKNSYKL SA     K  AA            AAA P AK 
Sbjct: 93  RKLLNVQLKKLVAGGKLTKVKNSYKLSSATKPNPKPKAAPKKPKTGAKKPKAAAKPKAKT 152

Query: 132 -SKAKTAAKPKP--KPKTVAKSKA-AAAAVKPKAAVKVKKVAPKPKPVAKP---AKAART 191
            +KAK A KPKP  KPK V K K  A    KP A  K K    KPKP+AK    AKAA+T
Sbjct: 153 PAKAKPATKPKPAAKPKAVVKPKTPAKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKAAKT 212

Query: 192 SSRTSPGKKPLPAAKTKKKIVKSPARKVQARKVKK 207
           S++ +PGKK         K   +P RK  +RK KK
Sbjct: 213 SAKDTPGKKAPAKKAAPSKKAATPVRKAPSRKAKK 246

[Close]

BLAST of Sed0001934 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.4e-27
Identity = 104/224 (46.43%), Postives = 131/224 (58.48%), Query Frame = 0


Query: 9   VEKASKPK--KPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQL 68
           VEK  K K  KP  A + ++  +HP + +MI +AI+SLKE+ GSSQYAI KF EE+ KQL
Sbjct: 39  VEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQL 98

Query: 69  PSNFRKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKSAAAAAAAAPVAKSKAKTAAK 128
           P+NF+KLLL  LKK VA+ K++KVK S+KL +A      +   A  AA     KAK AAK
Sbjct: 99  PANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKPAVAKPKAKTAAKAKSVKAKPAAK 158

Query: 129 PKP----KPKTVAKSKAAAAAVKPKAAVKVKKVAPKPKPVA-------------KPAKAA 188
           PK     KPK  +K+KA AA  K KAA K K VA K KP A             KPAK A
Sbjct: 159 PKAKAVVKPKVASKAKAVAAKPK-KAAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVA 218

Query: 189 RTSSRTSPGK----------KPLPAAKTKKKIVKSPARKVQARK 204
           +TS +T+PGK          K +P    K K VKSP +KV  ++
Sbjct: 219 KTSVKTTPGKKVAAVKKVAAKKVPVKSVKAKSVKSPVKKVSVKR 261

[Close]

BLAST of Sed0001934 vs. ExPASy TrEMBL
Match: A0A6J1G2W2 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 3.5e-56
Identity = 159/224 (70.98%), Postives = 170/224 (75.89%), Query Frame = 0


Query: 11  KASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNF 70
           KASK KKPS AKRT+SSPTHPPFF+MISEAI+SLKERTGSSQYAITKF+EE+HK+LPSNF
Sbjct: 37  KASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNF 96

Query: 71  RKLLLVQLKKLVAADKIVKVKNSYKLPSARS-------VKEK------SAAAAAAAAPVA 130
           RKLLLV LKKLVAADK+VKVKNSYKLPSARS       V +K       AA +   A VA
Sbjct: 97  RKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVA 156

Query: 131 KSKAKTAAKPKP----KPKTVAKSKA-----AAAAVKPKAAVKVKKVAPKPKPVAKPAKA 190
           K KAKTA KPKP    KPK+ AKSK      A A  K KAA KVKKVAPKPKP AKPAK 
Sbjct: 157 KPKAKTAVKPKPKAVAKPKSAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKV 216

Query: 191 ARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
           A+T SRTSPGKK  PAAK KK      K VKSPARKVQARKVKK
Sbjct: 217 AKTLSRTSPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Sed0001934 vs. ExPASy TrEMBL
Match: A0A6J1KEC3 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 6.0e-56
Identity = 159/224 (70.98%), Postives = 168/224 (75.00%), Query Frame = 0


Query: 11  KASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNF 70
           KASK KKPS AKRT+SSPTHPPFF+MISEAI+SLKERTGSSQYAITKF+EE+HKQLPSNF
Sbjct: 37  KASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNF 96

Query: 71  RKLLLVQLKKLVAADKIVKVKNSYKLPSARS-------VKEK------SAAAAAAAAPVA 130
           RKLLLV LKKLVAADK+VKVKNSYKLPSARS       V +K       AA +   A VA
Sbjct: 97  RKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVA 156

Query: 131 KSKAKTAAKPKP----KPKTVAKSKA-----AAAAVKPKAAVKVKKVAPKPKPVAKPAKA 190
           K KAKTA KPKP    KPK  AKSK      A A  K KAA KVKKVAPKPKP AKPAK 
Sbjct: 157 KPKAKTAVKPKPKVVAKPKAAAKSKVVGKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKV 216

Query: 191 ARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
           A+T SR SPGKK  PAAK KK      K VKSPARKVQARKVKK
Sbjct: 217 AKTLSRASPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Sed0001934 vs. ExPASy TrEMBL
Match: A0A6J1CNP7 (histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.0e-55
Identity = 157/228 (68.86%), Postives = 171/228 (75.00%), Query Frame = 0


Query: 11  KASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNF 70
           KASK KKPS AKR KSSPTHPPFFQMISEAI+SLKERTGSSQYAITKF+EE+HKQLPSNF
Sbjct: 37  KASKAKKPSGAKRPKSSPTHPPFFQMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNF 96

Query: 71  RKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKSAAAAAAAAP--------------- 130
           RKLLLV LKKLVAADK+VKVKNSYKLPSARS++ K+AA  AA  P               
Sbjct: 97  RKLLLVHLKKLVAADKLVKVKNSYKLPSARSIQAKAAAPVAAKKPASSKLKAAASVKKKA 156

Query: 131 -VAKSKAKTAAKPKP----KPKTVAKS------KAAAAAVKPKAAVKVKKVAPKPKPVAK 190
            V K KAKTA KPKP    KPKT++KS      KAAAAA KPKAA KV K A K KP A+
Sbjct: 157 AVVKPKAKTAVKPKPKAVVKPKTISKSKVVAKPKAAAAAAKPKAAAKV-KAAAKAKPAAR 216

Query: 191 PAKAARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
           PAK A+T ++TSPGK+  PAAK KK      K VKSPARKVQARKVKK
Sbjct: 217 PAKVAKTLTQTSPGKRAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 263

[Close]

BLAST of Sed0001934 vs. ExPASy TrEMBL
Match: A0A5D3D4H1 (Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001600 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.9e-55
Identity = 157/228 (68.86%), Postives = 167/228 (73.25%), Query Frame = 0


Query: 11  KASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNF 70
           KASK KKPS AK+ +SSPTHPPF QMISEAI+SLKERTGSSQYAITKF EE+HKQLPSNF
Sbjct: 38  KASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNF 97

Query: 71  RKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKSAAAAAAAA---------------- 130
           RKLLLV LKKLVAADK+VKVKNSYKLPSARS++ K+AAAA  A                 
Sbjct: 98  RKLLLVHLKKLVAADKLVKVKNSYKLPSARSIQAKAAAAAPVATKKPVSSKLKAVASIKK 157

Query: 131 -PVAKSKAKTAAKP------KPKPKTVAKSKAAA---AAVKPKAAVKVKKVAPKPKPVAK 190
             VAK KAKTAAKP      KPKPKTV KSK  A    A K KAA KVKKVAPKPK  AK
Sbjct: 158 PAVAKPKAKTAAKPKPKAVAKPKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPKAGAK 217

Query: 191 PAKAARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
             K A+T SRTSPGK+  PAAK KK      K VKSPARKVQARKVKK
Sbjct: 218 ATKVAKTLSRTSPGKRAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of Sed0001934 vs. ExPASy TrEMBL
Match: A0A6J1FIZ7 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111444347 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.1e-54
Identity = 156/228 (68.42%), Postives = 169/228 (74.12%), Query Frame = 0


Query: 11  KASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQLPSNF 70
           K SK KK S AK+TKSSPTHPPFFQMISEAI+SLKERTGSSQYAITKF+EE+HK LPSNF
Sbjct: 33  KDSKAKKSSGAKKTKSSPTHPPFFQMISEAIVSLKERTGSSQYAITKFSEEKHKVLPSNF 92

Query: 71  RKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKS-----------------AAAAAAA 130
           RKLLLV LKKLVAADK+VKVKNSYKLPSARSV++KS                 AA+   A
Sbjct: 93  RKLLLVHLKKLVAADKLVKVKNSYKLPSARSVQQKSSSAPVVAKKTTISKLKAAASVKKA 152

Query: 131 APVAKSKAKTAAKPKP----KPKTVAKSKA-----AAAAVKPKAAVKVKKVAPKPKPVAK 190
           A VAK KAKTA KPKP    KPKTVAKSK      AAA  KPKAA KVKKVAPKPKP +K
Sbjct: 153 AAVAKPKAKTAVKPKPNAVVKPKTVAKSKVVQKPKAAAVAKPKAAEKVKKVAPKPKPKSK 212

Query: 191 PAKAARTSSRTSPGKKPLPAAKTKK------KIVKSPARKVQARKVKK 207
            +K A+T SRTSPGK+  PA K KK      K VKSP RK+ ARKVKK
Sbjct: 213 ASKVAKTLSRTSPGKRVAPATKPKKVAVKKSKTVKSPTRKLLARKVKK 260

[Close]

BLAST of Sed0001934 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 135.6 bits (340), Expect = 4.6e-32
Identity = 122/253 (48.22%), Postives = 146/253 (57.71%), Query Frame = 0


Query: 1   MSSAAVKPVEKASKPKKPSAAKRTK-----SSPT-------HPPFFQMISEAIISLKERT 60
           + S   KP  K  K KK + AK TK     ++PT       HP + +MI +AI++LKERT
Sbjct: 21  VKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERT 80

Query: 61  GSSQYAITKFNEERHKQLPSNFRKLLLVQLKKLVAADKIVKVKNSYKLPSARS------- 120
           GSSQYAI KF EE+HK LP  FRKLLLV LK+LVA++K+VKVK S+K+PSARS       
Sbjct: 81  GSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPA 140

Query: 121 --VKEKSAAAA----AAAAPVAKSKAKTAAKPKPKP--------KTVAKSKAAAAAVKPK 180
             VK+K+   A      AA VA +KAK AAK   KP        K  AK KA   A KPK
Sbjct: 141 APVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPK 200

Query: 181 -----AAVKVKKVAPKPKPVAKPAKAARTSSRTSPGKKPLPAAK---------TKKKIVK 207
                A  K K VA KPK   +PAKA+RTS+RTSPGKK    AK          K   VK
Sbjct: 201 SKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVK 260

[Close]

BLAST of Sed0001934 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 103/227 (45.37%), Postives = 123/227 (54.19%), Query Frame = 0


Query: 1   MSSAAVKPVEKASKPKKPSAAKRTK-----SSPT-------HPPFFQMISEAIISLKERT 60
           + S   KP  K  K KK + AK TK     ++PT       HP + +MI +AI++LKERT
Sbjct: 21  VKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERT 80

Query: 61  GSSQYAITKFNEERHKQLPSNFRKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKSAA 120
           GSSQYAI KF EE+HK LP  FRKLLLV LK+LVA++K+VKVK S+K+PSARS       
Sbjct: 81  GSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARS------- 140

Query: 121 AAAAAAPVAKSKAKTAAKPKPKPKTVAKSKAAAAAVKPKAAVKVKKVAPKPKPVAKPAKA 180
                          AA PKP           AA VK KA V           VAKP KA
Sbjct: 141 ---------------AATPKP-----------AAPVKKKATV-----------VAKP-KA 200

Query: 181 ARTSSRTSPGKKPLPAAK---------TKKKIVKSPARKVQARKVKK 207
           +RTS+RTSPGKK    AK          K   VKSPA++   RK KK
Sbjct: 201 SRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSPAKRASTRKAKK 202

[Close]

BLAST of Sed0001934 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-25
Identity = 108/238 (45.38%), Postives = 136/238 (57.14%), Query Frame = 0


Query: 7   KPVEKASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQL 66
           K V++  + K  +AA + ++  +HP + +MI +AI++LKERTGSSQYAI KF EE+ K+L
Sbjct: 39  KNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKEL 98

Query: 67  PSNFRKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKSAAAAAAAAPVAKSKAKTAAK 126
           P  FRKLLL+ LK+LVA+ K+VKVK S+KLPSA S K  S  AAA  +  AK K  T A 
Sbjct: 99  PPTFRKLLLLNLKRLVASGKLVKVKASFKLPSA-SAKASSPKAAAEKSAPAKKKPATVAV 158

Query: 127 PKPKPKTVAKSKA-AAAAVKPK---------------------AAVKVKKVAPKPKPVAK 186
            K K K  A SKA    AVKPK                     AA K K V  KPK  A+
Sbjct: 159 TKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPVPRATAAATKRKAVDAKPKAKAR 218

Query: 187 PAKAARTSSRTSPGKKPLPAAK----------------TKKKIVKSPARKVQARKVKK 207
           PAKAA+T+  TSP KK + A K                 K K VKSPA++  +R VKK
Sbjct: 219 PAKAAKTAKVTSPAKKAVAATKKVATVATKKKTPVKKVVKPKTVKSPAKRASSR-VKK 274

[Close]

BLAST of Sed0001934 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 66/176 (37.50%), Postives = 93/176 (52.84%), Query Frame = 0


Query: 6   VKPVEKASKPKKPSAAKRTKSSPTHPPFFQMISEAIISLKERTGSSQYAITKFNEERHKQ 65
           +K    A KP+KP        + THPP+FQMI EA++ LKE+ GSS YAI K  EE+HK 
Sbjct: 7   LKKTPAAKKPRKP-------KTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKS 66

Query: 66  -LPSNFRKLLLVQLKKLVAADKIVKVKNSYKLPSARSVKEKSAAAAAAAAPVAKSKAKTA 125
            LP +FRK L +QLK  VA  K+VK++ SYKL     +  +            +   K  
Sbjct: 67  LLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTTKMITR------------QQDKKNK 126

Query: 126 AKPKPKPKTVAKSKAAAAAVKPKAAVKVKKVAPKPKPVAKPAKAARTSSRTSPGKK 181
              K + K + K +  +++ +PK  V V K   K K   K A+  + S ++S GKK
Sbjct: 127 KNMKQEDKEITK-RTRSSSTRPKKTVSVNKQEKKRK--VKKARQPK-SIKSSVGKK 159

[Close]

BLAST of Sed0001934 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 47.0 bits (110), Expect = 2.1e-05
Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = 0


Query: 36  MISEAIISLKERTGSSQYAITKFNEERHKQ-LPSNFRKLLLVQLKKLVAADKIVKVKNSY 95
           MI EA++ LKE+ GSS YAI K  EE+HK  LP +FRK L +QLK  VA  K+VK++ SY
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 96  KLPSARSVKEKSAAAAAAAAPVAKSKAKTAAKPKPKPKTVAKSKAAAAAVKPKAAVKVKK 155
           KL     +  +            +   K     K + K + K +  +++ +PK  V V K
Sbjct: 61  KLSDTTKMITR------------QQDKKNKKNMKQEDKEITK-RTRSSSTRPKKTVSVNK 120

Query: 156 VAPKPKPVAKPAKAARTSSRTSPGKK 181
              K K   K A+  + S ++S GKK
Sbjct: 121 QEKKRK--VKKARQPK-SIKSSVGKK 130

The following BLAST results are available for this feature:

BLAST of Sed0001934 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139246.1	3.9e-57	68.49	histone H1 [Cucumis sativus] >KAE8651556.1 hypothetical protein Csa_019256 [Cucu...	[more]
XP_023521173.1	3.3e-56	71.43	histone H1-like [Cucurbita pepo subsp. pepo] >XP_023521452.1 histone H1-like [Cu...	[more]
KAG6599320.1	3.3e-56	71.43	Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7021165.1	7.3e-56	68.86	Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022946127.1	7.3e-56	70.98	histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyr...	[more]

BLAST of Sed0001934 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37218	3.4e-32	46.43	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
P26569	6.5e-31	48.22	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
Q9M5W4	7.2e-30	57.28	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P23444	6.1e-29	52.56	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P08283	7.4e-27	46.43	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of Sed0001934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2W2	3.5e-56	70.98	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1	[more]
A0A6J1KEC3	6.0e-56	70.98	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1	[more]
A0A6J1CNP7	1.0e-55	68.86	histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1	[more]
A0A5D3D4H1	3.9e-55	68.86	Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G0016...	[more]
A0A6J1FIZ7	1.1e-54	68.42	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111444347 PE=3 SV=1	[more]

BLAST of Sed0001934 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30620.1	4.6e-32	48.22	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	1.1e-25	45.37	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	1.4e-25	45.38	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	1.7e-10	37.50	histone H1-3	[more]
AT2G18050.2	2.1e-05	36.99	histone H1-3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 202..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..206
None	No IPR available	PANTHER	PTHR11467:SF122	HISTONE H1-LIKE	coord: 6..206
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 6..206
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 158..175 score: 30.25 coord: 16..37 score: 40.4 coord: 43..60 score: 38.89 coord: 180..199 score: 31.11 coord: 126..140 score: 39.26
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 27..93 e-value: 3.0E-29 score: 113.2
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 30..96 e-value: 8.5E-15 score: 54.9
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 29..98 score: 27.734108
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 27..101 e-value: 3.79569E-11 score: 55.3199
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 24..112 e-value: 3.2E-19 score: 70.8
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 26..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001934.1	Sed0001934.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding