Sed0001905 (gene) Chayote v1

Overview


Name	Sed0001905
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG08: 27148476 .. 27149019 (+)
RNA-Seq Expression	Sed0001905
Synteny	Sed0001905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATTCCCACATGTTCTCTCTCTCTAGAAAGTTGACTTTTTGATTTTGGGTGAAAGAAGGTGTTAAAAGGCTAAGGCATCCAATAAATGAGTTGATGAAAGCTGAATAATTTGGGATTGGGAAGCAAAGCAGAAAGGAAAATGGATCAGAATGTGAGCTCCATGATCATAGGATTGGTGGGAGCAGCCATCACTCTGTCAGCTTATTATCAGCCGTGGATTTCCCCAACGGACGGCATCACCATCGGCCTTCTTGTTCTTCTTTTCGGCCTTCTTGTTCGTGAAGGTTTCATCTCTATTTAATTACCTTCTTCTTTTCATTTTCATTTCCCCTAATTTCTTTCTTTATGCCTTTTTTTTTCTTTCCATCTCCAAAATAATTATGGCGGATCCAAGATTTCAGATCCATTTTCATTTCCTCCATCTTTGCAAATTTGAATAAGTTGTATAATGAAATGGTACTCATCAGTTGATGTGATGCTTCTTTTGGTTTCTCTGTTTAAATCATGTTGCTAAATAGTGATCAAGATCCTTTCAACTTTCA

mRNA sequence

TATATTCCCACATGTTCTCTCTCTCTAGAAAGTTGACTTTTTGATTTTGGGTGAAAGAAGGTGTTAAAAGGCTAAGGCATCCAATAAATGAGTTGATGAAAGCTGAATAATTTGGGATTGGGAAGCAAAGCAGAAAGGAAAATGGATCAGAATGTGAGCTCCATGATCATAGGATTGGTGGGAGCAGCCATCACTCTGTCAGCTTATTATCAGCCGTGGATTTCCCCAACGGACGGCATCACCATCGGCCTTCTTGTTCTTCTTTTCGGCCTTCTTGTTCGTGAAGGTTTCATCTCTATTTAATTACCTTCTTCTTTTCATTTTCATTTCCCCTAATTTCTTTCTTTATGCCTTTTTTTTTCTTTCCATCTCCAAAATAATTATGGCGGATCCAAGATTTCAGATCCATTTTCATTTCCTCCATCTTTGCAAATTTGAATAAGTTGTATAATGAAATGGTACTCATCAGTTGATGTGATGCTTCTTTTGGTTTCTCTGTTTAAATCATGTTGCTAAATAGTGATCAAGATCCTTTCAACTTTCA

Coding sequence (CDS)

ATGGATCAGAATGTGAGCTCCATGATCATAGGATTGGTGGGAGCAGCCATCACTCTGTCAGCTTATTATCAGCCGTGGATTTCCCCAACGGACGGCATCACCATCGGCCTTCTTGTTCTTCTTTTCGGCCTTCTTGTTCGTGAAGGTTTCATCTCTATTTAA

Protein sequence

MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI

Homology

[Close]

BLAST of Sed0001905 vs. NCBI nr
Match: XP_023531694.1 (uncharacterized protein LOC111793862 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M+QN+SS++IGLVGAA+TLSAY Q W+SPT+ IT GLLVL+FGLLV EGFISI
Sbjct: 31 MNQNLSSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 83

[Close]

BLAST of Sed0001905 vs. NCBI nr
Match: XP_022933884.1 (uncharacterized protein LOC111441164 [Cucurbita moschata])

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M+QN+SS++IGLVGAA+TLSAY Q W+SPT+ IT GLLVL+FGLLV EGFISI
Sbjct: 1  MNQNLSSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 53

[Close]

BLAST of Sed0001905 vs. NCBI nr
Match: KAG6588361.1 (hypothetical protein SDJN03_16926, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M+QN+SS++IGLVGAA+TLSAY Q W+SPT+ IT GLLVL+FGLLV EGFISI
Sbjct: 36 MNQNLSSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 88

[Close]

BLAST of Sed0001905 vs. NCBI nr
Match: KAG7022210.1 (hypothetical protein SDJN02_15940, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M+QN+SS++IGLVGAA+TLSAY Q W+SPT+ IT GLLVL+FGLLV EGFISI
Sbjct: 34 MNQNLSSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 86

[Close]

BLAST of Sed0001905 vs. NCBI nr
Match: XP_016562272.1 (PREDICTED: uncharacterized protein LOC107861446 [Capsicum annuum] >PHT29568.1 hypothetical protein CQW23_30793 [Capsicum baccatum] >PHT91889.1 hypothetical protein T459_07002 [Capsicum annuum] >PHU27680.1 hypothetical protein BC332_06012 [Capsicum chinense])

HSP 1 Score: 79.7 bits (195), Expect = 8.3e-12
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M+QN++S++IGLVGAA TL AY QPW++PT  IT+GL+ L+FGLLVREGFIS+
Sbjct: 1  MNQNITSLLIGLVGAAFTLGAYSQPWMTPTQSITMGLVTLMFGLLVREGFISL 53

[Close]

BLAST of Sed0001905 vs. ExPASy TrEMBL
Match: A0A6J1F0Z9 (uncharacterized protein LOC111441164 OS=Cucurbita moschata OX=3662 GN=LOC111441164 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M+QN+SS++IGLVGAA+TLSAY Q W+SPT+ IT GLLVL+FGLLV EGFISI
Sbjct: 1  MNQNLSSLLIGLVGAALTLSAYSQTWVSPTECITAGLLVLVFGLLVNEGFISI 53

[Close]

BLAST of Sed0001905 vs. ExPASy TrEMBL
Match: A0A2G2V9I1 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_30793 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-12
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M+QN++S++IGLVGAA TL AY QPW++PT  IT+GL+ L+FGLLVREGFIS+
Sbjct: 1  MNQNITSLLIGLVGAAFTLGAYSQPWMTPTQSITMGLVTLMFGLLVREGFISL 53

[Close]

BLAST of Sed0001905 vs. ExPASy TrEMBL
Match: A0A6J1DXU0 (uncharacterized protein LOC111025520 OS=Momordica charantia OX=3673 GN=LOC111025520 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-12
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M++N+SS++IGLVGAAITLSAY Q WISPT+ IT+GLLVL+FGLLV EG IS+
Sbjct: 40 MNRNLSSLLIGLVGAAITLSAYSQTWISPTECITVGLLVLIFGLLVNEGLISL 92

[Close]

BLAST of Sed0001905 vs. ExPASy TrEMBL
Match: A0A2G3D9L9 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_06012 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-12
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M+QN++S++IGLVGAA TL AY QPW++PT  IT+GL+ L+FGLLVREGFIS+
Sbjct: 1  MNQNITSLLIGLVGAAFTLGAYSQPWMTPTQSITMGLVTLMFGLLVREGFISL 53

[Close]

BLAST of Sed0001905 vs. ExPASy TrEMBL
Match: A0A2G3ACA8 (uncharacterized protein LOC107861446 OS=Capsicum annuum OX=4072 GN=LOC107861446 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-12
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MDQNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          M+QN++S++IGLVGAA TL AY QPW++PT  IT+GL+ L+FGLLVREGFIS+
Sbjct: 1  MNQNITSLLIGLVGAAFTLGAYSQPWMTPTQSITMGLVTLMFGLLVREGFISL 53

[Close]

BLAST of Sed0001905 vs. TAIR 10
Match: AT3G29034.1 (unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 8.2e-10
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 3  QNVSSMIIGLVGAAITLSAYYQPWISPTDGITIGLLVLLFGLLVREGFISI 54
          +N+ S++IGLVG A+TL AY Q ++ P   I  GL VL FGLLV EGFIS+
Sbjct: 36 RNMQSLVIGLVGGALTLGAYSQTYVDPGKSIGAGLFVLFFGLLVSEGFISL 86

The following BLAST results are available for this feature:

BLAST of Sed0001905 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531694.1	2.8e-12	75.47	uncharacterized protein LOC111793862 [Cucurbita pepo subsp. pepo]	[more]
XP_022933884.1	2.8e-12	75.47	uncharacterized protein LOC111441164 [Cucurbita moschata]	[more]
KAG6588361.1	2.8e-12	75.47	hypothetical protein SDJN03_16926, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7022210.1	2.8e-12	75.47	hypothetical protein SDJN02_15940, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_016562272.1	8.3e-12	67.92	PREDICTED: uncharacterized protein LOC107861446 [Capsicum annuum] >PHT29568.1 hy...	[more]

BLAST of Sed0001905 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0Z9	1.4e-12	75.47	uncharacterized protein LOC111441164 OS=Cucurbita moschata OX=3662 GN=LOC1114411...	[more]
A0A2G2V9I1	4.0e-12	67.92	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_30793 PE=4 SV=1	[more]
A0A6J1DXU0	4.0e-12	73.58	uncharacterized protein LOC111025520 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A2G3D9L9	4.0e-12	67.92	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_06012 PE=4 SV=1	[more]
A0A2G3ACA8	4.0e-12	67.92	uncharacterized protein LOC107861446 OS=Capsicum annuum OX=4072 GN=LOC107861446 ...	[more]

BLAST of Sed0001905 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29034.1	8.2e-10	56.86	unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacter...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001905.1	Sed0001905.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane