Sed0001893 (gene) Chayote v1

Overview


Name	Sed0001893
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Growth-regulating factor
Location	LG02: 40598191 .. 40600955 (+)
RNA-Seq Expression	Sed0001893
Synteny	Sed0001893

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAACTCTCAATTTCTTCTTCATTTCTGTGTGTTTGTTTAAAGGTTCTATGAGGATCAGAAAACGCCAGATTCCATTACCCTTTTCCTCCCTTTCCCCTCTCTCAGATCCCGCCGCCCTCCTCCTCCTCCGCCGCCCGGTGCAACTCCGACGCCCCACCTCCGCCCTTCCCCCGCCGCCGGTTAGTATTCCAATCCAAACACACCCTTTTTGTCTTTTATTTTGTTTGCTAATCGGGATCTTGATTTGGGATTTTGTTCTAATTAAACTGCACCCCCCTCTCTTGTTATTTGGTCCCTCAAATTGTGTGTATTTGCATCCTTTACTCATATGGGGTTTTTGTTTGTGTACACTGCAGGAGCAACATCATCATCATCATGATACCACCAGGTAAAAACTCTCTCTAAGCCTCTGAGATCAATTTACAAAACCCCCTATTTCTCTTTTTAACACAAATTACACCCATCATTTAAAATAAAATAAAAAAATAAATGTATATGTTTATTTTCATTAATTAATTAATTAATTTATTTTTTATTTTTGTGAGTGGAAACACTGTGTGTGTGTTTGGATGTTTTTATTTATATATATATATATATATATATATATATATTTTTCATTTCTCTGCATGTTCTTTGCTGGTCCACTGCACCCCTCTTCTTCTTCTCCATTATCTCTCTCTCTCTCTCTCTTTAATCCACTTTTTTTTTTTTAATTAGTCTTTTCTCAACTTATTACTTTTCTTTTCTTATATTTCTCTGCATATTATTTGCACTAATATTATTTATTCACTCTTCATCTCTATATGTGTGTTGTGGGTTTGATTTTAGGGACATAAAGCTATTTGGTGCACAAACAAGCAATGGGGTTCTTCCACAATCCACCTCTAATTCACCTCAAGGTCTCATCATCGATCCCCCCCCCCCTTTTTTTATTCATCAAACTCATATTTACATTATCATTCTCACTTACATTTCCCTTAACGAATGTTAAATCATTTATCCAACAACTGCATAACTGAATCAGTCTGAACGGGTAGTTATTATCGAAAGATTATGAGTTCGAATGTCTAGTTACTGAAAAAATTGCACCACTCTCAAACTCAACCTTAGAGCTAGCTTTTGAATTCACATGTGGATTTACAATTATTGTTTGGCAGTCAAAACTTGAGTACATAATAATATATCAAAACTACAACATTATTCCCTATTCTCAAACTAGGTGTAATGTTATCTTCTTCTAAATTGATATTGATGATGGGCATACACACCGTCACTTATGAACTTATGTTGTTGGGTTTAGTATATGATTTATAACACGAATTAAAAAGAAGCAAGTTGTATTTGAATTCTCCTTGTCAAAAATTATTTGATCATATACTCAAAGTATATATTATATGTCCAACCAATATAATCTTTGTCATGCTTCTGTCTTCATCAAATATATTATTTTTGCTTTGATTCTTTGATGATCGAATATGCAATGCTACTTTGTATCATGGGTATCGTATAATGGTTAAAAATAGTCTTAAGAAACCAAAAATTTATGGGTTCAATCCACTTTGGTCACCTGCTTACTAATTCATTTTTTATGAATTTTCTTGACATCCAAATATCATAGAGTTAGTTAGACAATATATTGCGTGAAAATAGTCGAGATGCACATAAGCTAGTCCAAACATTCACAAATATCAATAAAAACAAAGACAAGTTAATATGTGTATTTTTTTAAACCATTATGAAGTGACGTAGGGGTCAAGAGGGTCTTGGAAACGAAGAGGCGATGTGTTCGTGGTAGGCACCTACCTGCATGCCCGGACAATCATGGATATCTGAAAATAAATAAATAGATGCATTTTTTTCAATCTATTCTCATGTTGGGATTTGTTTGTTTGTTGTAGTAATGGGGGAGTGGTGCGAGAGGGAGAAGGCATTTCCATTAAAGAAGAGGAGAGGGAGCTTTAAGAGGCCAAGTGACCATGGAGAAGATGAAGATCAAATGATCACCACAACAGTGAAGACAATGATGATCAACAACAAATGCCCATTGCCACAAAAGCAAGAACAACAAGAACATCAATCCAATCCGCCCGGTCTCAACCTCCCCGGTAAGAAGAAATCCAGAGGCGGCGTGTTGATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGTTGCTGCCAACAGACTCTCGTCGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGCTCCTTGGCTGCTACCGCACCGAAGAGTGTTGTCATTGTTGAGAAAGAAGATGAGAAGAAGCCATCGCCATCCCCACTGTCACCATTGATGGTAACTAGTAAGAAGAGAATGAAGCTCGGTGTGGTGAAAGCGAGGTCGATGAGCAGCTTACTCGGCCAACCCGATTGCACGATCGCAGCCGTGCCGCCTCCGCCTCTACCTCCAACACCGGAGGATGACAACATGGACTGAGTAAGGAAGCAATAATTTGTTACATAAGTGTGTGATCTCTGATCTCTCTTGGGTAATTTTCGGTTACTGTCTAAAGTTTTTAATTTTCATGGTTAATATGTTTGAAATTTTCAATTAGATTACTATGTAAAGAAATTGTCGAAAAGAAGTTGATACGTCGTTAAATTACTGTTTTATAATATATCTAGACATTTAGACATGTACTGTATTTCTACGTGTGAAATTCAGTCTGTCCATTAGTAAAATTTGAACTATTCGTGAA

mRNA sequence

CACAAACTCTCAATTTCTTCTTCATTTCTGTGTGTTTGTTTAAAGGTTCTATGAGGATCAGAAAACGCCAGATTCCATTACCCTTTTCCTCCCTTTCCCCTCTCTCAGATCCCGCCGCCCTCCTCCTCCTCCGCCGCCCGGTGCAACTCCGACGCCCCACCTCCGCCCTTCCCCCGCCGCCGGAGCAACATCATCATCATCATGATACCACCAGGGACATAAAGCTATTTGGTGCACAAACAAGCAATGGGGTTCTTCCACAATCCACCTCTAATTCACCTCAAGTAATGGGGGAGTGGTGCGAGAGGGAGAAGGCATTTCCATTAAAGAAGAGGAGAGGGAGCTTTAAGAGGCCAAGTGACCATGGAGAAGATGAAGATCAAATGATCACCACAACAGTGAAGACAATGATGATCAACAACAAATGCCCATTGCCACAAAAGCAAGAACAACAAGAACATCAATCCAATCCGCCCGGTCTCAACCTCCCCGGTAAGAAGAAATCCAGAGGCGGCGTGTTGATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGTTGCTGCCAACAGACTCTCGTCGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGCTCCTTGGCTGCTACCGCACCGAAGAGTGTTGTCATTGTTGAGAAAGAAGATGAGAAGAAGCCATCGCCATCCCCACTGTCACCATTGATGGTAACTAGTAAGAAGAGAATGAAGCTCGGTGTGGTGAAAGCGAGGTCGATGAGCAGCTTACTCGGCCAACCCGATTGCACGATCGCAGCCGTGCCGCCTCCGCCTCTACCTCCAACACCGGAGGATGACAACATGGACTGAGTAAGGAAGCAATAATTTGTTACATAAGTGTGTGATCTCTGATCTCTCTTGGGTAATTTTCGGTTACTGTCTAAAGTTTTTAATTTTCATGGTTAATATGTTTGAAATTTTCAATTAGATTACTATGTAAAGAAATTGTCGAAAAGAAGTTGATACGTCGTTAAATTACTGTTTTATAATATATCTAGACATTTAGACATGTACTGTATTTCTACGTGTGAAATTCAGTCTGTCCATTAGTAAAATTTGAACTATTCGTGAA

Coding sequence (CDS)

ATGAGGATCAGAAAACGCCAGATTCCATTACCCTTTTCCTCCCTTTCCCCTCTCTCAGATCCCGCCGCCCTCCTCCTCCTCCGCCGCCCGGTGCAACTCCGACGCCCCACCTCCGCCCTTCCCCCGCCGCCGGAGCAACATCATCATCATCATGATACCACCAGGGACATAAAGCTATTTGGTGCACAAACAAGCAATGGGGTTCTTCCACAATCCACCTCTAATTCACCTCAAGTAATGGGGGAGTGGTGCGAGAGGGAGAAGGCATTTCCATTAAAGAAGAGGAGAGGGAGCTTTAAGAGGCCAAGTGACCATGGAGAAGATGAAGATCAAATGATCACCACAACAGTGAAGACAATGATGATCAACAACAAATGCCCATTGCCACAAAAGCAAGAACAACAAGAACATCAATCCAATCCGCCCGGTCTCAACCTCCCCGGTAAGAAGAAATCCAGAGGCGGCGTGTTGATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGTTGCTGCCAACAGACTCTCGTCGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGCTCCTTGGCTGCTACCGCACCGAAGAGTGTTGTCATTGTTGAGAAAGAAGATGAGAAGAAGCCATCGCCATCCCCACTGTCACCATTGATGGTAACTAGTAAGAAGAGAATGAAGCTCGGTGTGGTGAAAGCGAGGTCGATGAGCAGCTTACTCGGCCAACCCGATTGCACGATCGCAGCCGTGCCGCCTCCGCCTCTACCTCCAACACCGGAGGATGACAACATGGACTGA

Protein sequence

MRIRKRQIPLPFSSLSPLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDIKLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTVKTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKKPSPSPLSPLMVTSKKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD

Homology

[Close]

BLAST of Sed0001893 vs. NCBI nr
Match: XP_022930465.1 (uncharacterized protein LOC111436877 isoform X1 [Cucurbita moschata])

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-73
Identity = 175/283 (61.84%), Postives = 193/283 (68.20%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
           MRIRKRQ+PLP +  S   P+SDP   L    P     PT + P   EQ  H  D TR+ 
Sbjct: 1   MRIRKRQLPLPLAFSSGPRPVSDP---LHAHAP-----PTVSNPMEKEQQEHIEDNTRER 60

Query: 61  KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
             F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR       DH            
Sbjct: 61  CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120

Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
                NN      K++Q+EHQS   GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180

Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
           LVGYSLCEHHLGKGRLRSMNSVRSRS AAT      +VEKED KK  PSPSP  PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240

Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
           KKR KLGVVKARS+SSLLGQPD  +A  PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDSVMALAPPPPLPPTPPDDNID 245

[Close]

BLAST of Sed0001893 vs. NCBI nr
Match: XP_038903168.1 (uncharacterized protein LOC120089834 [Benincasa hispida])

HSP 1 Score: 286.6 bits (732), Expect = 2.3e-73
Identity = 178/309 (57.61%), Postives = 210/309 (67.96%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLSPLSDPAALLLLRRPVQLRRPTSALPP-----------PPEQHHH 60
           MRIRKRQ+PLPFSS   LSDP    LLR    ++ P S+ PP              Q  H
Sbjct: 1   MRIRKRQLPLPFSS---LSDP----LLRHSPPVQLPPSSDPPNLHPFPSDNASDNNQKLH 60

Query: 61  HHDTTRDIKLFGAQT-SNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPS----- 120
            HD +R   + GA+T +NGVLP STS+S Q  G WCEREKAFPLKKRRGSF+R +     
Sbjct: 61  QHD-SRKTTVIGAETINNGVLPLSTSSSSQGGGRWCEREKAFPLKKRRGSFERSNNDQDD 120

Query: 121 ---DHGEDEDQMITTTVKTMMINNKCPLPQKQEQQEHQSNPP----GLNLPGKKKSRGGV 180
              D  E++DQ++TT+   ++ + K  +  K  ++   S+      GL+L GKK+SRGG 
Sbjct: 121 NDEDDDEEDDQVVTTSTVKLLPDEKKTMKTKMNKKSTLSSQKQTKLGLDLVGKKRSRGGA 180

Query: 181 LMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSL-AATAPKSVVIV 240
           LMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN+VRSRSL AATA    V+V
Sbjct: 181 LMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAATATPKNVVV 240

Query: 241 EKEDEKKPSPSPL-----SPLMVTSKKRMKLGVVKARSMSSLLGQPDCTIAA-VPPPPLP 279
           + EDEKKPSPSP      S L + SKKRMKLGVVKARS+SSLLGQPD  +A   PPPP P
Sbjct: 241 DVEDEKKPSPSPFPAPPSSSLTLASKKRMKLGVVKARSISSLLGQPDGMVATPPPPPPPP 300

[Close]

BLAST of Sed0001893 vs. NCBI nr
Match: XP_023521667.1 (uncharacterized protein LOC111785505 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.6 bits (727), Expect = 8.9e-73
Identity = 173/283 (61.13%), Postives = 189/283 (66.78%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
           MRIRKRQ+PLP +  S   P+SDP           L     A P   EQ  H  D TR+ 
Sbjct: 1   MRIRKRQLPLPLAFSSGPRPVSDP-----------LHAHAHAPPMEKEQQEHIEDNTRER 60

Query: 61  KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
             F A+TSNGVLPQSTS SPQV+G W ERE+ FPLKKRR       DH            
Sbjct: 61  CEFDAETSNGVLPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120

Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
                NN      K++Q+EHQS   GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180

Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
           LVGYSLCEHHLGKGRLRSMNSVRSRS  AT      +VEKED KK  PSPSP  PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSPAT------VVEKEDNKKPSPSPSPRPPLTLTS 240

Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
           KKR KLGVVKARS+SSLLGQPD  +A  PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDGVMAVAPPPPLPPTPPDDNID 242

[Close]

BLAST of Sed0001893 vs. NCBI nr
Match: XP_022930542.1 (uncharacterized protein LOC111436877 isoform X2 [Cucurbita moschata])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-72
Identity = 172/283 (60.78%), Postives = 189/283 (66.78%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
           MRIRKRQ+PLP +  S   P+SDP                 A P   EQ  H  D TR+ 
Sbjct: 1   MRIRKRQLPLPLAFSSGPRPVSDPL-------------HAHAPPTEKEQQEHIEDNTRER 60

Query: 61  KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
             F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR       DH            
Sbjct: 61  CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120

Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
                NN      K++Q+EHQS   GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180

Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
           LVGYSLCEHHLGKGRLRSMNSVRSRS AAT      +VEKED KK  PSPSP  PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240

Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
           KKR KLGVVKARS+SSLLGQPD  +A  PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDSVMALAPPPPLPPTPPDDNID 240

[Close]

BLAST of Sed0001893 vs. NCBI nr
Match: KAG6596241.1 (hypothetical protein SDJN03_09421, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-71
Identity = 171/283 (60.42%), Postives = 188/283 (66.43%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
           MRIRKRQ+PLP +  S   P+SDP                 A P   EQ  H  D TR+ 
Sbjct: 1   MRIRKRQLPLPLAFSSGPRPVSDPL-------------HAHAPPTEKEQQEHIEDNTRER 60

Query: 61  KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
             F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR       DH            
Sbjct: 61  CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120

Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
                NN      K++Q+EHQS   GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180

Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
           LVGYSLCEHHLGKGRLRSMNSVRSRS AAT      +VEKED KK  PSPSP  PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240

Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
           KKR KL VVKARS+SSLLGQPD  +A  PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLCVVKARSISSLLGQPDGVMAVAPPPPLPPTPPDDNID 240

[Close]

BLAST of Sed0001893 vs. ExPASy TrEMBL
Match: A0A6J1EWY8 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 8.7e-74
Identity = 175/283 (61.84%), Postives = 193/283 (68.20%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
           MRIRKRQ+PLP +  S   P+SDP   L    P     PT + P   EQ  H  D TR+ 
Sbjct: 1   MRIRKRQLPLPLAFSSGPRPVSDP---LHAHAP-----PTVSNPMEKEQQEHIEDNTRER 60

Query: 61  KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
             F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR       DH            
Sbjct: 61  CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120

Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
                NN      K++Q+EHQS   GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180

Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
           LVGYSLCEHHLGKGRLRSMNSVRSRS AAT      +VEKED KK  PSPSP  PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240

Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
           KKR KLGVVKARS+SSLLGQPD  +A  PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDSVMALAPPPPLPPTPPDDNID 245

[Close]

BLAST of Sed0001893 vs. ExPASy TrEMBL
Match: A0A6J1EQU2 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 5.6e-73
Identity = 172/283 (60.78%), Postives = 189/283 (66.78%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
           MRIRKRQ+PLP +  S   P+SDP                 A P   EQ  H  D TR+ 
Sbjct: 1   MRIRKRQLPLPLAFSSGPRPVSDPL-------------HAHAPPTEKEQQEHIEDNTRER 60

Query: 61  KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
             F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR       DH            
Sbjct: 61  CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120

Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
                NN      K++Q+EHQS   GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180

Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
           LVGYSLCEHHLGKGRLRSMNSVRSRS AAT      +VEKED KK  PSPSP  PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240

Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
           KKR KLGVVKARS+SSLLGQPD  +A  PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDSVMALAPPPPLPPTPPDDNID 240

[Close]

BLAST of Sed0001893 vs. ExPASy TrEMBL
Match: A0A0A0LGX5 (Growth-regulating factor OS=Cucumis sativus OX=3659 GN=Csa_3G806230 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 6.4e-69
Identity = 173/307 (56.35%), Postives = 203/307 (66.12%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLSPLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHD-----TTR 60
           MRIRKRQ+PLP  + S LSDP        PVQL  P+S  P  P  ++          +R
Sbjct: 1   MRIRKRQLPLP--TFSSLSDP--------PVQLPLPSSDPPINPLDNNQKQKLLQQYDSR 60

Query: 61  DIKLFGAQT-SNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPS-----DHGEDE 120
           +  L GA+T +N +LP S+S+S Q  G WCE+EKAFPLKKRRGSF+R S     DH +D 
Sbjct: 61  ETILIGAETINNALLPHSSSSSSQGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDS 120

Query: 121 DQMITTTV---KTMM---INNKCPLPQKQEQQEHQSNPPGLN-LPGKKKSRGGVLMEGSR 180
           D  + T +   K MM   +N KC L QKQ +        GL+ + GKK+SRGG LMEGSR
Sbjct: 121 DHQVATKLQDEKKMMKTKMNKKCTLSQKQSK-------VGLDAVVGKKRSRGGALMEGSR 180

Query: 181 CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK 240
           CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN+VR+RSL A  PK++V+VEK DEKK
Sbjct: 181 CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEK-DEKK 240

Query: 241 PSPS-----------PLSPLMVTSKKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPT 279
           PSPS           P S   +TSKKRMKLGVVKARSMSSLLGQP+    A P  P P T
Sbjct: 241 PSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSP-PST 288

[Close]

BLAST of Sed0001893 vs. ExPASy TrEMBL
Match: A0A6J1F795 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111441497 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 6.4e-69
Identity = 178/312 (57.05%), Postives = 211/312 (67.63%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLS--PLSDPAALLLLRR--PVQLRRPTSALPPP------------- 60
           MRIRKRQ+PLPFSSLS  PLSDP    LLRR  PVQL     +  PP             
Sbjct: 1   MRIRKRQVPLPFSSLSPLPLSDP----LLRRTPPVQLHLQLPSSDPPNLHPYACDSAAYH 60

Query: 61  ------PEQHHHHHDTTRDIKLFGAQTSNGVLPQSTSNSPQV-MGEWCEREKAFPLKKRR 120
                  +     HD +R+  +FGA+ SNGVLP S S+SPQV  G+WCER+K FPLKKRR
Sbjct: 61  TNNALGKKDQLEQHD-SRETTVFGAEASNGVLPLS-SSSPQVGDGQWCERDKDFPLKKRR 120

Query: 121 GSFKRPSDHGED--EDQMITTTVKTMMINNKCPLPQKQEQQEHQSNPP-GLNLPGKKKSR 180
           GSF+R SD  ++  +DQ  T      M +    LP  ++  +++  P  GLNL GKK+SR
Sbjct: 121 GSFERQSDDDQNNADDQTTTAAAAAAMES----LPDHKKTTKNKKQPKLGLNLAGKKRSR 180

Query: 181 GGVLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLAATAP--KS 240
           GG LMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN+VRSRSLAA A   K+
Sbjct: 181 GGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKN 240

Query: 241 VVIVEKEDEKKPSPSPLSP---LMVTSKKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPL 279
           +V V+K DEKKP P P  P   L + SKKR KLG+VKARS+SSLLGQPD  +AA+PPPP 
Sbjct: 241 IVTVDK-DEKKPPPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPD-GMAAIPPPPP 300

[Close]

BLAST of Sed0001893 vs. ExPASy TrEMBL
Match: A0A6J1J4K8 (Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111481709 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 175/310 (56.45%), Postives = 208/310 (67.10%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSLS--PLSDPAALLLLRR--PVQLRRPTSALPPP------------- 60
           MRIRKRQ+PL FSSLS  PLSDP    LLRR  PVQL     +  PP             
Sbjct: 1   MRIRKRQVPLSFSSLSPLPLSDP----LLRRTPPVQLHLQLPSSDPPNLHPYACDSAADH 60

Query: 61  ------PEQHHHHHDTTRDIKLFGAQTSNGVLPQSTSNSPQV-MGEWCEREKAFPLKKRR 120
                  +     HD +R+  +FGA+TSNGVLP S S+SPQV  G+WCER+K FPLKKRR
Sbjct: 61  TNNALGKKDQLEQHD-SRETTVFGAETSNGVLPLS-SSSPQVGDGQWCERDKEFPLKKRR 120

Query: 121 GSFKRPSDHGEDE-DQMITTTVKTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGG 180
           GSF+R SD  ++  D   TT ++++  + K    +KQ +        GLNL GKK+SRGG
Sbjct: 121 GSFERQSDDDQNNADDQTTTAMESLQDHKKTTKNKKQPKL-------GLNLAGKKRSRGG 180

Query: 181 VLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLAATAP--KSVV 240
            LMEGS CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN+VRSRSLAA A   K++V
Sbjct: 181 ALMEGSLCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240

Query: 241 IVEKEDEKKPSPSPLSP---LMVTSKKRMKLGVVKARSMSSLLGQPDCTIAAVP--PPPL 279
            V+K DEKKP P P  P   L + SKKR KLG+VKARS+SSLLGQPD  +AA+P  PPP 
Sbjct: 241 TVDK-DEKKPPPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPD-GMAAIPPSPPPS 295

[Close]

BLAST of Sed0001893 vs. TAIR 10
Match: AT2G42040.1 (CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-29
Identity = 115/292 (39.38%), Postives = 134/292 (45.89%), Query Frame = 0


Query: 1   MRIRKRQIPLPFSSL--SPLSDPAALLLLRRPVQLRR---------------PTSALPPP 60
           MRIRKRQ+PLP SSL   PLSD   L   R P    R                  +LPPP
Sbjct: 1   MRIRKRQVPLPLSSLLPVPLSD---LYFNRSPTATARYFRGGYKDGGDDFGSLQLSLPPP 60

Query: 61  ---------------PEQHHHHHDTTRDIKL---FGAQTSNGVLPQSTSNSPQVMGEWCE 120
                           E+     D   D+ +     A  S  V P+  S S   + E  +
Sbjct: 61  SQISDRLIQRDLIKKKEEVKALDDDNGDVDVKSRTDASGSKNVNPRGESVSSIQVVE--K 120

Query: 121 REKAFPLKKRRGSFKRPSDHGEDEDQMITTTVKTMMINNKCPLPQKQEQQEHQSNPPGLN 180
            EK   L+KRRG F    D+ ++ED                         E  S   G  
Sbjct: 121 NEKVVSLRKRRG-FINFEDYEDEED-------------------------EEASGGGGRI 180

Query: 181 LPGKKKSR--GGVLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRS 240
             GKKK++  GG L EGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGR+RSMN      
Sbjct: 181 NKGKKKAKKSGGGLEEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRVRSMNKSGG-- 240

Query: 241 LAATAPKSVVIVEKEDEKKPSPSPLSPLMVTSKKRMKLGVVKARSMSSLLGQ 256
                 K  V+VE                   KKR+KLG+VKARS+SSLLGQ
Sbjct: 241 -GRGGEKKAVVVE-----------------VKKKRVKLGMVKARSISSLLGQ 241

[Close]

BLAST of Sed0001893 vs. TAIR 10
Match: AT5G53660.1 (growth-regulating factor 7 )

HSP 1 Score: 43.1 bits (100), Expect = 4.2e-04
Identity = 22/58 (37.93%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 142 PGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 200
           P    P   K+  G L E  RC R +G+ WRC ++ +  +  CE HL +GR RS   V
Sbjct: 93  PSSASPCNNKNIAGDL-EPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHV 149

The following BLAST results are available for this feature:

BLAST of Sed0001893 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930465.1	1.8e-73	61.84	uncharacterized protein LOC111436877 isoform X1 [Cucurbita moschata]	[more]
XP_038903168.1	2.3e-73	57.61	uncharacterized protein LOC120089834 [Benincasa hispida]	[more]
XP_023521667.1	8.9e-73	61.13	uncharacterized protein LOC111785505 [Cucurbita pepo subsp. pepo]	[more]
XP_022930542.1	1.2e-72	60.78	uncharacterized protein LOC111436877 isoform X2 [Cucurbita moschata]	[more]
KAG6596241.1	1.7e-71	60.42	hypothetical protein SDJN03_09421, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0001893 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001893 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWY8	8.7e-74	61.84	Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1	[more]
A0A6J1EQU2	5.6e-73	60.78	Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1	[more]
A0A0A0LGX5	6.4e-69	56.35	Growth-regulating factor OS=Cucumis sativus OX=3659 GN=Csa_3G806230 PE=3 SV=1	[more]
A0A6J1F795	6.4e-69	57.05	Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111441497 PE=3 SV=1	[more]
A0A6J1J4K8	3.5e-67	56.45	Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111481709 PE=3 SV=1	[more]

BLAST of Sed0001893 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42040.1	1.7e-29	39.38	CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 ...	[more]
AT5G53660.1	4.2e-04	37.93	growth-regulating factor 7	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014977	WRC domain	PFAM	PF08879	WRC	coord: 159..199 e-value: 1.9E-15 score: 56.2
IPR014977	WRC domain	PROSITE	PS51667	WRC	coord: 157..201 score: 21.619141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..278
None	No IPR available	PANTHER	PTHR31602:SF19	OS02G0773600 PROTEIN	coord: 45..259
IPR031137	Growth-regulating factor	PANTHER	PTHR31602	FAMILY NOT NAMED	coord: 45..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001893.1	Sed0001893.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus