Sed0001884 (gene) Chayote v1

Overview


Name	Sed0001884
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein RMD5 homolog
Location	LG10: 5606987 .. 5611643 (+)
RNA-Seq Expression	Sed0001884
Synteny	Sed0001884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAAACAAAAAAAAAAAACATAATTCTCCGTATTTTCTTTGACTGTATATATAAAAGCTGTATACGGAAGCGAAAGGAAAAAAATACTACTGATTCGGGTTCTTACTTCCAACCAAGGTTTCTTCTCTCTTCTTCTTCTTCTCGCTGATCTATGTATTGCTCTTAATTTTCCTCAATACTATATTCAGATCTAATTTCAGTTTTTGTTTCTGCATTTATCTCTGTTGAATCCAGTTTCATCTTCTTGTCGGGATAAATTTCTGTATCTGAATCGATTCGCTATTTTCAGATTCGAATCTCTTCTTTTCCTTGTTCCAATCCATCTATTTCTTAGATTTTAGTTTTTATTTTTATGTTTACTTGTGTCGGTTTCATAGGAATATCTTTTGGACTGCGAATTGTAGATTTGTATTTTTTTTTTTTTTTTCTGCCTTTGAGTGTTTTGTTTTTGTTCCCTAATTTTTGGGGTTGTGCAAGTTTGTCCATTATTCTTCAAGTTGTTTACCCCGAATTGTGTCGTTTTACATTGGAGATCGTTTGGGGCCGAAGATAAATAGTTTATGTGTGCCGGGGCCACATCCTAGGGACGGGCAAGTAGTGCGTTGGGTATAAGGGAGCAAAGCTCCAATTTCCCGGTTTCAAAAAAAAAAAATCTACTGTTGAATAGCTAGGTAATTGGCCGAATTGTAGGTGGTAATTGTTTTTCATTATAAGTATTGAAGGGAGCGTTTCTACCACTGAATTTTCTTAATTTTTAGTGTTCTGGATGGTTTCAATTTCAGGGTACAAATTTCGTGTTATAATTTTGGTGATCACACTTTGCGAGGGTATATTATCTTTTAATGCTGCATATTCCTGTAGTTTATGATTTTTGCAGTTTGTCTTCAATATCAATTAATTATGCTGTCTTGTATCTACTTACATTATTTTCCTTATTTGTAATTTTGTTTCACTATGACTTCAATGCTCCTAATTACTTGATATTGTTTATGCATTAAGCTTGTTGTTAACGATTTTGTGCCACTGCCAAAACATTTCATAACAAAGCTGTTATTGAGAATGAAAATTTATGTGTATTCCCTTCCCTTTTCCCAACATTTTTTTTTATAGGAAACGAAAACTTTTCATTGATGTATGAAAAATTTCAGAAAATCCCTATTGAAAACAATTAAAACAAATGATGCCAATGAGTAAATAAGAAAGTAAGGACATAAGTACAAAAAGGAGGAAGTCTATGACTCCAAAATAACTTGGTGTGTTTGACCGATTCAATAGGAGGATCAAGATTGAGATGATCATCTTTAAATATCCTGTTGTTCCTCACAAGCCACTATTTCCAAAAGAAGGAAAATTGATTTATATTTCCTTCCCTTTTTTCCATCACTCATCACATCACCAATTGTTGATTTGTTCTTTTTTTTGGATATCCGTGAGTGTCTAGGCTAGTTGACCCTCACCTCGACTATTCTCACGGGATAACTCGTCTAACCCTAAATCGAAGGAAATTTGTAGAAAAATAATTCTTAAGTAGGTGGGCACTATGGATCAAACTCACGGCCTTTTTCTTTCTTAAGCTCTCTTGACTACTAGGCCAACCCATGAAAAGCTACTCGAAATATCAACTTATTAGTTATTTGACTTCTATAGAGTATGCATTACTACTAGGTCAATCCATGTTAAGTGTGTCTTTCATATAGAAATGGTAGACTCATAAAAATAAAACAAAAAGTTAGAAGTGATTAGACACTGAATAGACTCCAGTTAGCTCTACTACATCTGTTGTCTTACTCTTAAGCAAACAATCATCTCTATTATTTTGTTAATGTTTAATTGCCTTATTTAATCGAAAATATAATTTCCCCAGTACAGGAAAGGATATTTGTAGTATGCATACTCTGCAGAAAAATAAATATTTGATATTTGAGCTATTCATGGCTAGTGAACTGTAGATTTGGAATCTTTATTTAATTTTTGTTTCAGTTACAATATTGGCCCTAGTAATGGGTAAAGAACTCTAGTATGCGTTGATCATTATTTTATAATACTCAGACAAACATGTGCTTCTATGTTCTTTTCTTCCTAGCTGTAGGCGTGGACCGTGTAGGGCTTCACATTGTCCATAACTATTGCTTTAGTTTAGTACCTGTACAACATTTGTTATCAAGCTAGTCTTAAATCAAGTCAAGAAAAGGAAAAGAAATGCTGTTGGTTCATCTTCTTCATTTACATTCTCACTCTATGCTCTTTCTCTCAATTAGATGTAGACTGTAGTAGAAAAATGGTGATGAGATTGAAGAGGAAGATTTAGAGGCGTGTCGAATGGGAGTGGGGATAGTGATGATAAGTCTTAATTTTTTCGATCCTTAGATGTGGTAGCACAAGTCTAATGAAGTGGCAAAGAGAAAAAATCAATATATGAGCTCTGTTCGTGCCTTACATTTAGATTTTTTTTTTCTGACTAGTGGTCTGTAGGTCTGGATTCTTGACTTATTCAAATTGTACATACATTTAGCTGAATCTGAATATAACTTGAGAACTCATTGGTCTAATTCAATCTGATCTCAACTATTTAAGGATAACCTCCCTTGAAGGTAGTAGGTTGGAACCCCTACTCCTACTAAAATACATAAATAAAATGGGGAACTGAAGCAATGAAAACATTTTGGTCTAGTAAGATCGACATGATTTTCTCCTGCCGTTAATTTTTAGGTATTTTAGATTAGAGGTAGGTAAATGATTATACTTTAGAGACTCTGAAGTTTGACCTATTTCCTTAGCCGAACTCTATAAATTAATGGTATATTGCCTATTTTCTCTTTTCCATCTTCTTCCCTCTCCATTAGTATTTCTTGGCGTTCTTGTCTTTGGGACTTTTGGAACCTTGATATCTTTCCATTTCAATTATTTGGGCAATAATATTTGTTTATTATTATTGAGGATTGTTTGACAACTGAATTTGTTTTTCAGGTATTAGTCTAAGCAATGGAGTTGGATAACATTAAAGATGCATTTGATCGTGTGACAAAGAAACAAAAATTATTTTCTTCCAAGAGTCATGAAGTAGTTGATCAAGTCCATTTGGAACTGGAGCAGGTGCTACGAAAGATACAGTTAGCTGATGATCCTGAACGGCCAATTGATCTGAATTCAGTTTTTTCTGAACTCAAAACCAAATTAAAAGATATTGCCCCACTCACTCAGCTTGAAAGCACGCAGAAGGAGTTGATTTCTGCACTTACCAAGTATCCAAAGCTTGTTGAGAAATCTTTCAATCCAGATATATCAAAAGCTTATAGAAACATTGATTTTGATAGACATACTGTTAACCAGATTATTGCTAGTCATTTCTATCGTCAGGGTATGTTCGAACTTGGTGACTGCTTTATTAGTGAGGCTGGCGAGTCAGAATCTGCTGCCTCAATGAGATCACCATTTCAGGAAATGGATCAGATCCTTGAAGCCATGAAGTCCAGGAATCTAGAACCAGCTCTGAACTGGGCTCTGAATAACGCGAATAAACTTAAAGAATGTGGGTCGGATCTTTTGCTCAAACTTCATAGCATGCAGTTCATGGAGATTCTACAGAAGGGCGATAGACATGACGCTTTGATGTACGTTAGGACCTACCTAGCTCCTCTTGCATCCAACCACATGGCTGAACTTCAGAAGCTTATGGCTTGCCTCTTGTGGACCGGAAGGCTTGATTGCTCCCCATACTCCCAATCACAATTATTATTGTCAGTTACCAATTGGGATAAAGTTGCTGAGGAGCTTATAAGACAGTTTTGCCATTTTCTTGGTCAGTCCTATCAGAGTCCATTGGGGGTAACAGTTGCAGCAGGGGTCCAGGGATTGCCTCCCCTTCTGAAGTTTATGAATGTTATGACTGGGAAGAAACAGGAATGGCAATCTATGAAGCAGTTGCCTGTGCCGGTGGAGTTGGACAGTGAATTTCAGTTCCATTCCATCTTTGTTTGTCCTGTGTCTAAGGAACAGTCGACCGAAGAAAATCCACCTATGTTGATGCTGTGTGGCCATGTTCTCTGTAAGCAGTCTATCATGAAGATGTCTAAAAACAGCACAAAATCATTTAAGTGCCCTTATTGCCCAACAGACATTGATGCTACACGGTGTAGGCGATTGTACTTTTGACGCATACACAAAAGTCATGGTTAATGTTGTATGAAACTTCCTCTCTTCAACTGTACCAATATTTGCTGGATTTGGTTGTATGGTGTAGCAAAAAGGTGTGAAATGGGGGGTAAATTATGGTCAGTTGTGTACTGTTTGTTGCTGTATTTGTTGTAAATAGATATTCTTTCTATGCTTTGGGAATGTAGAGTAACTCACTCCACAGACATCTTTTAAATTTGGCAGTTTGGCAGATTTACAGCATGGGAATGTGCTTAGCTTCTTCTGGAGCTCACCTCCTATCAAATAAATATATTTTCTCCTTTATCTTTTCTACAAAAGTATAATTGAGATTAGGGAAACATGAGCACCAATCTTAATATAATTAGGTTCTTAACAAATTAGGATACATATCTGTCCCAAGGGGTGACGCGATGGTCGGAGGCTTAGACTTTGCATGTGTGCTCCCCTCAAGGTTTCAAGTTTGACTTACTTGTGACATTAATCCGTAGATACTTCCCGCG

mRNA sequence

TTAGAAACAAAAAAAAAAAACATAATTCTCCGTATTTTCTTTGACTGTATATATAAAAGCTGTATACGGAAGCGAAAGGAAAAAAATACTACTGATTCGGGTTCTTACTTCCAACCAAGGTATTAGTCTAAGCAATGGAGTTGGATAACATTAAAGATGCATTTGATCGTGTGACAAAGAAACAAAAATTATTTTCTTCCAAGAGTCATGAAGTAGTTGATCAAGTCCATTTGGAACTGGAGCAGGTGCTACGAAAGATACAGTTAGCTGATGATCCTGAACGGCCAATTGATCTGAATTCAGTTTTTTCTGAACTCAAAACCAAATTAAAAGATATTGCCCCACTCACTCAGCTTGAAAGCACGCAGAAGGAGTTGATTTCTGCACTTACCAAGTATCCAAAGCTTGTTGAGAAATCTTTCAATCCAGATATATCAAAAGCTTATAGAAACATTGATTTTGATAGACATACTGTTAACCAGATTATTGCTAGTCATTTCTATCGTCAGGGTATGTTCGAACTTGGTGACTGCTTTATTAGTGAGGCTGGCGAGTCAGAATCTGCTGCCTCAATGAGATCACCATTTCAGGAAATGGATCAGATCCTTGAAGCCATGAAGTCCAGGAATCTAGAACCAGCTCTGAACTGGGCTCTGAATAACGCGAATAAACTTAAAGAATGTGGGTCGGATCTTTTGCTCAAACTTCATAGCATGCAGTTCATGGAGATTCTACAGAAGGGCGATAGACATGACGCTTTGATGTACGTTAGGACCTACCTAGCTCCTCTTGCATCCAACCACATGGCTGAACTTCAGAAGCTTATGGCTTGCCTCTTGTGGACCGGAAGGCTTGATTGCTCCCCATACTCCCAATCACAATTATTATTGTCAGTTACCAATTGGGATAAAGTTGCTGAGGAGCTTATAAGACAGTTTTGCCATTTTCTTGGTCAGTCCTATCAGAGTCCATTGGGGGTAACAGTTGCAGCAGGGGTCCAGGGATTGCCTCCCCTTCTGAAGTTTATGAATGTTATGACTGGGAAGAAACAGGAATGGCAATCTATGAAGCAGTTGCCTGTGCCGGTGGAGTTGGACAGTGAATTTCAGTTCCATTCCATCTTTGTTTGTCCTGTGTCTAAGGAACAGTCGACCGAAGAAAATCCACCTATGTTGATGCTGTGTGGCCATGTTCTCTGTAAGCAGTCTATCATGAAGATGTCTAAAAACAGCACAAAATCATTTAAGTGCCCTTATTGCCCAACAGACATTGATGCTACACGGTGTAGGCGATTGTACTTTTGACGCATACACAAAAGTCATGGTTAATGTTGTATGAAACTTCCTCTCTTCAACTGTACCAATATTTGCTGGATTTGGTTGTATGGTGTAGCAAAAAGGTGTGAAATGGGGGGTAAATTATGGTCAGTTGTGTACTGTTTGTTGCTGTATTTGTTGTAAATAGATATTCTTTCTATGCTTTGGGAATGTAGAGTAACTCACTCCACAGACATCTTTTAAATTTGGCAGTTTGGCAGATTTACAGCATGGGAATGTGCTTAGCTTCTTCTGGAGCTCACCTCCTATCAAATAAATATATTTTCTCCTTTATCTTTTCTACAAAAGTATAATTGAGATTAGGGAAACATGAGCACCAATCTTAATATAATTAGGTTCTTAACAAATTAGGATACATATCTGTCCCAAGGGGTGACGCGATGGTCGGAGGCTTAGACTTTGCATGTGTGCTCCCCTCAAGGTTTCAAGTTTGACTTACTTGTGACATTAATCCGTAGATACTTCCCGCG

Coding sequence (CDS)

ATGGAGTTGGATAACATTAAAGATGCATTTGATCGTGTGACAAAGAAACAAAAATTATTTTCTTCCAAGAGTCATGAAGTAGTTGATCAAGTCCATTTGGAACTGGAGCAGGTGCTACGAAAGATACAGTTAGCTGATGATCCTGAACGGCCAATTGATCTGAATTCAGTTTTTTCTGAACTCAAAACCAAATTAAAAGATATTGCCCCACTCACTCAGCTTGAAAGCACGCAGAAGGAGTTGATTTCTGCACTTACCAAGTATCCAAAGCTTGTTGAGAAATCTTTCAATCCAGATATATCAAAAGCTTATAGAAACATTGATTTTGATAGACATACTGTTAACCAGATTATTGCTAGTCATTTCTATCGTCAGGGTATGTTCGAACTTGGTGACTGCTTTATTAGTGAGGCTGGCGAGTCAGAATCTGCTGCCTCAATGAGATCACCATTTCAGGAAATGGATCAGATCCTTGAAGCCATGAAGTCCAGGAATCTAGAACCAGCTCTGAACTGGGCTCTGAATAACGCGAATAAACTTAAAGAATGTGGGTCGGATCTTTTGCTCAAACTTCATAGCATGCAGTTCATGGAGATTCTACAGAAGGGCGATAGACATGACGCTTTGATGTACGTTAGGACCTACCTAGCTCCTCTTGCATCCAACCACATGGCTGAACTTCAGAAGCTTATGGCTTGCCTCTTGTGGACCGGAAGGCTTGATTGCTCCCCATACTCCCAATCACAATTATTATTGTCAGTTACCAATTGGGATAAAGTTGCTGAGGAGCTTATAAGACAGTTTTGCCATTTTCTTGGTCAGTCCTATCAGAGTCCATTGGGGGTAACAGTTGCAGCAGGGGTCCAGGGATTGCCTCCCCTTCTGAAGTTTATGAATGTTATGACTGGGAAGAAACAGGAATGGCAATCTATGAAGCAGTTGCCTGTGCCGGTGGAGTTGGACAGTGAATTTCAGTTCCATTCCATCTTTGTTTGTCCTGTGTCTAAGGAACAGTCGACCGAAGAAAATCCACCTATGTTGATGCTGTGTGGCCATGTTCTCTGTAAGCAGTCTATCATGAAGATGTCTAAAAACAGCACAAAATCATTTAAGTGCCCTTATTGCCCAACAGACATTGATGCTACACGGTGTAGGCGATTGTACTTTTGA

Protein sequence

MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSELKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKLKECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRLDCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNVMTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTDIDATRCRRLYF

Homology

[Close]

BLAST of Sed0001884 vs. NCBI nr
Match: XP_022963019.1 (protein RMD5 homolog [Cucurbita moschata] >XP_022963020.1 protein RMD5 homolog [Cucurbita moschata] >XP_022963021.1 protein RMD5 homolog [Cucurbita moschata] >XP_022963022.1 protein RMD5 homolog [Cucurbita moschata] >XP_022963023.1 protein RMD5 homolog [Cucurbita moschata] >XP_023517860.1 protein RMD5 homolog [Cucurbita pepo subsp. pepo] >XP_023517861.1 protein RMD5 homolog [Cucurbita pepo subsp. pepo] >XP_023517862.1 protein RMD5 homolog [Cucurbita pepo subsp. pepo] >KAG7026890.1 Protein RMD5-like A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 726.5 bits (1874), Expect = 1.2e-205
Identity = 362/389 (93.06%), Postives = 376/389 (96.66%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKDAFDRVTKKQKL SSKSHEVVDQ+HLELEQVL+KIQLAD+PE P+DL SVFSE
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQLADNPECPVDLKSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKEL +ALTKYPKLVEKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFISEAGESESAASMRSPFQEM QILEAMKSRNL+PALNWALNN+NKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
            ECGSDLLLKLHSMQFMEILQ GDRHDAL Y RTYLAPLASNH+AELQKLMACLLWTGRL
Sbjct: 181 NECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYSQSQ LLSVTNW+KVAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSQSQ-LLSVTNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVEL  EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. NCBI nr
Match: XP_008440495.1 (PREDICTED: protein RMD5 homolog A [Cucumis melo] >XP_008440496.1 PREDICTED: protein RMD5 homolog A [Cucumis melo] >KAA0036368.1 protein RMD5-like protein A [Cucumis melo var. makuwa] >TYK12763.1 protein RMD5-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 726.5 bits (1874), Expect = 1.2e-205
Identity = 362/389 (93.06%), Postives = 377/389 (96.92%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKDAFDRVTKKQKL SSKS EVVD++HLELEQVL+KIQLAD+PE PIDLNSVF+E
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDRIHLELEQVLQKIQLADNPECPIDLNSVFAE 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQL+STQKEL +ALTKYPKLVEKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLDSTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFISEAGESESAAS+RSPFQEM QILE+MKSRNLEPALNWALNN+NKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDAL Y RTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYS SQ LLSV NWDKVAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSHSQ-LLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVELD EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. NCBI nr
Match: XP_022132999.1 (protein RMD5 homolog A-like [Momordica charantia] >XP_022133000.1 protein RMD5 homolog A-like [Momordica charantia])

HSP 1 Score: 724.9 bits (1870), Expect = 3.6e-205
Identity = 360/389 (92.54%), Postives = 376/389 (96.66%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKD FDRVTKKQKL SSKS EV+DQ+HLELEQVL+K+QLAD+PE PIDLNSVFSE
Sbjct: 1   MELDSIKDVFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLADNPECPIDLNSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKEL  AL+KYPKL+EKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFI+EAGESESAASMRSPFQEM QILEAMKSRNLEPALNWALNN++KL
Sbjct: 121 HFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDAL Y RTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYSQSQ LLS TNW+KVAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSQSQ-LLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVELD EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. NCBI nr
Match: XP_004143429.1 (protein RMD5 homolog [Cucumis sativus] >XP_031743696.1 protein RMD5 homolog [Cucumis sativus] >KAE8647535.1 hypothetical protein Csa_003397 [Cucumis sativus])

HSP 1 Score: 724.2 bits (1868), Expect = 6.1e-205
Identity = 361/389 (92.80%), Postives = 376/389 (96.66%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKDAFDRVTKKQKL SSKS EVVDQ+HLELEQVL+KIQLAD+PE PID+NSVF+ 
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDQMHLELEQVLQKIQLADNPECPIDMNSVFAA 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKEL +ALTKYPKLVEKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFISEAGESESAAS+RSPFQEM QILE+MKSRNLEPALNWALNN+NKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
           K+CGSDLLLKLHSMQFMEILQKGDRHDAL Y RTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KDCGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYS SQ LLSV NWDKVAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSHSQ-LLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVELD EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. NCBI nr
Match: XP_023003688.1 (protein RMD5 homolog [Cucurbita maxima] >XP_023003689.1 protein RMD5 homolog [Cucurbita maxima] >XP_023003690.1 protein RMD5 homolog [Cucurbita maxima] >XP_023003691.1 protein RMD5 homolog [Cucurbita maxima])

HSP 1 Score: 722.6 bits (1864), Expect = 1.8e-204
Identity = 360/389 (92.54%), Postives = 375/389 (96.40%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKDAFDRVTKKQKL SSKSHEVVDQ+HLELEQVL+KIQLAD+PE P++L SVFSE
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQLADNPECPVNLKSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKEL +ALTKYPKLVEKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFISEAGESESAASMRSPFQEM QILEAMKSRNL+PALNWALNN+NKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
            ECGSDLLLKLHSMQFMEILQ GDRHDAL Y RTYLAPLASNH+AELQKLMACLLWTGRL
Sbjct: 181 NECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYSQSQ LLSVTNW+ VAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSQSQ-LLSVTNWENVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVEL  EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. ExPASy Swiss-Prot
Match: Q9T075 (Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 2.3e-122
Identity = 223/393 (56.74%), Postives = 296/393 (75.32%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERP-IDLNSVFS 60
           MEL +IKDAFDRV  KQKL  SK++E+V  +  E+++ L  ++     +   +D  S+ +
Sbjct: 1   MELKSIKDAFDRVATKQKLSYSKTNEIVHMLSQEIDKALSILEETPSSDTMLLDHRSILA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYR-NIDFDRHTVNQII 120
           ++K    +IAP+TQLE+T+KEL +ALTKYPK++EK  NPDISKAYR N++FD H VNQII
Sbjct: 61  DVKKVFMEIAPITQLEATEKELHAALTKYPKVLEKQLNPDISKAYRHNVEFDTHIVNQII 120

Query: 121 ASHFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNAN 180
           A+ FYRQGMF++GDCF++E GESE   S R  F EM +ILEAMK R+LEPALNWA++N++
Sbjct: 121 ANFFYRQGMFDIGDCFVAETGESE--CSTRQSFVEMYRILEAMKRRDLEPALNWAVSNSD 180

Query: 181 KLKECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTG 240
           KLKE  SDL +KLHS+ F+EI +  +  +A+ Y R ++A  A + + E+QKLM  LLW  
Sbjct: 181 KLKEARSDLEMKLHSLHFLEIARGKNSKEAIDYARKHIATFADSCLPEIQKLMCSLLWNR 240

Query: 241 RLDCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFM 300
           +LD SPYS+    LS   W+   +EL RQ+C+ LG+S +SPL +TV AG Q LP LLK+M
Sbjct: 241 KLDKSPYSE---FLSPALWNNAVKELTRQYCNLLGESSESPLSITVTAGTQALPVLLKYM 300

Query: 301 N-VMTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQ 360
           N VM  KK +WQ+M+QLPV  +L  EFQFHS+FVCPVSKEQS+++NPPM+M CGHVLCKQ
Sbjct: 301 NVVMANKKLDWQTMEQLPVDAQLSEEFQFHSVFVCPVSKEQSSDDNPPMMMSCGHVLCKQ 360

Query: 361 SIMKMSKNSTK-SFKCPYCPTDIDATRCRRLYF 390
           +I KMSKN +K SFKCPYCPTD+D +RCR+L+F
Sbjct: 361 TINKMSKNGSKSSFKCPYCPTDVDISRCRQLHF 388

[Close]

BLAST of Sed0001884 vs. ExPASy Swiss-Prot
Match: O59668 (LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC29A3.03c PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.7e-51
Identity = 127/381 (33.33%), Postives = 197/381 (51.71%), Query Frame = 0


Query: 34  ELEQVLR--KIQLADDPERPIDLNSVFSELKTKLKDIAPLTQLESTQKELISALTKYPKL 93
           ELE +L+  K     DP   +      SE   ++ D      L+ T+K+  ++L ++ K 
Sbjct: 24  ELESILKDAKKSCLKDPTTSMKELVACSEKTQQVFD-----DLKRTEKKFHTSLNRFGKT 83

Query: 94  VEKSFNPDIS--KAYRNIDFDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAASMRS 153
           +EK FN D+   K + + +  +  ++  ++ HF+RQG  EL   F  EAG  E + S+  
Sbjct: 84  LEKKFNFDLEDIKLHSSFESKKREIDTALSLHFFRQGDVELAHLFCKEAGIEEPSESLH- 143

Query: 154 PFQEMDQILEAMKSRNLEPALNWALNNANKLKECGSDLLLKLHSMQFM-EILQKGDRHDA 213
            F  +  I++ ++ ++L+  + WA      L+  GS L   L   + +   L   D   A
Sbjct: 144 VFTLLKSIVQGIRDKDLKLPIEWASQCRGYLERKGSSLEYTLQKYRLVSNYLTTKDIMAA 203

Query: 214 LMYVRTYLAPLASNHMAELQKLMACLLWTGR---LDCSPYSQSQLLLSVTN--------- 273
           + Y RT +A     H+A++QK M  L +  R   L  +  S   +   ++N         
Sbjct: 204 IRYCRTNMAEFQKKHLADIQKTMIALFFCSRNEVLSGTNDSHDSIHHIISNNAQLNIPQE 263

Query: 274 --------WDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNVMTGKKQEW 333
                   W  +    +R+FC  LG S +SPL + V AG   LP LLK  ++M  K  EW
Sbjct: 264 YIDVLDLDWKSLELLFVREFCAALGMSLESPLDIVVNAGAIALPILLKMSSIMKKKHTEW 323

Query: 334 QSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMSKNSTK 390
            S  +LPV + L S + FHS+F CPVSKEQ+TEENPPM+M CGHV+ K+S+ ++S+N ++
Sbjct: 324 TSQGELPVEIFLPSSYHFHSVFTCPVSKEQATEENPPMMMSCGHVIVKESLRQLSRNGSQ 383

[Close]

BLAST of Sed0001884 vs. ExPASy Swiss-Prot
Match: Q640V2 (E3 ubiquitin-protein ligase RMND5A OS=Xenopus tropicalis OX=8364 GN=rmnd5a PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.3e-50
Identity = 117/353 (33.14%), Postives = 197/353 (55.81%), Query Frame = 0


Query: 47  DPERPIDLNSVFSELKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRN 106
           D E    L+ V ++   ++KD   + +L S  K++ S++++  K ++K+F+ DIS     
Sbjct: 50  DGELSGTLSLVLTQCCKRIKD--TVQKLASDHKDIHSSVSRVGKAIDKNFDADISSV--G 109

Query: 107 ID-----FDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAM 166
           ID       +  +++++  HF+RQGM ++ +    EAG S   AS + PF E+++ILEA+
Sbjct: 110 IDGCWQNDSQQILSEVMVEHFFRQGMLDVAEELCQEAGLSID-ASQKEPFVELNRILEAL 169

Query: 167 KSRNLEPALNWALNNANKLKECGSDLLLKLHSMQFMEILQKG--DRHDALMYVRTYLAPL 226
           K R L PAL WA++N   L    S L  KLH + F+ +L  G  ++ +AL Y + +  P 
Sbjct: 170 KVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQREALQYAKNF-QPF 229

Query: 227 ASNHMAELQKLMACLLWTGR-LDCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQS 286
           A NH  ++Q LM  L++  + ++ SPY     LL    W  + +   R  C  LG S +S
Sbjct: 230 AENHQKDIQVLMGSLVYLRQGIENSPYVH---LLDANQWADICDIFTRDACALLGLSVES 289

Query: 287 PLGVTVAAGVQGLPPLLKFMNVMTGKK--QEWQSMKQLPVPVELDSEFQFHSIFVCPVSK 346
           PL V+ +AG   LP L+    V+  ++    W    +LP+ V+L  +  +HSIF CP+ +
Sbjct: 290 PLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILR 349

Query: 347 EQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           +Q+T+ NPPM ++CGH++ + ++ KM   S    KCPYCP +      ++++F
Sbjct: 350 QQTTDNNPPMKLVCGHIISRDALNKMFNGS--KLKCPYCPMEQSPGDAKQIFF 391

[Close]

BLAST of Sed0001884 vs. ExPASy Swiss-Prot
Match: Q6GLP4 (E3 ubiquitin-protein ligase RMND5A OS=Xenopus laevis OX=8355 GN=rmnd5a PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.9e-50
Identity = 117/353 (33.14%), Postives = 196/353 (55.52%), Query Frame = 0


Query: 47  DPERPIDLNSVFSELKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRN 106
           D E    L+ V ++   ++KD   + +L S  K++ S++++  K ++K+F+ DIS     
Sbjct: 50  DGELSGTLSLVLTQCCKRIKD--TVQKLASDHKDIHSSVSRVGKAIDKNFDADISSV--G 109

Query: 107 ID-----FDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAM 166
           ID       +  +++++  HF+RQGM ++ +    EA  S   AS + PF E+++ILEA+
Sbjct: 110 IDGCWQTDSQRILSEVMVEHFFRQGMLDVAEELCQEASLSID-ASQKEPFVELNRILEAL 169

Query: 167 KSRNLEPALNWALNNANKLKECGSDLLLKLHSMQFMEILQKG--DRHDALMYVRTYLAPL 226
           K R L PAL WA++N   L    S L  KLH + F+ +L  G  ++ +AL Y + +  P 
Sbjct: 170 KVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQQEALQYAKNF-QPF 229

Query: 227 ASNHMAELQKLMACLLWTGR-LDCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQS 286
           A NH  ++Q LM  L++  + ++ SPY     LL    W  + +   R  C  LG S +S
Sbjct: 230 AENHQKDIQVLMGSLVYLRQGIENSPYVH---LLDANQWADICDIFTRDACSLLGLSVES 289

Query: 287 PLGVTVAAGVQGLPPLLKFMNVMTGKKQE--WQSMKQLPVPVELDSEFQFHSIFVCPVSK 346
           PL V+ +AG   LP L+    V+  ++    W    +LP+ V+L  +  +HSIF CP+ +
Sbjct: 290 PLSVSFSAGCVALPALINIKAVIEQRQCSGVWNQKDELPIEVDLGKKCWYHSIFACPILR 349

Query: 347 EQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           +Q+TE NPPM ++CGH++ + ++ KM   S    KCPYCP +      ++++F
Sbjct: 350 QQTTENNPPMKLVCGHIISRDALNKMFNGS--KLKCPYCPMEQSPGDAKQIFF 391

[Close]

BLAST of Sed0001884 vs. ExPASy Swiss-Prot
Match: Q9H871 (E3 ubiquitin-protein transferase RMND5A OS=Homo sapiens OX=9606 GN=RMND5A PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.0e-49
Identity = 116/353 (32.86%), Postives = 196/353 (55.52%), Query Frame = 0


Query: 47  DPERPIDLNSVFSELKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRN 106
           D E    L+ V ++   ++KD   + +L S  K++ S++++  K ++K+F+ DIS     
Sbjct: 50  DAELSGTLSLVLTQCCKRIKD--TVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSV--G 109

Query: 107 ID-----FDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAM 166
           ID       +  +N+++  HF+RQGM ++ +    E+G S    S + PF E+++ILEA+
Sbjct: 110 IDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLSVD-PSQKEPFVELNRILEAL 169

Query: 167 KSRNLEPALNWALNNANKLKECGSDLLLKLHSMQFMEILQKG--DRHDALMYVRTYLAPL 226
           K R L PAL WA++N   L    S L  KLH + F+ +L  G  ++ +AL Y + +  P 
Sbjct: 170 KVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNF-QPF 229

Query: 227 ASNHMAELQKLMACLLWTGR-LDCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQS 286
           A NH  ++Q LM  L++  + ++ SPY     LL    W  + +   R  C  LG S +S
Sbjct: 230 ALNHQKDIQVLMGSLVYLRQGIENSPYVH---LLDANQWADICDIFTRDACALLGLSVES 289

Query: 287 PLGVTVAAGVQGLPPLLKFMNVMTGKK--QEWQSMKQLPVPVELDSEFQFHSIFVCPVSK 346
           PL V+ +AG   LP L+    V+  ++    W    +LP+ V+L  +  +HSIF CP+ +
Sbjct: 290 PLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILR 349

Query: 347 EQSTEENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           +Q+T+ NPPM ++CGH++ + ++ KM   S    KCPYCP +      ++++F
Sbjct: 350 QQTTDNNPPMKLVCGHIISRDALNKMFNGS--KLKCPYCPMEQSPGDAKQIFF 391

[Close]

BLAST of Sed0001884 vs. ExPASy TrEMBL
Match: A0A1S3B0U3 (protein RMD5 homolog A OS=Cucumis melo OX=3656 GN=LOC103484906 PE=4 SV=1)

HSP 1 Score: 726.5 bits (1874), Expect = 6.0e-206
Identity = 362/389 (93.06%), Postives = 377/389 (96.92%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKDAFDRVTKKQKL SSKS EVVD++HLELEQVL+KIQLAD+PE PIDLNSVF+E
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDRIHLELEQVLQKIQLADNPECPIDLNSVFAE 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQL+STQKEL +ALTKYPKLVEKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLDSTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFISEAGESESAAS+RSPFQEM QILE+MKSRNLEPALNWALNN+NKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDAL Y RTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYS SQ LLSV NWDKVAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSHSQ-LLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVELD EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. ExPASy TrEMBL
Match: A0A6J1HGI0 (protein RMD5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463351 PE=4 SV=1)

HSP 1 Score: 726.5 bits (1874), Expect = 6.0e-206
Identity = 362/389 (93.06%), Postives = 376/389 (96.66%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKDAFDRVTKKQKL SSKSHEVVDQ+HLELEQVL+KIQLAD+PE P+DL SVFSE
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQLADNPECPVDLKSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKEL +ALTKYPKLVEKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFISEAGESESAASMRSPFQEM QILEAMKSRNL+PALNWALNN+NKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
            ECGSDLLLKLHSMQFMEILQ GDRHDAL Y RTYLAPLASNH+AELQKLMACLLWTGRL
Sbjct: 181 NECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYSQSQ LLSVTNW+KVAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSQSQ-LLSVTNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVEL  EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. ExPASy TrEMBL
Match: A0A5D3CLJ0 (Protein RMD5-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003520 PE=4 SV=1)

HSP 1 Score: 726.5 bits (1874), Expect = 6.0e-206
Identity = 362/389 (93.06%), Postives = 377/389 (96.92%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKDAFDRVTKKQKL SSKS EVVD++HLELEQVL+KIQLAD+PE PIDLNSVF+E
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSQEVVDRIHLELEQVLQKIQLADNPECPIDLNSVFAE 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQL+STQKEL +ALTKYPKLVEKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLDSTQKELNAALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFISEAGESESAAS+RSPFQEM QILE+MKSRNLEPALNWALNN+NKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASLRSPFQEMYQILESMKSRNLEPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDAL Y RTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYS SQ LLSV NWDKVAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSHSQ-LLSVANWDKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVELD EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. ExPASy TrEMBL
Match: A0A6J1BU35 (protein RMD5 homolog A-like OS=Momordica charantia OX=3673 GN=LOC111005703 PE=4 SV=1)

HSP 1 Score: 724.9 bits (1870), Expect = 1.7e-205
Identity = 360/389 (92.54%), Postives = 376/389 (96.66%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKD FDRVTKKQKL SSKS EV+DQ+HLELEQVL+K+QLAD+PE PIDLNSVFSE
Sbjct: 1   MELDSIKDVFDRVTKKQKLSSSKSQEVIDQIHLELEQVLQKVQLADNPECPIDLNSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKEL  AL+KYPKL+EKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNVALSKYPKLIEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFI+EAGESESAASMRSPFQEM QILEAMKSRNLEPALNWALNN++KL
Sbjct: 121 HFYRQGMFELGDCFINEAGESESAASMRSPFQEMYQILEAMKSRNLEPALNWALNNSSKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
           KECGSDLLLKLHSMQFMEILQKGDRHDAL Y RTYLAPLASNHMAELQKLMACLLWTGRL
Sbjct: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALKYARTYLAPLASNHMAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYSQSQ LLS TNW+KVAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSQSQ-LLSATNWEKVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVELD EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELDREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. ExPASy TrEMBL
Match: A0A6J1KU15 (protein RMD5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111497206 PE=4 SV=1)

HSP 1 Score: 722.6 bits (1864), Expect = 8.6e-205
Identity = 360/389 (92.54%), Postives = 375/389 (96.40%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MELD+IKDAFDRVTKKQKL SSKSHEVVDQ+HLELEQVL+KIQLAD+PE P++L SVFSE
Sbjct: 1   MELDSIKDAFDRVTKKQKLSSSKSHEVVDQIHLELEQVLQKIQLADNPECPVNLKSVFSE 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LKTKLKDIAPLTQLESTQKEL +ALTKYPKLVEKSFNPDISKAYRN+DFDRHTVNQIIAS
Sbjct: 61  LKTKLKDIAPLTQLESTQKELNTALTKYPKLVEKSFNPDISKAYRNVDFDRHTVNQIIAS 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
           HFYRQGMFELGDCFISEAGESESAASMRSPFQEM QILEAMKSRNL+PALNWALNN+NKL
Sbjct: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMYQILEAMKSRNLDPALNWALNNSNKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTGRL 240
            ECGSDLLLKLHSMQFMEILQ GDRHDAL Y RTYLAPLASNH+AELQKLMACLLWTGRL
Sbjct: 181 NECGSDLLLKLHSMQFMEILQNGDRHDALKYARTYLAPLASNHLAELQKLMACLLWTGRL 240

Query: 241 DCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNV 300
           DCSPYSQSQ LLSVTNW+ VAEELIRQFC+FLGQSY+SPLGVTVAAGVQGLPPLLKFMNV
Sbjct: 241 DCSPYSQSQ-LLSVTNWENVAEELIRQFCNFLGQSYESPLGVTVAAGVQGLPPLLKFMNV 300

Query: 301 MTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360
           M GKKQEWQSMKQLPVPVEL  EFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM
Sbjct: 301 MAGKKQEWQSMKQLPVPVELGREFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIM 360

Query: 361 KMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           KMSKNSTKSFKCPYCPTDIDATRCR+LYF
Sbjct: 361 KMSKNSTKSFKCPYCPTDIDATRCRQLYF 388

[Close]

BLAST of Sed0001884 vs. TAIR 10
Match: AT4G37880.1 (LisH/CRA/RING-U-box domains-containing protein )

HSP 1 Score: 440.3 bits (1131), Expect = 1.6e-123
Identity = 223/393 (56.74%), Postives = 296/393 (75.32%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERP-IDLNSVFS 60
           MEL +IKDAFDRV  KQKL  SK++E+V  +  E+++ L  ++     +   +D  S+ +
Sbjct: 1   MELKSIKDAFDRVATKQKLSYSKTNEIVHMLSQEIDKALSILEETPSSDTMLLDHRSILA 60

Query: 61  ELKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYR-NIDFDRHTVNQII 120
           ++K    +IAP+TQLE+T+KEL +ALTKYPK++EK  NPDISKAYR N++FD H VNQII
Sbjct: 61  DVKKVFMEIAPITQLEATEKELHAALTKYPKVLEKQLNPDISKAYRHNVEFDTHIVNQII 120

Query: 121 ASHFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNAN 180
           A+ FYRQGMF++GDCF++E GESE   S R  F EM +ILEAMK R+LEPALNWA++N++
Sbjct: 121 ANFFYRQGMFDIGDCFVAETGESE--CSTRQSFVEMYRILEAMKRRDLEPALNWAVSNSD 180

Query: 181 KLKECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNHMAELQKLMACLLWTG 240
           KLKE  SDL +KLHS+ F+EI +  +  +A+ Y R ++A  A + + E+QKLM  LLW  
Sbjct: 181 KLKEARSDLEMKLHSLHFLEIARGKNSKEAIDYARKHIATFADSCLPEIQKLMCSLLWNR 240

Query: 241 RLDCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFM 300
           +LD SPYS+    LS   W+   +EL RQ+C+ LG+S +SPL +TV AG Q LP LLK+M
Sbjct: 241 KLDKSPYSE---FLSPALWNNAVKELTRQYCNLLGESSESPLSITVTAGTQALPVLLKYM 300

Query: 301 N-VMTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQ 360
           N VM  KK +WQ+M+QLPV  +L  EFQFHS+FVCPVSKEQS+++NPPM+M CGHVLCKQ
Sbjct: 301 NVVMANKKLDWQTMEQLPVDAQLSEEFQFHSVFVCPVSKEQSSDDNPPMMMSCGHVLCKQ 360

Query: 361 SIMKMSKNSTK-SFKCPYCPTDIDATRCRRLYF 390
           +I KMSKN +K SFKCPYCPTD+D +RCR+L+F
Sbjct: 361 TINKMSKNGSKSSFKCPYCPTDVDISRCRQLHF 388

[Close]

BLAST of Sed0001884 vs. TAIR 10
Match: AT2G22690.1 (zinc ion binding )

HSP 1 Score: 429.9 bits (1104), Expect = 2.2e-120
Identity = 217/391 (55.50%), Postives = 289/391 (73.91%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MEL N+KDAFDRVTKKQKL  SK+HEVVD++  E+++ L+ IQ  D+ E      SV ++
Sbjct: 1   MELKNVKDAFDRVTKKQKLCYSKTHEVVDKMSQEIDKALKTIQ-EDNHE------SVVAD 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LK   ++IAP+  LE++QKE+   LTKYPK ++K+ NPDIS AYRN+ FD HTV+QI+A 
Sbjct: 61  LKKTFEEIAPINLLEASQKEINGVLTKYPKALDKTLNPDISTAYRNVKFDTHTVHQILAQ 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
            FYRQGM+++GDCFISE GE +  +S+   F EM+ ILEAMK R+L PAL W  +N++KL
Sbjct: 121 FFYRQGMYDVGDCFISETGEVKPESSVTKAFMEMNMILEAMKERDLGPALKWVASNSDKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNH--MAELQKLMACLLWTG 240
           KE  SDL LKLHS+ F+EI +     +A+ Y R + A  +++     E+QKLM  LLW  
Sbjct: 181 KEAKSDLELKLHSLHFLEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLMCSLLWIR 240

Query: 241 RLDCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFM 300
            L+ SPYS+    LS   W   A+EL RQ+C  LG+S +SPL VTVAAG Q LP  LK++
Sbjct: 241 NLNKSPYSE---FLSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGSQVLPTFLKYL 300

Query: 301 NVMTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQS 360
           NV+  K++EWQ+M+QL VPVEL  E++F+S+FVCPVSKE S+E+NPPM + CGHVLCKQS
Sbjct: 301 NVLPEKRKEWQTMEQLLVPVELSEEYRFYSVFVCPVSKEHSSEDNPPMRLACGHVLCKQS 360

Query: 361 IMKMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           I +MS+N ++SFKCPYCPTDIDA++C++LYF
Sbjct: 361 INRMSRNGSRSFKCPYCPTDIDASQCKQLYF 381

[Close]

BLAST of Sed0001884 vs. TAIR 10
Match: AT2G22690.2 (zinc ion binding )

HSP 1 Score: 429.9 bits (1104), Expect = 2.2e-120
Identity = 217/391 (55.50%), Postives = 289/391 (73.91%), Query Frame = 0


Query: 1   MELDNIKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSE 60
           MEL N+KDAFDRVTKKQKL  SK+HEVVD++  E+++ L+ IQ  D+ E      SV ++
Sbjct: 1   MELKNVKDAFDRVTKKQKLCYSKTHEVVDKMSQEIDKALKTIQ-EDNHE------SVVAD 60

Query: 61  LKTKLKDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIAS 120
           LK   ++IAP+  LE++QKE+   LTKYPK ++K+ NPDIS AYRN+ FD HTV+QI+A 
Sbjct: 61  LKKTFEEIAPINLLEASQKEINGVLTKYPKALDKTLNPDISTAYRNVKFDTHTVHQILAQ 120

Query: 121 HFYRQGMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKL 180
            FYRQGM+++GDCFISE GE +  +S+   F EM+ ILEAMK R+L PAL W  +N++KL
Sbjct: 121 FFYRQGMYDVGDCFISETGEVKPESSVTKAFMEMNMILEAMKERDLGPALKWVASNSDKL 180

Query: 181 KECGSDLLLKLHSMQFMEILQKGDRHDALMYVRTYLAPLASNH--MAELQKLMACLLWTG 240
           KE  SDL LKLHS+ F+EI +     +A+ Y R + A  +++     E+QKLM  LLW  
Sbjct: 181 KEAKSDLELKLHSLHFLEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLMCSLLWIR 240

Query: 241 RLDCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFM 300
            L+ SPYS+    LS   W   A+EL RQ+C  LG+S +SPL VTVAAG Q LP  LK++
Sbjct: 241 NLNKSPYSE---FLSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGSQVLPTFLKYL 300

Query: 301 NVMTGKKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQS 360
           NV+  K++EWQ+M+QL VPVEL  E++F+S+FVCPVSKE S+E+NPPM + CGHVLCKQS
Sbjct: 301 NVLPEKRKEWQTMEQLLVPVELSEEYRFYSVFVCPVSKEHSSEDNPPMRLACGHVLCKQS 360

Query: 361 IMKMSKNSTKSFKCPYCPTDIDATRCRRLYF 390
           I +MS+N ++SFKCPYCPTDIDA++C++LYF
Sbjct: 361 INRMSRNGSRSFKCPYCPTDIDASQCKQLYF 381

[Close]

BLAST of Sed0001884 vs. TAIR 10
Match: AT5G09630.1 (LisH/CRA/RING-U-box domains-containing protein )

HSP 1 Score: 359.8 bits (922), Expect = 2.8e-99
Identity = 185/387 (47.80%), Postives = 270/387 (69.77%), Query Frame = 0


Query: 6   IKDAFDRVTKKQKLFSSKSHEVVDQVHLELEQVLRKIQLADDPERPIDLNSVFSELKTKL 65
           ++DAFDRV+KKQKL+ S + +V+D V   ++  L +IQL +D    ++  SV +EL+ KL
Sbjct: 9   VRDAFDRVSKKQKLYHSVTQDVIDLVCDGIQDTLTRIQLGNDD--GVEPESVLTELRRKL 68

Query: 66  KDIAPLTQLESTQKELISALTKYPKLVEKSFNPDISKAYRNIDFDRHTVNQIIASHFYRQ 125
             + P+ QL+ + KE   +L+K  KL+E S++PDIS A  ++DFD + VN+I+  H YR+
Sbjct: 69  DALLPIIQLQKSHKETKWSLSKLVKLLEVSYHPDISLACFSVDFDINLVNKILIHHCYRE 128

Query: 126 GMFELGDCFISEAGESESAASMRSPFQEMDQILEAMKSRNLEPALNWALNNANKLKECGS 185
           G+F++GDC + EAG  E    +RS F E  QI++++K RN+EPA+ W   N  KLK+  S
Sbjct: 129 GLFDVGDCLVKEAGREEE-TEVRSQFLEFHQIVDSLKLRNIEPAMRWIFANRGKLKQKSS 188

Query: 186 DLLLKLHSMQFMEILQKGDRHDALMYVRTYLA--PLASNHMAELQKLMACLLWTGRLDCS 245
            L  KL S+++ +IL++G   DAL Y RT+    PL   H  E+QKL+ CLLW G  + S
Sbjct: 189 KLEFKLLSLKYCDILREGKSDDALEYARTHFTQYPL---HFKEIQKLITCLLWIGNFEKS 248

Query: 246 PYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGVTVAAGVQGLPPLLKFMNVMTG 305
           PY++   ++S + WDKV +ELI ++ H L Q   SPL V ++AG + LP LLK +++M  
Sbjct: 249 PYAE---IVSPSCWDKVTKELIMEYHHLLDQPINSPLKVALSAGYESLPSLLKLVHLMAL 308

Query: 306 KKQEWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTEENPPMLMLCGHVLCKQSIMKMS 365
            KQEWQ+MKQLPVP+EL +E++FHS FVCPVS++QS+EENPPM + CGHV+ KQS+M++S
Sbjct: 309 TKQEWQAMKQLPVPLELGNEYKFHSAFVCPVSRDQSSEENPPMQLPCGHVISKQSMMRLS 368

Query: 366 KN-STKSFKCPYCPTDIDATRCRRLYF 390
           KN + ++FKCPYCP +  A+ CR+LYF
Sbjct: 369 KNCAFRTFKCPYCPAETLASACRQLYF 386

[Close]

BLAST of Sed0001884 vs. TAIR 10
Match: AT3G55070.1 (LisH/CRA/RING-U-box domains-containing protein )

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-22
Identity = 66/272 (24.26%), Postives = 132/272 (48.53%), Query Frame = 0


Query: 108 DFDRHTVNQIIASHFYRQGMFELGDCFISEAGESESAASM--RSPFQEMDQILEAMKSRN 167
           +++   + +I+  +  R   FE      ++  ES +   +     F+E  ++++A+K+R 
Sbjct: 139 EWNNTKLKRILVDYMLRMSYFETA----TKLSESSNIMDLVDIDIFREAKKVIDALKNRE 198

Query: 168 LEPALNWALNNANKLKECGSDLLLKLHSMQFMEILQKGDRHD---ALMYVRTYLAPLASN 227
           +  AL W  +N  +LK+  S    +L   +F+E+++         A+ Y R +LA   + 
Sbjct: 199 VASALTWCADNKTRLKKSKSKFEFQLRLQEFIELVRVDTAESYKKAIQYARKHLASWGTT 258

Query: 228 HMAELQKLMACLLWTGRLDCSPYSQSQLLLSVTNWDKVAEELIRQFCHFLGQSYQSPLGV 287
           HM ELQ ++A L +    +CS Y   ++L  +  WD + ++  ++FC   G + +  L +
Sbjct: 259 HMKELQHVLATLAFKSTTECSKY---KVLFELRQWDVLVDQFKQEFCKLYGMTMEPLLNI 318

Query: 288 TVAAGVQGLPPLLKFMNVMTGKKQ-EWQSMKQLPVPVELDSEFQFHSIFVCPVSKEQSTE 347
            + AG+  L          T +     ++ ++L +P+      Q HS  VC +SKE    
Sbjct: 319 YLQAGLSALKTPYGLEEGCTKEDPLSQENFRKLALPLPFSK--QHHSKLVCYISKELMDT 378

Query: 348 ENPPMLMLCGHVLCKQSIMKMSKNSTKSFKCP 374
           ENPP ++  G+V   +++ +M++ +     CP
Sbjct: 379 ENPPQVLPNGYVYSTKALKEMAEKNGGKITCP 401

The following BLAST results are available for this feature:

BLAST of Sed0001884 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963019.1	1.2e-205	93.06	protein RMD5 homolog [Cucurbita moschata] >XP_022963020.1 protein RMD5 homolog [...	[more]
XP_008440495.1	1.2e-205	93.06	PREDICTED: protein RMD5 homolog A [Cucumis melo] >XP_008440496.1 PREDICTED: prot...	[more]
XP_022132999.1	3.6e-205	92.54	protein RMD5 homolog A-like [Momordica charantia] >XP_022133000.1 protein RMD5 h...	[more]
XP_004143429.1	6.1e-205	92.80	protein RMD5 homolog [Cucumis sativus] >XP_031743696.1 protein RMD5 homolog [Cuc...	[more]
XP_023003688.1	1.8e-204	92.54	protein RMD5 homolog [Cucurbita maxima] >XP_023003689.1 protein RMD5 homolog [Cu...	[more]

BLAST of Sed0001884 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T075	2.3e-122	56.74	Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1	[more]
O59668	3.7e-51	33.33	LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe (strain 97...	[more]
Q640V2	5.3e-50	33.14	E3 ubiquitin-protein ligase RMND5A OS=Xenopus tropicalis OX=8364 GN=rmnd5a PE=2 ...	[more]
Q6GLP4	6.9e-50	33.14	E3 ubiquitin-protein ligase RMND5A OS=Xenopus laevis OX=8355 GN=rmnd5a PE=1 SV=1	[more]
Q9H871	2.0e-49	32.86	E3 ubiquitin-protein transferase RMND5A OS=Homo sapiens OX=9606 GN=RMND5A PE=1 S...	[more]

BLAST of Sed0001884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B0U3	6.0e-206	93.06	protein RMD5 homolog A OS=Cucumis melo OX=3656 GN=LOC103484906 PE=4 SV=1	[more]
A0A6J1HGI0	6.0e-206	93.06	protein RMD5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463351 PE=4 SV=1	[more]
A0A5D3CLJ0	6.0e-206	93.06	Protein RMD5-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1BU35	1.7e-205	92.54	protein RMD5 homolog A-like OS=Momordica charantia OX=3673 GN=LOC111005703 PE=4 ...	[more]
A0A6J1KU15	8.6e-205	92.54	protein RMD5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111497206 PE=4 SV=1	[more]

BLAST of Sed0001884 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37880.1	1.6e-123	56.74	LisH/CRA/RING-U-box domains-containing protein	[more]
AT2G22690.1	2.2e-120	55.50	zinc ion binding	[more]
AT2G22690.2	2.2e-120	55.50	zinc ion binding	[more]
AT5G09630.1	2.8e-99	47.80	LisH/CRA/RING-U-box domains-containing protein	[more]
AT3G55070.1	1.3e-22	24.26	LisH/CRA/RING-U-box domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 332..375 e-value: 8.0E-4 score: 28.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 332..375 score: 8.683004
IPR013144	CRA domain	SMART	SM00757	toby_final6	coord: 203..300 e-value: 6.9E-14 score: 62.1
IPR006594	LIS1 homology motif	SMART	SM00667	Lish	coord: 110..142 e-value: 0.0025 score: 27.1
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 110..142 score: 9.32115
IPR006595	CTLH, C-terminal LisH motif	SMART	SM00668	ctlh	coord: 150..207 e-value: 2.7E-8 score: 43.5
IPR006595	CTLH, C-terminal LisH motif	PROSITE	PS50897	CTLH	coord: 150..207 score: 11.275339
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 332..373 e-value: 2.0E-9 score: 37.3
IPR024964	CTLH/CRA C-terminal to LisH motif domain	PFAM	PF10607	CLTH	coord: 151..292 e-value: 3.3E-29 score: 101.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 321..388 e-value: 6.5E-9 score: 36.9
None	No IPR available	PANTHER	PTHR12170:SF11	PROTEIN RMD5 HOMOLOG	coord: 1..389
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 326..387
IPR045098	Fyv10 family	PANTHER	PTHR12170	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	coord: 1..389
IPR044063	Gid-type RING finger domain	PROSITE	PS51867	ZF_RING_GID	coord: 332..375 score: 13.15673
IPR037683	Rmd5, degenerated RING (dRING) finger	CDD	cd16652	dRing_Rmd5p_like	coord: 330..376 e-value: 6.74888E-29 score: 104.643

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001884.3	Sed0001884.3	mRNA
Sed0001884.1	Sed0001884.1	mRNA
Sed0001884.2	Sed0001884.2	mRNA
Sed0001884.4	Sed0001884.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0034657	GID complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity