Sed0001876 (gene) Chayote v1

Overview


Name	Sed0001876
Type	gene
Organism	Sechium edule (Chayote v1)
Description	AAI domain-containing protein
Location	LG09: 38406943 .. 38407363 (+)
RNA-Seq Expression	Sed0001876
Synteny	Sed0001876

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAATCCAGCTTCAAACCCCTGCAATTCCTGGTGTTCATGATGGCAATTACAAGCTTTCTTGAGTCAGGTAAAGCCAATTTCTGTTCAAACAGCTTGATTTATTCACTTGTTCAGCTGATTCCTTGCAGTCCATCACTGTCCACATCCCATCCCATCCCACCAAGCGCTGACTGTTGCAATGCCCTCAAAGCTCTCAGCCAGCCTTGTCTCTGTAACGTGTTGAATGCTCCTCCGGTTTCGGGTATCGATTACAGCTCGGCTATGGCGCTGCATCAGAAATGCGCTACGAATTTCAAACCATGTAACTTTGATTTTGCTTGCTTCTCCTAACATTTTCTGTTTTTTTTTTCTTTTTTTTGATGACTCTTGAGAAACTGTGTTTTGTTTTTGGGTTGTTTCTAATGCAGGCTTTTAG

mRNA sequence

ATGAATCAATCCAGCTTCAAACCCCTGCAATTCCTGGTGTTCATGATGGCAATTACAAGCTTTCTTGAGTCAGGTAAAGCCAATTTCTGTTCAAACAGCTTGATTTATTCACTTGTTCAGCTGATTCCTTGCAGTCCATCACTGTCCACATCCCATCCCATCCCACCAAGCGCTGACTGTTGCAATGCCCTCAAAGCTCTCAGCCAGCCTTGTCTCTGTAACGTGTTGAATGCTCCTCCGGTTTCGGGTATCGATTACAGCTCGGCTATGGCGCTGCATCAGAAATGCGCTACGAATTTCAAACCATGCTTTTAG

Coding sequence (CDS)

ATGAATCAATCCAGCTTCAAACCCCTGCAATTCCTGGTGTTCATGATGGCAATTACAAGCTTTCTTGAGTCAGGTAAAGCCAATTTCTGTTCAAACAGCTTGATTTATTCACTTGTTCAGCTGATTCCTTGCAGTCCATCACTGTCCACATCCCATCCCATCCCACCAAGCGCTGACTGTTGCAATGCCCTCAAAGCTCTCAGCCAGCCTTGTCTCTGTAACGTGTTGAATGCTCCTCCGGTTTCGGGTATCGATTACAGCTCGGCTATGGCGCTGCATCAGAAATGCGCTACGAATTTCAAACCATGCTTTTAG

Protein sequence

MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADCCNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPCF

Homology

[Close]

BLAST of Sed0001876 vs. NCBI nr
Match: XP_038900004.1 (non-specific lipid-transfer protein P5-like [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 5.5e-36
Identity = 77/104 (74.04%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M Q++FKPLQFLVFMMAI  FLE GKA FCSNSLI SLVQLIPC P+LS  HPIPPS  C
Sbjct: 1   MKQANFKPLQFLVFMMAIACFLEQGKAKFCSNSLISSLVQLIPCRPALSPFHPIPPSILC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPCF 105
           CNA+K L Q CLC +L+APPVSG+DY+ AM+L QKCATNF PCF
Sbjct: 61  CNAIKTLGQSCLCALLDAPPVSGVDYNLAMSLPQKCATNFDPCF 104

[Close]

BLAST of Sed0001876 vs. NCBI nr
Match: KGN45155.1 (hypothetical protein Csa_016316 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 6.1e-35
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M Q+ FKPL+FLVFM+AITSFL   KA FCSNSLIYSLVQLIPC PSLS  HPIPPS  C
Sbjct: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPCF 105
           C+A+K L Q C+C +L+APPVSG+DY+ AM+L QKCA NF+PCF
Sbjct: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF 104

[Close]

BLAST of Sed0001876 vs. NCBI nr
Match: XP_008461263.1 (PREDICTED: protein LIM1-like [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M Q+ FKPL+FLVF++AI SFL  GKA FCSNSLIYSLVQL+PC PSLS  HPIPPS  C
Sbjct: 1   MKQAIFKPLEFLVFILAIASFLGQGKAKFCSNSLIYSLVQLLPCRPSLSPFHPIPPSPLC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPCF 105
           CNA++ L Q C+C +L+APPVSG+DY+ AM+L QKCA+NF+PCF
Sbjct: 61  CNAIETLGQSCICALLDAPPVSGVDYNLAMSLPQKCASNFEPCF 104

[Close]

BLAST of Sed0001876 vs. NCBI nr
Match: XP_023514059.1 (putative lipid-transfer protein DIR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-33
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M   SFKPLQFLVFM+A+T F+E  KA FCSNSLI +LVQLIPC PSLS   P+PPS  C
Sbjct: 1   MKPGSFKPLQFLVFMIAMTCFVEQSKAKFCSNSLISTLVQLIPCKPSLSPFSPMPPSLLC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPCF 105
           C+ALK L QPCLC VL+APPVSGIDY+ AM L QKCA NF PCF
Sbjct: 61  CHALKTLGQPCLCAVLDAPPVSGIDYNVAMLLPQKCALNFHPCF 104

[Close]

BLAST of Sed0001876 vs. NCBI nr
Match: XP_023004704.1 (putative lipid-transfer protein DIR1 [Cucurbita maxima] >KAG6593320.1 hypothetical protein SDJN03_12796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-33
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M   SFKPLQFLVFM+A+T F+E  KA FCSNSLI +LVQLIPC PSLS   P+PPS  C
Sbjct: 1   MKPGSFKPLQFLVFMIAMTCFVEPSKAKFCSNSLISTLVQLIPCKPSLSPFSPMPPSLLC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPCF 105
           C+ALK L QPCLC VL+APPVSGIDY+ AM L QKCA NF PCF
Sbjct: 61  CHALKTLGQPCLCAVLDAPPVSGIDYNVAMLLPQKCALNFHPCF 104

[Close]

BLAST of Sed0001876 vs. ExPASy TrEMBL
Match: A0A0A0K635 (AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428920 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.0e-35
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M Q+ FKPL+FLVFM+AITSFL   KA FCSNSLIYSLVQLIPC PSLS  HPIPPS  C
Sbjct: 1   MKQAIFKPLEFLVFMLAITSFLGQAKAKFCSNSLIYSLVQLIPCRPSLSPFHPIPPSLVC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPCF 105
           C+A+K L Q C+C +L+APPVSG+DY+ AM+L QKCA NF+PCF
Sbjct: 61  CDAIKTLGQSCICALLDAPPVSGVDYNLAMSLPQKCAANFEPCF 104

[Close]

BLAST of Sed0001876 vs. ExPASy TrEMBL
Match: A0A1S3CEQ8 (protein LIM1-like OS=Cucumis melo OX=3656 GN=LOC103499902 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.6e-35
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M Q+ FKPL+FLVF++AI SFL  GKA FCSNSLIYSLVQL+PC PSLS  HPIPPS  C
Sbjct: 1   MKQAIFKPLEFLVFILAIASFLGQGKAKFCSNSLIYSLVQLLPCRPSLSPFHPIPPSPLC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPCF 105
           CNA++ L Q C+C +L+APPVSG+DY+ AM+L QKCA+NF+PCF
Sbjct: 61  CNAIETLGQSCICALLDAPPVSGVDYNLAMSLPQKCASNFEPCF 104

[Close]

BLAST of Sed0001876 vs. ExPASy TrEMBL
Match: A0A6J1KX32 (putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111497920 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.8e-33
Identity = 74/104 (71.15%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M   SFKPLQFLVFM+A+T F+E  KA FCSNSLI +LVQLIPC PSLS   P+PPS  C
Sbjct: 1   MKPGSFKPLQFLVFMIAMTCFVEPSKAKFCSNSLISTLVQLIPCKPSLSPFSPMPPSLLC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPCF 105
           C+ALK L QPCLC VL+APPVSGIDY+ AM L QKCA NF PCF
Sbjct: 61  CHALKTLGQPCLCAVLDAPPVSGIDYNVAMLLPQKCALNFHPCF 104

[Close]

BLAST of Sed0001876 vs. ExPASy TrEMBL
Match: A0A067H6Y1 (AAI domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039389mg PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.4e-23
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M  S  K L  L+ ++ +TSF+E G ++ C+N+ I +LVQLIPC P++S   PIPPS  C
Sbjct: 1   MKLSGTKALPILLLVLVMTSFMEQGNSHPCANTFISTLVQLIPCRPAVSPFSPIPPSEAC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPC 104
           CNA+KAL QPCLC ++N PP++GID + A+ L  KC  NF+PC
Sbjct: 61  CNAIKALGQPCLCVLINGPPIAGIDRNVALQLPDKCIANFEPC 103

[Close]

BLAST of Sed0001876 vs. ExPASy TrEMBL
Match: V4SWN4 (AAI domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10033078mg PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.4e-23
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 1   MNQSSFKPLQFLVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADC 60
           M  S  K L  L+ ++ +TSF+E G ++ C+N+ I +LVQLIPC P++S   PIPPS  C
Sbjct: 1   MKLSGTKALPILLLVLVMTSFMEQGNSHPCANTFISTLVQLIPCRPAVSPFSPIPPSEAC 60

Query: 61  CNALKALSQPCLCNVLNAPPVSGIDYSSAMALHQKCATNFKPC 104
           CNA+KAL QPCLC ++N PP++GID + A+ L  KC  NF+PC
Sbjct: 61  CNAIKALGQPCLCVLINGPPIAGIDRNVALQLPDKCIANFEPC 103

[Close]

BLAST of Sed0001876 vs. TAIR 10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 3.6e-17
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 30  CSNSLIYSLVQLIPCSPSLSTSHPIPPSADCCNALKALSQPCLCNVLNAPPVSGIDYSSA 89
           CS +   +LVQLIPC  +++   PIPP+  CC+A+  L +PCLC + N PP+SGID S A
Sbjct: 48  CSRTFFSALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGPPLSGIDRSMA 107

Query: 90  MALHQKCATNFKPC 104
           + L Q+C+ NF PC
Sbjct: 108 LQLPQRCSANFPPC 121

[Close]

BLAST of Sed0001876 vs. TAIR 10
Match: AT3G07450.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 12  LVFMMAITSFLESGKANFCSNSLIYSLVQLIPCSPSLSTSHPIPPSADCCNALKALSQPC 71
           L+ +M  +  +     + C  + + +L+QL+PC PS++    +PP+  CC A+K L QPC
Sbjct: 14  LLMVMVQSGLVRETLGHPCGRTFLSALIQLVPCRPSVAPFSTLPPNGLCCAAIKTLGQPC 73

Query: 72  LCNVLNAPPVSGIDYSSAMALHQKCATNFKPC 104
           LC +   PP+ G+D + A+ L  KC+ NF PC
Sbjct: 74  LCVLAKGPPIVGVDRTLALHLPGKCSANFLPC 105

The following BLAST results are available for this feature:

BLAST of Sed0001876 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900004.1	5.5e-36	74.04	non-specific lipid-transfer protein P5-like [Benincasa hispida]	[more]
KGN45155.1	6.1e-35	71.15	hypothetical protein Csa_016316 [Cucumis sativus]	[more]
XP_008461263.1	1.8e-34	69.23	PREDICTED: protein LIM1-like [Cucumis melo]	[more]
XP_023514059.1	4.4e-33	71.15	putative lipid-transfer protein DIR1 [Cucurbita pepo subsp. pepo]	[more]
XP_023004704.1	5.7e-33	71.15	putative lipid-transfer protein DIR1 [Cucurbita maxima] >KAG6593320.1 hypothetic...	[more]

BLAST of Sed0001876 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K635	3.0e-35	71.15	AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428920 PE=4 SV...	[more]
A0A1S3CEQ8	8.6e-35	69.23	protein LIM1-like OS=Cucumis melo OX=3656 GN=LOC103499902 PE=4 SV=1	[more]
A0A6J1KX32	2.8e-33	71.15	putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111497920...	[more]
A0A067H6Y1	4.4e-23	51.46	AAI domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039389mg PE=...	[more]
V4SWN4	4.4e-23	51.46	AAI domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10033078mg...	[more]

BLAST of Sed0001876 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52130.1	3.6e-17	50.00	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G07450.1	1.5e-15	36.96	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 29..102 e-value: 4.9E-9 score: 36.2
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 28..103 e-value: 5.9E-12 score: 47.3
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 37..103
IPR039265	Putative lipid-transfer protein DIR1-like	PANTHER	PTHR33122	LIPID BINDING PROTEIN-RELATED	coord: 1..103
None	No IPR available	PANTHER	PTHR33122:SF33	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001876.1	Sed0001876.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009627	systemic acquired resistance
molecular_function	GO:0005504	fatty acid binding