Sed0001874 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCAAACGTCGGATGTTAGATTGAAGCTTCTGATAGACAAAAAATCACAAAGAGTTCTTTACGGTGAAGCAGATAAGAAGTTCATTGATTTTCTTTTCAATCTACTGTCCCTTCCACTTGGTGCTGTAATTAAGCTGTTGAAAAAGGATGGCATGGTGGGGTGCTTGGGAAATCTCTACGAGAGTGTAGAAACCTTGAACGAGGCATATTTGTTGCAGCCAAGTCAAAGCAAAGATGCACTCCTAAAACCCGAAATCTTGCCTGATGTTGGTGTCCCAGTTGCAGCTAAACCTGCTCGATTGTATACATGCAGTAACAATATGTCTTTTGATAATACCTGCCGAGGTTATGTTTCGTATATCTATAATGAAACTTGTCCGGGTTGCGATGAGTACATGCAAGAAGAATTTACGATTGTGCCGAAGAGTCCAAGTGCAGGAAATCGACCGGTGACCGGAGGAGTGGGGTTTGTGAAGGACTTGGCGACTTATATTGTGATGGATGACCTGACTGTGAAACACATTTCTGACTTCTCCATGACAACTCTTTTCAGAAAGTTTAATGTCCAGGATGTGGATTCTTTGGAGGAGAAATATATCACTTTGGATGTTGATGAGGTAATATATACATATCCACAAGCTTTCAATTGGTTGGTCGTGGCGTGGTGGTTGAAGACTTGTGGTTTGAAGGTGTGCTCCCTTCAAGGTTTCAGGTTTGAAACTCACATGTGACATTAATTCCTTCAATGTCTTCTGGAGGCTGGTCTAGCGACAAGTGTGGTCACTAATTACGTTACCAGCTTGGGTATAGTGGAGTGAAGCTCTGATTTCTGATTCTCGATTTCCAAAAAAATAGTTTGTTTGAGGTTAATGCGAAAGAATTTGAGTCATTTGAGTTTTTATGGTTTAGGGTGAGTTATGATTTGAGCTCAGTTTTTTATTTAGTCTTTATGGTTTAGTCAAATTTCATAAATTCTTCCGGCCAATATCATATTAACCTAGTGGTCAAGAAGGCATTGCATAATTAAGAAGTGATGCGCTCATGGTTGCCACCTTAAGAATTAATTTTATACAAATTTCTTTTACATCTAAATGTTGTAGGATTGAGTGATATCTACTATGACAACAAAGATACGCTCAAGCAGATAGTCACCGTATACCTATCTATATAGAGAGAGGGAGAGAGAGACAATTTTTCATGAATAGGTAAATTTGAGTAATTGTATCAGTTGACTTACTCTATTAGATCTTAGTACGAGGTAAAAAAGAGGAAAACTTGCCTACTCATAGACAAGTAGGTAGTCCATGCTTGATGCATATGTGGAATTAGATTAACCACACAATTTTTCTTTTTATATAAAAAATAATTTATTATTACAAATTATGTGGCTCACATTATGCTACATATGCATTAAGCATGAACTACTTACTTGTCCATGAGTAGCGACCAAATGAAAACTAACGTCAAACTGACGACTATGTTAAATTTGGAACTATAGGGATGAATTGAAATCTTGTTTTAAACTACAGGACAGCTTTACAACTTGTTATTAGACGATATAGAGTCTCATCTCAATAAGAGAATTAACTTATATATTTTTTATAAAAGTACTTTTTCACGTGAGACCTTCAAAATGTTCCTTAAAAAAAGTGCATCTTTAGATTATTACTTGTTTAGATTTAATGGGTTATGTTACTATTAGAAACAGTTTGGTTCCATCTCAATAGAGGTTATGATGTTGTCTTCTCCACTGTTTCAACGTGGGATCCTCGACACTGTTATTTAATTATCTTTATGAAACTTTGTTACAACTTGCAACTTTGGAAGCAAAAATTGATGAAAAAGTTGGTATTTTGTAGGGTGTGGAAATACTAGAGGCTTCATTGCAATCGAAGACAGTTCTGACGCATGCTTTGCTTAAAAGACGCAGATCACACATTGACAATGAGGTAATTAAGTTGTCTCATACTGTTCTTAAGCATACTATCTAATTGTTTAGGGTTTGTTTTTTTTATTGTATGTTTGGTTTTGAATTCATTATTCAAATAAACTTTTCTGTATTGGTATGATGTAAATTAGTCATTTGTTGAATTTGTTCTATGATCAATTAGGTCAAGTTGGTGTCTTTCGATGAGAATTGGGAG ATGGAGCAAACGTCGGATGTTAGATTGAAGCTTCTGATAGACAAAAAATCACAAAGAGTTCTTTACGGTGAAGCAGATAAGAAGTTCATTGATTTTCTTTTCAATCTACTGTCCCTTCCACTTGGTGCTGTAATTAAGCTGTTGAAAAAGGATGGCATGGTGGGGTGCTTGGGAAATCTCTACGAGAGTGTAGAAACCTTGAACGAGGCATATTTGTTGCAGCCAAGTCAAAGCAAAGATGCACTCCTAAAACCCGAAATCTTGCCTGATGTTGGTGTCCCAGTTGCAGCTAAACCTGCTCGATTGTATACATGCAGTAACAATATGTCTTTTGATAATACCTGCCGAGGTTATGTTTCGTATATCTATAATGAAACTTGTCCGGGTTGCGATGAGTACATGCAAGAAGAATTTACGATTGTGCCGAAGAGTCCAAGTGCAGGAAATCGACCGGTGACCGGAGGAGTGGGGTTTGTGAAGGACTTGGCGACTTATATTGTGATGGATGACCTGACTGTGAAACACATTTCTGACTTCTCCATGACAACTCTTTTCAGAAAGTTTAATGTCCAGGATGTGGATTCTTTGGAGGAGAAATATATCACTTTGGATGTTGATGAGGGTGTGGAAATACTAGAGGCTTCATTGCAATCGAAGACAGTTCTGACGCATGCTTTGCTTAAAAGACGCAGATCACACATTGACAATGAGGTAATTAAGTTGTCTCATACTGTTCTTAAGCATACTATCTAATTGTTTAGGGTTTGTTTTTTTTATTGTATGTTTGGTTTTGAATTCATTATTCAAATAAACTTTTCTGTATTGGTATGATGTAAATTAGTCATTTGTTGAATTTGTTCTATGATCAATTAGGTCAAGTTGGTGTCTTTCGATGAGAATTGGGAG ATGGAGCAAACGTCGGATGTTAGATTGAAGCTTCTGATAGACAAAAAATCACAAAGAGTTCTTTACGGTGAAGCAGATAAGAAGTTCATTGATTTTCTTTTCAATCTACTGTCCCTTCCACTTGGTGCTGTAATTAAGCTGTTGAAAAAGGATGGCATGGTGGGGTGCTTGGGAAATCTCTACGAGAGTGTAGAAACCTTGAACGAGGCATATTTGTTGCAGCCAAGTCAAAGCAAAGATGCACTCCTAAAACCCGAAATCTTGCCTGATGTTGGTGTCCCAGTTGCAGCTAAACCTGCTCGATTGTATACATGCAGTAACAATATGTCTTTTGATAATACCTGCCGAGGTTATGTTTCGTATATCTATAATGAAACTTGTCCGGGTTGCGATGAGTACATGCAAGAAGAATTTACGATTGTGCCGAAGAGTCCAAGTGCAGGAAATCGACCGGTGACCGGAGGAGTGGGGTTTGTGAAGGACTTGGCGACTTATATTGTGATGGATGACCTGACTGTGAAACACATTTCTGACTTCTCCATGACAACTCTTTTCAGAAAGTTTAATGTCCAGGATGTGGATTCTTTGGAGGAGAAATATATCACTTTGGATGTTGATGAGGGTGTGGAAATACTAGAGGCTTCATTGCAATCGAAGACAGTTCTGACGCATGCTTTGCTTAAAAGACGCAGATCACACATTGACAATGAGGTAATTAAGTTGTCTCATACTGTTCTTAAGCATACTATCTAA MEQTSDVRLKLLIDKKSQRVLYGEADKKFIDFLFNLLSLPLGAVIKLLKKDGMVGCLGNLYESVETLNEAYLLQPSQSKDALLKPEILPDVGVPVAAKPARLYTCSNNMSFDNTCRGYVSYIYNETCPGCDEYMQEEFTIVPKSPSAGNRPVTGGVGFVKDLATYIVMDDLTVKHISDFSMTTLFRKFNVQDVDSLEEKYITLDVDEGVEILEASLQSKTVLTHALLKRRRSHIDNEVIKLSHTVLKHTI Homology
BLAST of Sed0001874 vs. NCBI nr
Match: XP_008465479.1 (PREDICTED: uncharacterized protein LOC103503094 [Cucumis melo] >KAA0062236.1 putative DNA polymerase zeta catalytic subunit [Cucumis melo var. makuwa]) HSP 1 Score: 306.2 bits (783), Expect = 2.6e-79 Identity = 171/253 (67.59%), Postives = 202/253 (79.84%), Query Frame = 0
BLAST of Sed0001874 vs. NCBI nr
Match: XP_031741245.1 (uncharacterized protein LOC105435653 [Cucumis sativus] >KAE8647978.1 hypothetical protein Csa_000490 [Cucumis sativus]) HSP 1 Score: 295.8 bits (756), Expect = 3.5e-76 Identity = 168/251 (66.93%), Postives = 195/251 (77.69%), Query Frame = 0
BLAST of Sed0001874 vs. NCBI nr
Match: XP_022138964.1 (uncharacterized protein LOC111010013 [Momordica charantia]) HSP 1 Score: 222.2 bits (565), Expect = 4.9e-54 Identity = 132/241 (54.77%), Postives = 162/241 (67.22%), Query Frame = 0
BLAST of Sed0001874 vs. NCBI nr
Match: XP_038891339.1 (uncharacterized protein LOC120080784 [Benincasa hispida] >XP_038891341.1 uncharacterized protein LOC120080784 [Benincasa hispida]) HSP 1 Score: 215.3 bits (547), Expect = 5.9e-52 Identity = 134/277 (48.38%), Postives = 170/277 (61.37%), Query Frame = 0
BLAST of Sed0001874 vs. NCBI nr
Match: XP_008461735.1 (PREDICTED: uncharacterized protein LOC103500268 [Cucumis melo] >KAA0052182.1 DUF674 domain-containing protein [Cucumis melo var. makuwa] >TYJ97778.1 DUF674 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 206.1 bits (523), Expect = 3.6e-49 Identity = 121/235 (51.49%), Postives = 153/235 (65.11%), Query Frame = 0
BLAST of Sed0001874 vs. ExPASy TrEMBL
Match: A0A5A7V731 (Putative DNA polymerase zeta catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00410 PE=4 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79 Identity = 171/253 (67.59%), Postives = 202/253 (79.84%), Query Frame = 0
BLAST of Sed0001874 vs. ExPASy TrEMBL
Match: A0A1S3CPD6 (uncharacterized protein LOC103503094 OS=Cucumis melo OX=3656 GN=LOC103503094 PE=4 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79 Identity = 171/253 (67.59%), Postives = 202/253 (79.84%), Query Frame = 0
BLAST of Sed0001874 vs. ExPASy TrEMBL
Match: A0A6J1CBJ8 (uncharacterized protein LOC111010013 OS=Momordica charantia OX=3673 GN=LOC111010013 PE=4 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 2.4e-54 Identity = 132/241 (54.77%), Postives = 162/241 (67.22%), Query Frame = 0
BLAST of Sed0001874 vs. ExPASy TrEMBL
Match: A0A5A7U8V2 (DUF674 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3341G00030 PE=4 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49 Identity = 121/235 (51.49%), Postives = 153/235 (65.11%), Query Frame = 0
BLAST of Sed0001874 vs. ExPASy TrEMBL
Match: A0A1S3CGQ2 (uncharacterized protein LOC103500268 OS=Cucumis melo OX=3656 GN=LOC103500268 PE=4 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49 Identity = 121/235 (51.49%), Postives = 153/235 (65.11%), Query Frame = 0
BLAST of Sed0001874 vs. TAIR 10
Match: AT5G43240.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 83.2 bits (204), Expect = 3.3e-16 Identity = 67/248 (27.02%), Postives = 121/248 (48.79%), Query Frame = 0
BLAST of Sed0001874 vs. TAIR 10
Match: AT5G43240.3 (Protein of unknown function (DUF674) ) HSP 1 Score: 83.2 bits (204), Expect = 3.3e-16 Identity = 67/248 (27.02%), Postives = 121/248 (48.79%), Query Frame = 0
BLAST of Sed0001874 vs. TAIR 10
Match: AT3G09140.2 (Protein of unknown function (DUF674) ) HSP 1 Score: 79.0 bits (193), Expect = 6.2e-15 Identity = 68/252 (26.98%), Postives = 113/252 (44.84%), Query Frame = 0
BLAST of Sed0001874 vs. TAIR 10
Match: AT5G01120.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 76.6 bits (187), Expect = 3.1e-14 Identity = 65/250 (26.00%), Postives = 114/250 (45.60%), Query Frame = 0
BLAST of Sed0001874 vs. TAIR 10
Match: AT5G01130.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 76.3 bits (186), Expect = 4.0e-14 Identity = 67/241 (27.80%), Postives = 106/241 (43.98%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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