Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTACTACTTCAATCTGCCAAAGAAATGTACAGTAGAAAGAAAAGATTTTTCGCTGGATGTAGACCACCGCTCAAGGAACAAATTCCTTGTTTTATCAGAAAGGGGTGCACAAAAATCCTTTTCTATGTTCTTGATACCTAGCTCCATCGACTGGATTCGCACCACCTTGCAACAGCTCATCGATTGGCCAGCTAACAATCGATTTTTCAAAAAAACCAGAACGGACGATTATTCCCTATGGATCGAGAAAACTTCAAATAGAAGAGGGCGTATTGCTGAAATATACATGCTCGGCAACAAAGGGGGGAAAGTGGTTTTAATGGTCCCGGAAGGGTACGACTACAAAGGATGGAAAGACTTCGTTGCTATGATTACAGATCAAGTCGTTACAGCTGATATTCCAAAAGGTGCCACAATGAATGCAAAACGAAAGAAAAAAAGAGGTTTGACCGAGGAAGAATGGAAAAAGCTTAATAGCCAGCAAAATCAATCTTATGCTAATGTGGTTACCAACCAGGGACACACATTAATTAGAGTTGGGGACAAAAGTGACCCAAACGAAATGAATGCCACAGAAAGCTTTGATAGCGAAGGTTTAAGAACTCCAGAAATTTCTTTCGACTGGAACAAAACCATTGTCATAACCAGGCGATTTTTCCACGACGACTGACCCAAAATCAGAGAAACACTTTGAAATTCTAGTGACGAAGTTATGGCCATTAATCCTTTCCAAGGCGACAAGGCTTTACTCGCTCTCAGAACCACTGATTATGCCAGATTGTTATGTTACAACAAAGGATGGGTGACTATTGATTCCTTTCATTTGATGTTCGAAAAATGGGATCCGCTTCTCCATGCCGTTCCTACTATGCTTCCAAGTTATGGAGGTTGGCTGAGATTTCGGGGGATTCCTTTGCATTTGTGGAACCACAAAACTATTGGTAACATTTGCAGTGGTCTAATGGAAGTGGGAAATTCAACATCTTTAAAAATGGATCTTATAGAAGCACATTTAAAAGTCTCTGGAAACTATAGAGGTTTTGTCCCTATTAATATTGGCATAAAAGATGACGAAGGAGGAGAATATGTTATTCAAACGGTTGCTCCAGCTTCCGGCAGGTGGATTATTGGTCGGAATCAGAAAGTTCATGGAACTTTCACCCGCGAAGCTGCTGCAAGTTTCGATATTCACAATCCTAGTTCTAAACATTATTACATCAAAAGACATATAACATACCCTTTTCCCTATAGAACTTTCGGCACAACCCCTTCGATGGCAAAGTCACGCCAAAATGAGCAGCCAATTTCACGGAAGAGTACAAAAAGGGATTGACAGATTGTCAGCAAAGGAAAAGGGAAAATGAGTAGTTTCGAGTATAGAGAGGTGGGCCAGAGAAAATTGGTCTCTTTTACCTCTCAAGATAAATCCATGGTCTTTAGCCCAAATGGGCCTCCGGGCAACATTGGTAAAAAAATTAAACACCATTTCAGAGCCGAATGGGCCGTTCGATACTGGGCCATCTATTATCCACTAAAGAACGAATGTCCAATCCCTGATTCAGAACTTGCAGAGGAAAACTCAACAAAACCATCTGGTTTTTCCAATGACGGTGTCACAGTCTCTGACCGACAAGAATCCCTTCAACACAAGACTACCCCAACTGGCCATCCTAGCGACGAGTTACAAGTTTTGGGCAGTGTTGGTGCCAAGAGCACTTCAAATGCTCTATCTCCAGGTACGCTTCAATACACCCCTCTTTCCATTGGAACTATGCAGGCTATATCTGATGAGCATGAACTGGTTGTGGATTTCGGTGAACTTACCCCGATCGATTGGAACCACAATATTGAGATATTGGTTTCTAGCCCGGACCGATCTTCCCCCTCAACTCCCAACAGTCAATCTGGTATCCGTGAAATACAGGAGGAAATTATTGAAAACAGTTTGAGAGGATTACATAACACTAATGAAGAAGAGAACCAAGGGGATCAACAACATGGAAGAGGTTTAGAAATCAACTGGAAGAATGGTTGA
mRNA sequence
ATGTCTTACTACTTCAATCTGCCAAAGAAATGTACAGTAGAAAGAAAAGATTTTTCGCTGGATGTAGACCACCGCTCAAGGAACAAATTCCTTGTTTTATCAGAAAGGGGTGCACAAAAATCCTTTTCTATGTTCTTGATACCTAGCTCCATCGACTGGATTCGCACCACCTTGCAACAGCTCATCGATTGGCCAGCTAACAATCGATTTTTCAAAAAAACCAGAACGGACGATTATTCCCTATGGATCGAGAAAACTTCAAATAGAAGAGGGCGTATTGCTGAAATATACATGCTCGGCAACAAAGGGGGGAAAGTGGTTTTAATGGTCCCGGAAGGGTACGACTACAAAGGATGGAAAGACTTCGTTGCTATGATTACAGATCAAGTCGTTACAGCTGATATTCCAAAAGGTGCCACAATGAATGCAAAACGAAAGAAAAAAAGAGGTTTGACCGAGGAAGAATGGAAAAAGCTTAATAGCCAGCAAAATCAATCTTATGCTAATGTGGTTACCAACCAGGGACACACATTAATTAGAGTTGGGGACAAAAGTGACCCAAACGAAATGAATGCCACAGAAAGCTTTGATAGCGAAGGCGACAAGGCTTTACTCGCTCTCAGAACCACTGATTATGCCAGATTGTTATGTTACAACAAAGGATGGGTGACTATTGATTCCTTTCATTTGATGTTCGAAAAATGGGATCCGCTTCTCCATGCCGTTCCTACTATGCTTCCAAGTTATGGAGGTTGGCTGAGATTTCGGGGGATTCCTTTGCATTTGTGGAACCACAAAACTATTGGTAACATTTGCAGTGGTCTAATGGAAGTGGGAAATTCAACATCTTTAAAAATGGATCTTATAGAAGCACATTTAAAAGTCTCTGGAAACTATAGAGGTTTTGTCCCTATTAATATTGGCATAAAAGATGACGAAGGAGGAGAATATGTTATTCAAACGGTTGCTCCAGCTTCCGGCAGGTGGATTATTGGTCGGAATCAGAAAGTTCATGGAACTTTCACCCGCGAAGCTGCTGCAAGTTTCGATATTCACAATCCTAGTTCTAAACATTATTACATCAAAAGACATATAACATACCCTTTTCCCTATAGAACTTTCGGCACAACCCCTTCGATGGCAAAGTCACGCCAAAATGAGCAGCCAATTTCACGGAAGAATAAATCCATGGTCTTTAGCCCAAATGGGCCTCCGGGCAACATTGGTAAAAAAATTAAACACCATTTCAGAGCCGAATGGGCCGTTCGATACTGGGCCATCTATTATCCACTAAAGAACGAATGTCCAATCCCTGATTCAGAACTTGCAGAGGAAAACTCAACAAAACCATCTGGTTTTTCCAATGACGGTGTCACAGTCTCTGACCGACAAGAATCCCTTCAACACAAGACTACCCCAACTGGCCATCCTAGCGACGAGTTACAAGTTTTGGGCAGTGTTGGTGCCAAGAGCACTTCAAATGCTCTATCTCCAGGTACGCTTCAATACACCCCTCTTTCCATTGGAACTATGCAGGCTATATCTGATGAGCATGAACTGGTTGTGGATTTCGGTGAACTTACCCCGATCGATTGGAACCACAATATTGAGATATTGGTTTCTAGCCCGGACCGATCTTCCCCCTCAACTCCCAACAGTCAATCTGGTATCCGTGAAATACAGGAGGAAATTATTGAAAACAGTTTGAGAGGATTACATAACACTAATGAAGAAGAGAACCAAGGGGATCAACAACATGGAAGAGGTTTAGAAATCAACTGGAAGAATGGTTGA
Coding sequence (CDS)
ATGTCTTACTACTTCAATCTGCCAAAGAAATGTACAGTAGAAAGAAAAGATTTTTCGCTGGATGTAGACCACCGCTCAAGGAACAAATTCCTTGTTTTATCAGAAAGGGGTGCACAAAAATCCTTTTCTATGTTCTTGATACCTAGCTCCATCGACTGGATTCGCACCACCTTGCAACAGCTCATCGATTGGCCAGCTAACAATCGATTTTTCAAAAAAACCAGAACGGACGATTATTCCCTATGGATCGAGAAAACTTCAAATAGAAGAGGGCGTATTGCTGAAATATACATGCTCGGCAACAAAGGGGGGAAAGTGGTTTTAATGGTCCCGGAAGGGTACGACTACAAAGGATGGAAAGACTTCGTTGCTATGATTACAGATCAAGTCGTTACAGCTGATATTCCAAAAGGTGCCACAATGAATGCAAAACGAAAGAAAAAAAGAGGTTTGACCGAGGAAGAATGGAAAAAGCTTAATAGCCAGCAAAATCAATCTTATGCTAATGTGGTTACCAACCAGGGACACACATTAATTAGAGTTGGGGACAAAAGTGACCCAAACGAAATGAATGCCACAGAAAGCTTTGATAGCGAAGGCGACAAGGCTTTACTCGCTCTCAGAACCACTGATTATGCCAGATTGTTATGTTACAACAAAGGATGGGTGACTATTGATTCCTTTCATTTGATGTTCGAAAAATGGGATCCGCTTCTCCATGCCGTTCCTACTATGCTTCCAAGTTATGGAGGTTGGCTGAGATTTCGGGGGATTCCTTTGCATTTGTGGAACCACAAAACTATTGGTAACATTTGCAGTGGTCTAATGGAAGTGGGAAATTCAACATCTTTAAAAATGGATCTTATAGAAGCACATTTAAAAGTCTCTGGAAACTATAGAGGTTTTGTCCCTATTAATATTGGCATAAAAGATGACGAAGGAGGAGAATATGTTATTCAAACGGTTGCTCCAGCTTCCGGCAGGTGGATTATTGGTCGGAATCAGAAAGTTCATGGAACTTTCACCCGCGAAGCTGCTGCAAGTTTCGATATTCACAATCCTAGTTCTAAACATTATTACATCAAAAGACATATAACATACCCTTTTCCCTATAGAACTTTCGGCACAACCCCTTCGATGGCAAAGTCACGCCAAAATGAGCAGCCAATTTCACGGAAGAATAAATCCATGGTCTTTAGCCCAAATGGGCCTCCGGGCAACATTGGTAAAAAAATTAAACACCATTTCAGAGCCGAATGGGCCGTTCGATACTGGGCCATCTATTATCCACTAAAGAACGAATGTCCAATCCCTGATTCAGAACTTGCAGAGGAAAACTCAACAAAACCATCTGGTTTTTCCAATGACGGTGTCACAGTCTCTGACCGACAAGAATCCCTTCAACACAAGACTACCCCAACTGGCCATCCTAGCGACGAGTTACAAGTTTTGGGCAGTGTTGGTGCCAAGAGCACTTCAAATGCTCTATCTCCAGGTACGCTTCAATACACCCCTCTTTCCATTGGAACTATGCAGGCTATATCTGATGAGCATGAACTGGTTGTGGATTTCGGTGAACTTACCCCGATCGATTGGAACCACAATATTGAGATATTGGTTTCTAGCCCGGACCGATCTTCCCCCTCAACTCCCAACAGTCAATCTGGTATCCGTGAAATACAGGAGGAAATTATTGAAAACAGTTTGAGAGGATTACATAACACTAATGAAGAAGAGAACCAAGGGGATCAACAACATGGAAGAGGTTTAGAAATCAACTGGAAGAATGGTTGA
Protein sequence
MSYYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQLIDWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWKDFVAMITDQVVTADIPKGATMNAKRKKKRGLTEEEWKKLNSQQNQSYANVVTNQGHTLIRVGDKSDPNEMNATESFDSEGDKALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFRGIPLHLWNHKTIGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDEGGEYVIQTVAPASGRWIIGRNQKVHGTFTREAAASFDIHNPSSKHYYIKRHITYPFPYRTFGTTPSMAKSRQNEQPISRKNKSMVFSPNGPPGNIGKKIKHHFRAEWAVRYWAIYYPLKNECPIPDSELAEENSTKPSGFSNDGVTVSDRQESLQHKTTPTGHPSDELQVLGSVGAKSTSNALSPGTLQYTPLSIGTMQAISDEHELVVDFGELTPIDWNHNIEILVSSPDRSSPSTPNSQSGIREIQEEIIENSLRGLHNTNEEENQGDQQHGRGLEINWKNG
Homology
BLAST of Sed0001869 vs. NCBI nr
Match:
KAA0034016.1 (hypothetical protein E6C27_scaffold400G00850 [Cucumis melo var. makuwa])
HSP 1 Score: 272.3 bits (695), Expect = 9.8e-69
Identity = 160/450 (35.56%), Postives = 237/450 (52.67%), Query Frame = 0
Query: 1 MSYYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQ 60
M+Y+ +LP+ C +ERK+F L +D +++ L+E G K+FS+ + P +DWIR TL+
Sbjct: 1 MAYFKSLPRSCKIERKEFVLLLDKYAKHTHYWLTETGVHKAFSIEVSPRDLDWIRGTLKS 60
Query: 61 LIDWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWK 120
LI+ P++NRFF + R ++ +WI KT N +G IAEI+ + +K K ++V EG + GW
Sbjct: 61 LIETPSSNRFFLENRDSEHCIWIRKTRNGKGCIAEIFRVDHKNRKSCILVSEGPEKSGWV 120
Query: 121 DFVAMITDQV-------------VTADIPKGATMNAKRKKKRGLTEEEWKKLNSQQNQSY 180
F++MIT +V + DI ++ ++ E ++S + SY
Sbjct: 121 SFLSMITPKVEVKAKIRPTFLPRSSPDILFSPPIDYHKRSYAKAVTEGRSSISSDSSNSY 180
Query: 181 ANVVTNQGHTLIRVG----DKSDPNEMNAT------------------------ESFD-- 240
A+ ++ H+ G D P + T ESF
Sbjct: 181 AS--SDSSHSSHSSGNSPRDSPSPVLLENTVVLVRRFFHDDWQKILQNLRKQTEESFTYN 240
Query: 241 -SEGDKALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFR 300
+KAL+ + A LLC NKGW T+ + + FEKW P HA P ++PSYGGW FR
Sbjct: 241 AFHAEKALVHFNSNVPANLLCQNKGWTTVGKYMVRFEKWAPASHASPKLIPSYGGWTTFR 300
Query: 301 GIPLHLWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDE 360
GIPLHLWN KT IG C GL++V T +LIEA LK+ NY GF+P + I D E
Sbjct: 301 GIPLHLWNMKTFQQIGKACGGLLKVAEETKTARNLIEAKLKIRYNYSGFLPAYVKIFDQE 360
Query: 361 GGEYVIQTVAPASGRWIIGRNQKVHGTFTREAAASFDIHNPSSKHYYIK--RHITYPFPY 402
G ++V+Q + + G+W++ RN ++HGTF R+AAASFD NP S+ + I+ P
Sbjct: 361 GNKFVVQVITHSEGKWLMERNVRLHGTFKRQAAASFDEFNPDSEQFLFDGLEAISPDLP- 420
BLAST of Sed0001869 vs. NCBI nr
Match:
TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 271.9 bits (694), Expect = 1.3e-68
Identity = 144/407 (35.38%), Postives = 226/407 (55.53%), Query Frame = 0
Query: 1 MSYYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQ 60
MS LP+ CT+E+KDF L VD++SR+ L+++E G KSFS+ + S++W++++ +
Sbjct: 91 MSTLRQLPRSCTIEKKDFVLSVDNQSRDLKLLITEVGPYKSFSIAVTLESLEWLKSSFRT 150
Query: 61 LIDWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWK 120
L+D P RFF + R +DY LW++KT NR+G IAEIY + ++G K ++VPEG + GW
Sbjct: 151 LLDTPRTTRFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGSEKSGWA 210
Query: 121 DFVAMITDQVVTADIPKGATMNAKRKKKRGLTEEEWKKLNSQQNQSYANVV--------- 180
FV+++ + ++ T+ + K R + E + + +SYA V
Sbjct: 211 QFVSLLYGKKDSSTKTNYRTLLNTKLKDRFSSSESG---DDTKRRSYAEAVIKGSSSDEE 270
Query: 181 TNQGHTLIRVGDKSDPN---EMNAT--------------------ESFDS-------EGD 240
TN T I+ KS+ N E T E D+ D
Sbjct: 271 TNSWTTNIKKTGKSNTNFSFEWERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHAD 330
Query: 241 KALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFRGIPLH 300
KAL+ + + A L+C NKGW T+ F++ FE+W+ HA P ++PSYGGW++ RG+PLH
Sbjct: 331 KALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLH 390
Query: 301 LWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDEGGEYV 360
WN ++ IG+ C G +EV T D+IEA +++ NY GF+P I + D E ++
Sbjct: 391 AWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSGFIPAFIKLFDKEEHSFI 450
Query: 361 IQTVAPASGRWIIGRNQKVHGTFTREAAASFDIHNPSSKHYYIKRHI 366
IQ + G+W + R+ +HGTFTREAA FD N +S+ Y+ + ++
Sbjct: 451 IQVIVKTEGKWHLERSPSIHGTFTREAAKRFDEFNLNSEQYFFEDNL 494
BLAST of Sed0001869 vs. NCBI nr
Match:
TYK23598.1 (hypothetical protein E5676_scaffold500G001100 [Cucumis melo var. makuwa])
HSP 1 Score: 271.2 bits (692), Expect = 2.2e-68
Identity = 179/514 (34.82%), Postives = 258/514 (50.19%), Query Frame = 0
Query: 1 MSYYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQ 60
M+Y+ +LP+ C VERK+F L +D S++ L+E GA K+FS+ + P +DWI+ TL+
Sbjct: 1 MAYFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPKDLDWIKCTLKS 60
Query: 61 LIDWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWK 120
LI P NRFF +TR + +WI KT N +G AEI+ + K K ++VPEG + GW
Sbjct: 61 LIATPNTNRFFLETRDSEQCIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPEKSGWV 120
Query: 121 DFVAMITDQV----------VTADIPKGATMNA----KRKKKRGLTEEEWKKLNSQQNQS 180
F++MIT +V + P G KR R +TE + S + S
Sbjct: 121 SFLSMITPKVEVKAKTRPTFLPRSSPDGRLSPPIDYHKRSYARAVTE---GRATSDSSDS 180
Query: 181 YANVVTNQGH-----------------TLIRVGDKSDPNEM------NATESFD---SEG 240
Y + ++ ++R D +++ ESF
Sbjct: 181 YDSSDSSHSSGNSFCDSPSSDLLENTVVIVRRFFHDDWHKILQNLRKQTEESFTYNAFHA 240
Query: 241 DKALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFRGIPL 300
+KAL+ + A LLC NKGW T+ + + FEKW HA P ++PSYGGW FRGIPL
Sbjct: 241 EKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSYGGWTTFRGIPL 300
Query: 301 HLWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDEGGEY 360
HLWN T IG C GL++V T +LIEA +KV NY GF+P N+ I D+EG ++
Sbjct: 301 HLWNMTTFQQIGKACGGLIKVAEETKSAKNLIEARIKVRYNYSGFLPANVRIFDNEGNKF 360
Query: 361 VIQTVAPASGRWIIGRNQKVHGTFTREAAASFDIHNPSSKHYYIK--RHITYPFPYRTFG 420
IQ V G+W+I RN ++HGTF R+AAA+FD NP S+ ++ + I+ F
Sbjct: 361 SIQVVTHPEGKWLIERNVRLHGTFKRQAAATFDDFNPESEQFFFEGMEAISPDF----LS 420
Query: 421 TTPSMAKSRQNEQPISRKNKSMVFSPNGPPGNIGKKIKHHFRAEWAVRYWAIYYPLKNEC 466
T+ KS +QP + KS++ P+ RA + + NE
Sbjct: 421 TSSDDRKSSTPDQPSAL--KSVIIKPD--------------RAATSPSF-------LNEE 480
BLAST of Sed0001869 vs. NCBI nr
Match:
TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 270.8 bits (691), Expect = 2.8e-68
Identity = 176/516 (34.11%), Postives = 249/516 (48.26%), Query Frame = 0
Query: 3 YYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQLI 62
++ +LP+ C VERK+F L +D S++ L+E GA K+FS+ + P +DWIR TL+ LI
Sbjct: 57 HFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPRDLDWIRCTLKSLI 116
Query: 63 DWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWKDF 122
P NRFF +TR + +WI KT N +G AEI+ + K K ++VPEG D GW F
Sbjct: 117 ATPNTNRFFLETRDSEQRIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPDKSGWVSF 176
Query: 123 VAMITDQVVTADIPKGATMNAKRKKKRGLTEEEWKKLNSQQNQSYANVVTNQGHTLIRVG 182
++MIT +V + + R ++ K +SYA VT +G
Sbjct: 177 LSMITPKVEVKAKTRPTFLPRTSPDCRLSPPIDYHK------RSYAKAVT-EGRPFATSD 236
Query: 183 -----DKSDPNEMNATESFDS--------------------------------------- 242
D SD + ++ DS
Sbjct: 237 SSDSYDSSDSSHSSSNSFCDSPSSDLLENTVVIVRRFFHDDWHKILQNLRKQTEESFTYN 296
Query: 243 --EGDKALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFR 302
+KAL+ + A LLC NKGW T+ + + FEKW P+ HA P ++PSYGGW FR
Sbjct: 297 AFHAEKALVHFSSNIPANLLCQNKGWSTVGKYSVRFEKWSPVYHATPKLIPSYGGWTTFR 356
Query: 303 GIPLHLWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDE 362
GIPLHLWN T IG C GL++V T +LIEA +KV NY GF+P N+ I D+E
Sbjct: 357 GIPLHLWNMMTFQQIGKACEGLIKVAEETRSAKNLIEARIKVRYNYSGFLPANVRIFDNE 416
Query: 363 GGEYVIQTVAPASGRWIIGRNQKVHGTFTREAAASFDIHNPSSKHYYIKRHITYPFPYRT 422
G ++ +Q V G+W+I RN ++HGTF R+AAASFD NP S+ ++ + +
Sbjct: 417 GNKFFVQVVTHPEGKWLIERNVRLHGTFKRQAAASFDDFNPESEQFFFEGSEAISPDF-- 476
Query: 423 FGTTPSMAKSRQNEQPISRKNKSMVFSPNGPPGNIGKKIKHHFRAEWAVRYWAIYYPLKN 466
T+ KS +QP + KS++ P+ A N
Sbjct: 477 LSTSSDGRKSSTPDQPSAL--KSVIIKPDRN---------------------ATLPSFLN 536
BLAST of Sed0001869 vs. NCBI nr
Match:
KAA0039309.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 268.5 bits (685), Expect = 1.4e-67
Identity = 148/401 (36.91%), Postives = 224/401 (55.86%), Query Frame = 0
Query: 1 MSYYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQ 60
M+Y+ +LP+ C +ERK+F L +D +++ L+E GA K+FS+ + P +DWIR+TL+
Sbjct: 1 MAYFKSLPRSCKIERKEFVLLLDKYAKHTHYWLTETGAHKAFSIEVSPRDLDWIRSTLKS 60
Query: 61 LIDWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWK 120
LI+ P++NRFF + R ++ +WI KT N +G AEI+ + +K K ++VPEG + W
Sbjct: 61 LIETPSSNRFFLENRDYEHCIWIRKTRNGKGCTAEIFRVDHKNRKSCILVPEGLEKSCWV 120
Query: 121 DFVAMITDQV-VTAD-----IPKGA-------TMNAKRKKKRGLTEEEWKKLNSQQNQSY 180
F++MIT +V V A +P+ + ++ ++ E ++S + SY
Sbjct: 121 SFLSMITPKVEVKAKTRPIFLPRSSPEFRLSPPIDYHKRSYAKAVSEGRSSISSDSSDSY 180
Query: 181 ANVVTNQGH-----------------TLIRVGDKSDPNEM------NATESFD---SEGD 240
A+ ++Q L+R D ++ ESF +
Sbjct: 181 ASSDSSQSSGNSPCDSPFPVLLENTVVLVRRFFHDDWQKILQNLRKQTEESFTYNAFHAE 240
Query: 241 KALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFRGIPLH 300
K L+ + A LLC NKGW T+ + + FEKW P HA P ++PSYGGW FRGIPLH
Sbjct: 241 KVLVHFNSNVPANLLCQNKGWTTVGKYTVRFEKWAPASHASPKLIPSYGGWTTFRGIPLH 300
Query: 301 LWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDEGGEYV 360
LWN T IG C GL++V T +LIEA LK+ NY GF+P + I D EG ++V
Sbjct: 301 LWNMMTFQQIGKACGGLIKVAEETKTARNLIEAKLKIRYNYSGFLPAYVKIFDQEGNKFV 360
BLAST of Sed0001869 vs. ExPASy TrEMBL
Match:
A0A5A7SVM5 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00850 PE=4 SV=1)
HSP 1 Score: 272.3 bits (695), Expect = 4.7e-69
Identity = 160/450 (35.56%), Postives = 237/450 (52.67%), Query Frame = 0
Query: 1 MSYYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQ 60
M+Y+ +LP+ C +ERK+F L +D +++ L+E G K+FS+ + P +DWIR TL+
Sbjct: 1 MAYFKSLPRSCKIERKEFVLLLDKYAKHTHYWLTETGVHKAFSIEVSPRDLDWIRGTLKS 60
Query: 61 LIDWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWK 120
LI+ P++NRFF + R ++ +WI KT N +G IAEI+ + +K K ++V EG + GW
Sbjct: 61 LIETPSSNRFFLENRDSEHCIWIRKTRNGKGCIAEIFRVDHKNRKSCILVSEGPEKSGWV 120
Query: 121 DFVAMITDQV-------------VTADIPKGATMNAKRKKKRGLTEEEWKKLNSQQNQSY 180
F++MIT +V + DI ++ ++ E ++S + SY
Sbjct: 121 SFLSMITPKVEVKAKIRPTFLPRSSPDILFSPPIDYHKRSYAKAVTEGRSSISSDSSNSY 180
Query: 181 ANVVTNQGHTLIRVG----DKSDPNEMNAT------------------------ESFD-- 240
A+ ++ H+ G D P + T ESF
Sbjct: 181 AS--SDSSHSSHSSGNSPRDSPSPVLLENTVVLVRRFFHDDWQKILQNLRKQTEESFTYN 240
Query: 241 -SEGDKALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFR 300
+KAL+ + A LLC NKGW T+ + + FEKW P HA P ++PSYGGW FR
Sbjct: 241 AFHAEKALVHFNSNVPANLLCQNKGWTTVGKYMVRFEKWAPASHASPKLIPSYGGWTTFR 300
Query: 301 GIPLHLWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDE 360
GIPLHLWN KT IG C GL++V T +LIEA LK+ NY GF+P + I D E
Sbjct: 301 GIPLHLWNMKTFQQIGKACGGLLKVAEETKTARNLIEAKLKIRYNYSGFLPAYVKIFDQE 360
Query: 361 GGEYVIQTVAPASGRWIIGRNQKVHGTFTREAAASFDIHNPSSKHYYIK--RHITYPFPY 402
G ++V+Q + + G+W++ RN ++HGTF R+AAASFD NP S+ + I+ P
Sbjct: 361 GNKFVVQVITHSEGKWLMERNVRLHGTFKRQAAASFDEFNPDSEQFLFDGLEAISPDLP- 420
BLAST of Sed0001869 vs. ExPASy TrEMBL
Match:
A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)
HSP 1 Score: 271.9 bits (694), Expect = 6.2e-69
Identity = 144/407 (35.38%), Postives = 226/407 (55.53%), Query Frame = 0
Query: 1 MSYYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQ 60
MS LP+ CT+E+KDF L VD++SR+ L+++E G KSFS+ + S++W++++ +
Sbjct: 91 MSTLRQLPRSCTIEKKDFVLSVDNQSRDLKLLITEVGPYKSFSIAVTLESLEWLKSSFRT 150
Query: 61 LIDWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWK 120
L+D P RFF + R +DY LW++KT NR+G IAEIY + ++G K ++VPEG + GW
Sbjct: 151 LLDTPRTTRFFLEKRFEDYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILVPEGSEKSGWA 210
Query: 121 DFVAMITDQVVTADIPKGATMNAKRKKKRGLTEEEWKKLNSQQNQSYANVV--------- 180
FV+++ + ++ T+ + K R + E + + +SYA V
Sbjct: 211 QFVSLLYGKKDSSTKTNYRTLLNTKLKDRFSSSESG---DDTKRRSYAEAVIKGSSSDEE 270
Query: 181 TNQGHTLIRVGDKSDPN---EMNAT--------------------ESFDS-------EGD 240
TN T I+ KS+ N E T E D+ D
Sbjct: 271 TNSWTTNIKKTGKSNTNFSFEWERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHAD 330
Query: 241 KALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFRGIPLH 300
KAL+ + + A L+C NKGW T+ F++ FE+W+ HA P ++PSYGGW++ RG+PLH
Sbjct: 331 KALICFKNEEQANLICKNKGWTTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLH 390
Query: 301 LWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDEGGEYV 360
WN ++ IG+ C G +EV T D+IEA +++ NY GF+P I + D E ++
Sbjct: 391 AWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYSGFIPAFIKLFDKEEHSFI 450
Query: 361 IQTVAPASGRWIIGRNQKVHGTFTREAAASFDIHNPSSKHYYIKRHI 366
IQ + G+W + R+ +HGTFTREAA FD N +S+ Y+ + ++
Sbjct: 451 IQVIVKTEGKWHLERSPSIHGTFTREAAKRFDEFNLNSEQYFFEDNL 494
BLAST of Sed0001869 vs. ExPASy TrEMBL
Match:
A0A5D3DJE1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001100 PE=4 SV=1)
HSP 1 Score: 271.2 bits (692), Expect = 1.1e-68
Identity = 179/514 (34.82%), Postives = 258/514 (50.19%), Query Frame = 0
Query: 1 MSYYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQ 60
M+Y+ +LP+ C VERK+F L +D S++ L+E GA K+FS+ + P +DWI+ TL+
Sbjct: 1 MAYFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPKDLDWIKCTLKS 60
Query: 61 LIDWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWK 120
LI P NRFF +TR + +WI KT N +G AEI+ + K K ++VPEG + GW
Sbjct: 61 LIATPNTNRFFLETRDSEQCIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPEKSGWV 120
Query: 121 DFVAMITDQV----------VTADIPKGATMNA----KRKKKRGLTEEEWKKLNSQQNQS 180
F++MIT +V + P G KR R +TE + S + S
Sbjct: 121 SFLSMITPKVEVKAKTRPTFLPRSSPDGRLSPPIDYHKRSYARAVTE---GRATSDSSDS 180
Query: 181 YANVVTNQGH-----------------TLIRVGDKSDPNEM------NATESFD---SEG 240
Y + ++ ++R D +++ ESF
Sbjct: 181 YDSSDSSHSSGNSFCDSPSSDLLENTVVIVRRFFHDDWHKILQNLRKQTEESFTYNAFHA 240
Query: 241 DKALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFRGIPL 300
+KAL+ + A LLC NKGW T+ + + FEKW HA P ++PSYGGW FRGIPL
Sbjct: 241 EKALVHFSSNIPANLLCQNKGWTTVGKYSVRFEKWSSAYHATPKLIPSYGGWTTFRGIPL 300
Query: 301 HLWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDEGGEY 360
HLWN T IG C GL++V T +LIEA +KV NY GF+P N+ I D+EG ++
Sbjct: 301 HLWNMTTFQQIGKACGGLIKVAEETKSAKNLIEARIKVRYNYSGFLPANVRIFDNEGNKF 360
Query: 361 VIQTVAPASGRWIIGRNQKVHGTFTREAAASFDIHNPSSKHYYIK--RHITYPFPYRTFG 420
IQ V G+W+I RN ++HGTF R+AAA+FD NP S+ ++ + I+ F
Sbjct: 361 SIQVVTHPEGKWLIERNVRLHGTFKRQAAATFDDFNPESEQFFFEGMEAISPDF----LS 420
Query: 421 TTPSMAKSRQNEQPISRKNKSMVFSPNGPPGNIGKKIKHHFRAEWAVRYWAIYYPLKNEC 466
T+ KS +QP + KS++ P+ RA + + NE
Sbjct: 421 TSSDDRKSSTPDQPSAL--KSVIIKPD--------------RAATSPSF-------LNEE 480
BLAST of Sed0001869 vs. ExPASy TrEMBL
Match:
A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)
HSP 1 Score: 270.8 bits (691), Expect = 1.4e-68
Identity = 176/516 (34.11%), Postives = 249/516 (48.26%), Query Frame = 0
Query: 3 YYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQLI 62
++ +LP+ C VERK+F L +D S++ L+E GA K+FS+ + P +DWIR TL+ LI
Sbjct: 57 HFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPRDLDWIRCTLKSLI 116
Query: 63 DWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWKDF 122
P NRFF +TR + +WI KT N +G AEI+ + K K ++VPEG D GW F
Sbjct: 117 ATPNTNRFFLETRDSEQRIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPDKSGWVSF 176
Query: 123 VAMITDQVVTADIPKGATMNAKRKKKRGLTEEEWKKLNSQQNQSYANVVTNQGHTLIRVG 182
++MIT +V + + R ++ K +SYA VT +G
Sbjct: 177 LSMITPKVEVKAKTRPTFLPRTSPDCRLSPPIDYHK------RSYAKAVT-EGRPFATSD 236
Query: 183 -----DKSDPNEMNATESFDS--------------------------------------- 242
D SD + ++ DS
Sbjct: 237 SSDSYDSSDSSHSSSNSFCDSPSSDLLENTVVIVRRFFHDDWHKILQNLRKQTEESFTYN 296
Query: 243 --EGDKALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFR 302
+KAL+ + A LLC NKGW T+ + + FEKW P+ HA P ++PSYGGW FR
Sbjct: 297 AFHAEKALVHFSSNIPANLLCQNKGWSTVGKYSVRFEKWSPVYHATPKLIPSYGGWTTFR 356
Query: 303 GIPLHLWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDE 362
GIPLHLWN T IG C GL++V T +LIEA +KV NY GF+P N+ I D+E
Sbjct: 357 GIPLHLWNMMTFQQIGKACEGLIKVAEETRSAKNLIEARIKVRYNYSGFLPANVRIFDNE 416
Query: 363 GGEYVIQTVAPASGRWIIGRNQKVHGTFTREAAASFDIHNPSSKHYYIKRHITYPFPYRT 422
G ++ +Q V G+W+I RN ++HGTF R+AAASFD NP S+ ++ + +
Sbjct: 417 GNKFFVQVVTHPEGKWLIERNVRLHGTFKRQAAASFDDFNPESEQFFFEGSEAISPDF-- 476
Query: 423 FGTTPSMAKSRQNEQPISRKNKSMVFSPNGPPGNIGKKIKHHFRAEWAVRYWAIYYPLKN 466
T+ KS +QP + KS++ P+ A N
Sbjct: 477 LSTSSDGRKSSTPDQPSAL--KSVIIKPDRN---------------------ATLPSFLN 536
BLAST of Sed0001869 vs. ExPASy TrEMBL
Match:
A0A5A7TDG1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001050 PE=4 SV=1)
HSP 1 Score: 268.5 bits (685), Expect = 6.8e-68
Identity = 148/401 (36.91%), Postives = 224/401 (55.86%), Query Frame = 0
Query: 1 MSYYFNLPKKCTVERKDFSLDVDHRSRNKFLVLSERGAQKSFSMFLIPSSIDWIRTTLQQ 60
M+Y+ +LP+ C +ERK+F L +D +++ L+E GA K+FS+ + P +DWIR+TL+
Sbjct: 1 MAYFKSLPRSCKIERKEFVLLLDKYAKHTHYWLTETGAHKAFSIEVSPRDLDWIRSTLKS 60
Query: 61 LIDWPANNRFFKKTRTDDYSLWIEKTSNRRGRIAEIYMLGNKGGKVVLMVPEGYDYKGWK 120
LI+ P++NRFF + R ++ +WI KT N +G AEI+ + +K K ++VPEG + W
Sbjct: 61 LIETPSSNRFFLENRDYEHCIWIRKTRNGKGCTAEIFRVDHKNRKSCILVPEGLEKSCWV 120
Query: 121 DFVAMITDQV-VTAD-----IPKGA-------TMNAKRKKKRGLTEEEWKKLNSQQNQSY 180
F++MIT +V V A +P+ + ++ ++ E ++S + SY
Sbjct: 121 SFLSMITPKVEVKAKTRPIFLPRSSPEFRLSPPIDYHKRSYAKAVSEGRSSISSDSSDSY 180
Query: 181 ANVVTNQGH-----------------TLIRVGDKSDPNEM------NATESFD---SEGD 240
A+ ++Q L+R D ++ ESF +
Sbjct: 181 ASSDSSQSSGNSPCDSPFPVLLENTVVLVRRFFHDDWQKILQNLRKQTEESFTYNAFHAE 240
Query: 241 KALLALRTTDYARLLCYNKGWVTIDSFHLMFEKWDPLLHAVPTMLPSYGGWLRFRGIPLH 300
K L+ + A LLC NKGW T+ + + FEKW P HA P ++PSYGGW FRGIPLH
Sbjct: 241 KVLVHFNSNVPANLLCQNKGWTTVGKYTVRFEKWAPASHASPKLIPSYGGWTTFRGIPLH 300
Query: 301 LWNHKT---IGNICSGLMEVGNSTSLKMDLIEAHLKVSGNYRGFVPINIGIKDDEGGEYV 360
LWN T IG C GL++V T +LIEA LK+ NY GF+P + I D EG ++V
Sbjct: 301 LWNMMTFQQIGKACGGLIKVAEETKTARNLIEAKLKIRYNYSGFLPAYVKIFDQEGNKFV 360
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0034016.1 | 9.8e-69 | 35.56 | hypothetical protein E6C27_scaffold400G00850 [Cucumis melo var. makuwa] | [more] |
TYK10355.1 | 1.3e-68 | 35.38 | hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa] | [more] |
TYK23598.1 | 2.2e-68 | 34.82 | hypothetical protein E5676_scaffold500G001100 [Cucumis melo var. makuwa] | [more] |
TYJ99315.1 | 2.8e-68 | 34.11 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039309.1 | 1.4e-67 | 36.91 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SVM5 | 4.7e-69 | 35.56 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3CFS8 | 6.2e-69 | 35.38 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3DJE1 | 1.1e-68 | 34.82 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3BLV7 | 1.4e-68 | 34.11 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TDG1 | 6.8e-68 | 36.91 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |