Sed0001808 (gene) Chayote v1

Overview


Name	Sed0001808
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG01: 12669365 .. 12669908 (+)
RNA-Seq Expression	Sed0001808
Synteny	Sed0001808

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAACTGGGTCTTTTTTCTTTTCAGACCCATAAAAAAAGGTTGCAGAAATGGCGAGACTGATCGGAGAAACTGGCGGCGTTAATGAAACTTTTGGGGTCGCCGGTGACATTTACTTGCTGTTATGGGCGGCTCTGTTCACACTCTGCATAATCTCCACTATAATTTTCTCTTGCTCCGATGGCATGTCAAAGGACAGGGATTCCACGGCGGACGTTGACCTCTACGGCGGCGGTTGCGCCGCCGGGTGCGGCGCTGGATGTGGGGCTTAAAAAATTTTCACTTTTTATTTTATAGGGGAATTTCTTCACAGGCGACAAAAGCGAGAGCCTGTTGATTACTGCCATCATTTTTGTTAGAATTGTGATTTATGGTATGTCTCGTAGTGATTATGAAAATAATAAAGGTGTGTTTGGACCCATTTATATAAACGGTCGAGTTGGTTACCCAACCGATGTTTGCCCCACCGTTTATTATAAACCGCGGTTACCTAAACCTGCATACTCATTTATCTAAACCTTACATAATCAGCCTCTCAAACACAG

mRNA sequence

CTCAACTGGGTCTTTTTTCTTTTCAGACCCATAAAAAAAGGTTGCAGAAATGGCGAGACTGATCGGAGAAACTGGCGGCGTTAATGAAACTTTTGGGGTCGCCGGTGACATTTACTTGCTGTTATGGGCGGCTCTGTTCACACTCTGCATAATCTCCACTATAATTTTCTCTTGCTCCGATGGCATGTCAAAGGACAGGGATTCCACGGCGGACGTTGACCTCTACGGCGGCGGTTGCGCCGCCGGGTGCGGCGCTGGATGTGGGGCTTAAAAAATTTTCACTTTTTATTTTATAGGGGAATTTCTTCACAGGCGACAAAAGCGAGAGCCTGTTGATTACTGCCATCATTTTTGTTAGAATTGTGATTTATGGTATGTCTCGTAGTGATTATGAAAATAATAAAGGTGTGTTTGGACCCATTTATATAAACGGTCGAGTTGGTTACCCAACCGATGTTTGCCCCACCGTTTATTATAAACCGCGGTTACCTAAACCTGCATACTCATTTATCTAAACCTTACATAATCAGCCTCTCAAACACAG

Coding sequence (CDS)

ATGGCGAGACTGATCGGAGAAACTGGCGGCGTTAATGAAACTTTTGGGGTCGCCGGTGACATTTACTTGCTGTTATGGGCGGCTCTGTTCACACTCTGCATAATCTCCACTATAATTTTCTCTTGCTCCGATGGCATGTCAAAGGACAGGGATTCCACGGCGGACGTTGACCTCTACGGCGGCGGTTGCGCCGCCGGGTGCGGCGCTGGATGTGGGGCTTAA

Protein sequence

MARLIGETGGVNETFGVAGDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLYGGGCAAGCGAGCGA

Homology

[Close]

BLAST of Sed0001808 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-23
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MARLIGETGGVNETFGVAGDIYLLLWAALFTLCIISTIIFSCSDGMS-KDRDSTADVDLY 60
          MARL+ E G  N +FG+AGDIYLL WAALFTLCIISTIIFSCSDGMS KDR+STADV+LY
Sbjct: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60

Query: 61 GGGCAAGCGAGCGA 74
          G GCAAGCGAGCGA
Sbjct: 61 GAGCAAGCGAGCGA 74

[Close]

BLAST of Sed0001808 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   MARLIGETGGVNETFGVA-GDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLY 60
           MARL+ E    N +FG+A G+ Y L W ALFTLCIIST+IFSCSDGMSKDR+ST DV+LY
Sbjct: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88

Query: 61  GGGCAAGCGAGCGA 74
           GGGCAAGCGAGCGA
Sbjct: 89  GGGCAAGCGAGCGA 102

[Close]

BLAST of Sed0001808 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.4 bits (259), Expect = 4.3e-19
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1  MARLIGETGGVNETFGVAGDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLYG 60
          MARLIGE G V+ +FG++GDI  L  AALFTLCIIS I FSCSDG+SK+R+STADV+LYG
Sbjct: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60

Query: 61 GGCAAGCGA 70
          GGCAAGCGA
Sbjct: 61 GGCAAGCGA 69

[Close]

BLAST of Sed0001808 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  MARLIGETGGVNETFGVAGDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLYG 60
          M RL  +   V+ + G AG  +++LW AL  +CIIS IIFSC+DG+SK++ STAD +LYG
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELYG 60

Query: 61 GGCAAGCGAGCGA 74
          GGCAAGCGAGCGA
Sbjct: 61 GGCAAGCGAGCGA 70

[Close]

BLAST of Sed0001808 vs. NCBI nr
Match: KAB5531823.1 (hypothetical protein DKX38_018493 [Salix brachista])

HSP 1 Score: 81.3 bits (199), Expect = 3.9e-12
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 1  MARLIGETGGVNETFGVAGDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLYG 60
          MAR + E   V+   GV G   +LLWA L TLC++S IIFSC++G+SKD+ S AD  LYG
Sbjct: 1  MARPLKEVFTVDGGGGVDGSCLVLLWAVLLTLCLLSAIIFSCAEGLSKDKTSEADSTLYG 60

Query: 61 GGCAAGCGAGCG 73
          GGC A CGA CG
Sbjct: 61 GGCGAACGAACG 72

[Close]

BLAST of Sed0001808 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.5e-21
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1  MARLIGETGGVNETFGVA-GDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLY 60
          MARL+ E    N +FG+A G+ Y L W ALFTLCIIST+IFSCSDGMSKDR+ST DV+LY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of Sed0001808 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.5e-13
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  MARLIGETGGVNETFGVAGDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLYG 60
          M RL  +   V+ + G AG  +++LW AL  +CIIS IIFSC+DG+SK++ STAD +LYG
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELYG 60

Query: 61 GGCAAGCGAGCGA 74
          GGCAAGCGAGCGA
Sbjct: 61 GGCAAGCGAGCGA 70

[Close]

BLAST of Sed0001808 vs. ExPASy TrEMBL
Match: A0A5N5KN69 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_018493 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 1  MARLIGETGGVNETFGVAGDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLYG 60
          MAR + E   V+   GV G   +LLWA L TLC++S IIFSC++G+SKD+ S AD  LYG
Sbjct: 1  MARPLKEVFTVDGGGGVDGSCLVLLWAVLLTLCLLSAIIFSCAEGLSKDKTSEADSTLYG 60

Query: 61 GGCAAGCGAGCG 73
          GGC A CGA CG
Sbjct: 61 GGCGAACGAACG 72

[Close]

BLAST of Sed0001808 vs. ExPASy TrEMBL
Match: A0A2P5FVW4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MARLIGETGGVNETFGV--AGDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDL 60
          M RL  E  GV+   G   +G   + L   L TLCI+ST+IFSC+DG+SK++ S AD +L
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 73
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of Sed0001808 vs. ExPASy TrEMBL
Match: B9I2J4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G054000 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.5e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 16 GVAGDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLYGGGCAAGCGAGCG 73
          GV G   +LLWA L TLC++S I+FSC++G+SKD+ S AD  LYGGGCAAGCGA CG
Sbjct: 17 GVHGSCLVLLWAVLLTLCLLSAIVFSCAEGVSKDKTSEADSTLYGGGCAAGCGAACG 73

[Close]

BLAST of Sed0001808 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 9.0e-07
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 19 GDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLYGGGCAAGCGAGCG 73
          G++ L +WAA+    +I+ +IFSCSD  SK   +    D+ G  CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND---DVNGSSCAAGCGGGCG 64

[Close]

BLAST of Sed0001808 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 18 AGDIYLLLWAALFTLCIISTIIFSCSDGMSKDRDSTADVDLYGGGC-AAGCGAGCG 73
          A  ++ +++ A+   CI+S ++FSC+DG+S +R +T+     GGGC  AGCG GCG
Sbjct: 21 ASYLFHVVFLAVIGCCILSALLFSCADGVSDNR-ATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:

BLAST of Sed0001808 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584341.1	2.2e-23	82.43	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652552.1	1.3e-20	74.32	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
KAG6572949.1	4.3e-19	75.36	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015882794.1	1.3e-12	60.27	uncharacterized protein LOC107418606 [Ziziphus jujuba]	[more]
KAB5531823.1	3.9e-12	56.94	hypothetical protein DKX38_018493 [Salix brachista]	[more]

BLAST of Sed0001808 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001808 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	6.5e-21	74.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
A0A6P3ZT85	6.5e-13	60.27	uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860...	[more]
A0A5N5KN69	1.9e-12	56.94	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_018493 PE=4 SV=1	[more]
A0A2P5FVW4	3.2e-12	56.76	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV...	[more]
B9I2J4	5.5e-12	64.91	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G054000 PE=4 ...	[more]

BLAST of Sed0001808 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	9.0e-07	46.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18250.1	2.9e-05	42.86	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001808.1	Sed0001808.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane