Sed0001788 (gene) Chayote v1

Overview
NameSed0001788
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTransmembrane protein
LocationLG01: 15866719 .. 15869696 (+)
RNA-Seq ExpressionSed0001788
SyntenySed0001788
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGCAACGATTCTGGTGATGGAGAAGTATCTTCAGCACAAGCAGTTTTGCTCGGAGCTTTAGCCCCTGGTGTCAACGTTAGTTCTAATTCACTTTTGGTTTTCAATTTCCCCATTCTTCTGATTGAAATTTCCATTCTTTTGTACTTCTGAAATCAGGGTCCTACATGGAATGCGCTCAAATCAACGTTTCTGATGTTGGGTCTTTGTCTTCTCCTGATGCTTGGCCTTGCATTCTCTTCCAGCGATTCTTGGTTGATTCTTCATGTTACCTTCCTTGTGGTTATAACTGTCACTCTTTTCTTGCTTCTTAACTGGTATGTTTGGCTTGTTTTTTTTGCTCTGGATTTGCATATTGTTATGGTTCTTCTACATGTATGTGTCTACTGTCTTGTGAATGCTTATGATTTTGAATGTGGGGTTTGTTTATACTTCGGTTTGAAACACTTTTGATCCGTAACTTTTACTAGCATTTTAGTTTTTGAACTAGTTTGTGATGATTTAGTGCCTATACTCTCAATTTTGCTACAATTTCGTCCGGTAATAACTTAGTCGTACTTTAAAATTTATAGAACTGTTTCGGTCGAAAATACTCACCTTGTGGCAATTGTCCCACATTGAAAAGGTGAGGATTCTTTAACACTTCGATAAGAGATATGTTACTTCCCTCGTTATCAATTAATTTTGAGGTGGAACTTTATATTATCTAATAAGAGCCATAATGATTTTATCCTAATGTGAAATAAACGTGGTTAAAATTTAATGAATTTTCTTACGTTTGTAGATTAAAGAACTGACAAGGGGGCTAAGGTGGTTTATAAAACTAGCCTAGGCCCTAGAGGTGGATATTTGATCCTGAATAATCTTCCTTATATCAATACAACTTCCTTGTGTTCTATAAAAAAATACAAAAATAAAGTTGTTTCGTCCTCTTTGAATAACCATTTCGTTAGCTTGTTTGTATCCCAAATTCTCTGGAAGTATTGGAACCCTAACCGAATTCAAAAGACCAGACTAGTTTTTGAAAACAACTTTTTCTTAGTTTTGTAATTTGATTTGGTTTTTATAAACCTAAGTAAAATGTAGATATCAAGAAAAAAAAAACTATAGGTTGGAGTGATAGTTGTAGCCTGGAGGTTTAATTTTTTTTTAAAATCAAATGTTTATTAAATGAGCTGCCCAATTAGTTGTTACAATTTGGAATATTTAAAGTTAGGGAATGACCTTCTGAGGAGGGAGACTTACCCTGATTTAGTCTGTGTTGTGTGGAATCCCACGCTACTTTCCTTGGAGTGTTTATGAGAAATTTCTTGTGGGAAGGAATGGGAGGATCTTACTTGGTTAATTGGAAGGTAGTTTCAAAGGCTTTGGAGGGTAATGCATTGGTAACCTGAGATAATGTTTTGAAACATTTTTGGCCAAATGGTTGTAATGTTTCTTCAGGGAGCCTAATACTTGAGTGGGTAGTAGGCTATGGGGTTATGTGCTCAAGTAAACACCTCTATTTGGCTATTATTTCTGGTTTTCCCATGTTCTTTCAGTTCAATGAAATCCTTTGTCAGGGAGGTCTCATATCTAGTGTTTTAAAAGGCGCCCCTCATGTTCTTTCAATTCAATGAAATCCTTTGTCAGGGAGGTCTCTCATATCTAGTGTTTTAAAAGGCGCGCCAGAGCTCAAGTCCTGCCTCTAGCACCTCACTTTTCCCAAGCGAAGTGCGTGTAATAAGACGCGGGCATTATAGCGCCTTAACATGAAGCCCTAGGCGCCAAAAGGCGCGTGGCTTTTGGTATTTTTTATTTCCTTTGCGCTTTTTGTGTTTTAGATTCCTGTATTAGGCCGTTCGAAGAGCATGAATGTTGATAGTTGAATATTATGTATGTTTTATATATTATTCTTGGTTAAATCTTCATTTATGTCCATGAAAAGTGTTTTTATTACGTATACATACATATATATAATTGTTTTGTGTTTTTTAGATAGTGCGCCTTAAGTAAAAAAGCTCTCGTCTTTTGGTGCGCCTTACGCTTTTTAAAACACTGCTCATATCTACTTTTAGGAAGATTCTGTTGGGAATAAACACTATTCTAATATGGATAAATTATTCCCTCTCTTGTGTTCCTAATGAAAAATCAGCAAGTATATAGTATGGTAGAAATATCAAGTATAACACAACGATTTTTAATGTAGAAAAACCTCCTCAAGGCGAGGAGTAAAAAACCACGGACCGAAGTCGAATCTCCACTGTAATCGATAATGGGCTACAACAAGTTCTCTCTAGTTACAACTAGAGGTATACAACACATAAAAACTCAAGATAAACTAATCTTGGCAACAAACAACACAAATCAAGAGAGATAAATAGAAAGATCTCACAAAAATGTGTAACCGAATCGTCACTGGAATCTGGCTGTAGAAACCTCCAAACTCGATCTCCACCGTTCAGATTGAAGACCCTCGTGTCAAGAACACGCTGTCCAAATTTCAGCTCGATCCAACGGTGCAATCGCTCGGAAACGCCAAAATACCGAAGCTGGGCAGAAACCTCTTTTCTCTCTATTTACTTTCTCTCTCTAAGTTGTTTCTCTCTCTGGCTGCTGATTTCCAGCTCTTCTTTCTCTTGTGTGTTCTCTCTACCAAAGTGACAAAATGCACTTTAAAACACTTATCCCTAATGAGCCTTATTTGATGGGCCTTCACAATGTGAATAAAAACCCAACAGATTCTTTGGTGGGTGACAAGCATTTTCTTTCCATTTACTCGCATATATTAAGTGTGATAAAATGTACATCTTTTTTCAGAACGATGTTACTAATTGCCCTACATTGTTTTAATCATTTAGATGCTTATGAATGAGTTGTTCTTTTTATCTCTATTCAGGTTTCTTTCTGAGACTGGCTTGGTTTCAGTGAAGAACCAAATGGAAGAGCTTCAGCTGGTGCCAAAGAGTCAAGATAACATCGTAAAGAACGATTGA

mRNA sequence

ATGGCGGGCAACGATTCTGGTGATGGAGAAGTATCTTCAGCACAAGCAGTTTTGCTCGGAGCTTTAGCCCCTGGTGTCAACGGTCCTACATGGAATGCGCTCAAATCAACGTTTCTGATGTTGGGTCTTTGTCTTCTCCTGATGCTTGGCCTTGCATTCTCTTCCAGCGATTCTTGGTTGATTCTTCATGTTACCTTCCTTGTGGTTATAACTGTCACTCTTTTCTTGCTTCTTAACTGGTTTCTTTCTGAGACTGGCTTGGTTTCAGTGAAGAACCAAATGGAAGAGCTTCAGCTGGTGCCAAAGAGTCAAGATAACATCGTAAAGAACGATTGA

Coding sequence (CDS)

ATGGCGGGCAACGATTCTGGTGATGGAGAAGTATCTTCAGCACAAGCAGTTTTGCTCGGAGCTTTAGCCCCTGGTGTCAACGGTCCTACATGGAATGCGCTCAAATCAACGTTTCTGATGTTGGGTCTTTGTCTTCTCCTGATGCTTGGCCTTGCATTCTCTTCCAGCGATTCTTGGTTGATTCTTCATGTTACCTTCCTTGTGGTTATAACTGTCACTCTTTTCTTGCTTCTTAACTGGTTTCTTTCTGAGACTGGCTTGGTTTCAGTGAAGAACCAAATGGAAGAGCTTCAGCTGGTGCCAAAGAGTCAAGATAACATCGTAAAGAACGATTGA

Protein sequence

MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWLILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND
Homology
BLAST of Sed0001788 vs. NCBI nr
Match: XP_038876938.1 (uncharacterized protein LOC120069298 [Benincasa hispida])

HSP 1 Score: 184.1 bits (466), Expect = 6.5e-43
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           MA N+SGDGEVSSAQAVLLGALAPGVNGPTW  LKSTFLMLGLCL+LMLGLAFSSSDSWL
Sbjct: 1   MASNNSGDGEVSSAQAVLLGALAPGVNGPTWTTLKSTFLMLGLCLILMLGLAFSSSDSWL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND 112
           ILHVTFLV ITVTLFLLLNWFLS+TGLVSVKNQMEEL L PKSQD   KN+
Sbjct: 61  ILHVTFLVAITVTLFLLLNWFLSQTGLVSVKNQMEELHLAPKSQDKSEKNE 111

BLAST of Sed0001788 vs. NCBI nr
Match: XP_004146608.1 (uncharacterized protein LOC101210942 [Cucumis sativus] >KGN64689.1 hypothetical protein Csa_013713 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           MA NDSGDGEVSSAQAVLLGALAPGVNGPTW  LKS FLMLGLCL+LML LAFSSSDSWL
Sbjct: 1   MADNDSGDGEVSSAQAVLLGALAPGVNGPTWTTLKSAFLMLGLCLILMLALAFSSSDSWL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND 112
           ILHVTFLVVIT TLFLLLNWFLS+TGLVSVKNQMEELQL PKSQD   KN+
Sbjct: 61  ILHVTFLVVITATLFLLLNWFLSQTGLVSVKNQMEELQLAPKSQDKSEKNE 111

BLAST of Sed0001788 vs. NCBI nr
Match: XP_022954415.1 (uncharacterized protein LOC111456676 [Cucurbita moschata] >XP_023542806.1 uncharacterized protein LOC111802603 [Cucurbita pepo subsp. pepo] >KAG7012441.1 hypothetical protein SDJN02_25193 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           MAG+DSGDGEVSSAQAVLLGALAPGVNGPTW  LKS FLMLGLCL+LML LAFS+SDSWL
Sbjct: 1   MAGHDSGDGEVSSAQAVLLGALAPGVNGPTWTTLKSAFLMLGLCLVLMLSLAFSASDSWL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND 112
           ILHVTFLVVIT TLFLLLNWFLSETGLVSVKNQMEELQ+ PKSQD   KN+
Sbjct: 61  ILHVTFLVVITATLFLLLNWFLSETGLVSVKNQMEELQMSPKSQDKSEKNE 111

BLAST of Sed0001788 vs. NCBI nr
Match: XP_022994498.1 (uncharacterized protein LOC111490203 [Cucurbita maxima])

HSP 1 Score: 180.6 bits (457), Expect = 7.2e-42
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           MAG+DSGDGEVSSAQAVLLGALAPGVNGPTW  LKS FLMLGLCL+LML LAFS+SDSWL
Sbjct: 1   MAGHDSGDGEVSSAQAVLLGALAPGVNGPTWTTLKSAFLMLGLCLVLMLSLAFSASDSWL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND 112
           ILHVTFLVVIT TLFLLLNWFLSETGLVSVKNQMEELQ+ PKS+D   KN+
Sbjct: 61  ILHVTFLVVITATLFLLLNWFLSETGLVSVKNQMEELQMSPKSRDKSEKNE 111

BLAST of Sed0001788 vs. NCBI nr
Match: XP_008442704.1 (PREDICTED: uncharacterized protein LOC103486495 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 7.2e-42
Identity = 97/111 (87.39%), Postives = 101/111 (90.99%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           MA NDSGDGEVSSAQAVLLGALAPGVNGPTW  LKS FLMLGLCL+LML LAFSSSDSWL
Sbjct: 1   MADNDSGDGEVSSAQAVLLGALAPGVNGPTWTTLKSAFLMLGLCLVLMLALAFSSSDSWL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND 112
           ILHVTFLVVIT TLFLLLNWFLS+TGLVSVKNQMEELQL PKS+D   KN+
Sbjct: 61  ILHVTFLVVITSTLFLLLNWFLSQTGLVSVKNQMEELQLAPKSRDKSEKNE 111

BLAST of Sed0001788 vs. ExPASy TrEMBL
Match: A0A0A0LUL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074940 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.4e-43
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           MA NDSGDGEVSSAQAVLLGALAPGVNGPTW  LKS FLMLGLCL+LML LAFSSSDSWL
Sbjct: 1   MADNDSGDGEVSSAQAVLLGALAPGVNGPTWTTLKSAFLMLGLCLILMLALAFSSSDSWL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND 112
           ILHVTFLVVIT TLFLLLNWFLS+TGLVSVKNQMEELQL PKSQD   KN+
Sbjct: 61  ILHVTFLVVITATLFLLLNWFLSQTGLVSVKNQMEELQLAPKSQDKSEKNE 111

BLAST of Sed0001788 vs. ExPASy TrEMBL
Match: A0A6J1GSC6 (uncharacterized protein LOC111456676 OS=Cucurbita moschata OX=3662 GN=LOC111456676 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           MAG+DSGDGEVSSAQAVLLGALAPGVNGPTW  LKS FLMLGLCL+LML LAFS+SDSWL
Sbjct: 1   MAGHDSGDGEVSSAQAVLLGALAPGVNGPTWTTLKSAFLMLGLCLVLMLSLAFSASDSWL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND 112
           ILHVTFLVVIT TLFLLLNWFLSETGLVSVKNQMEELQ+ PKSQD   KN+
Sbjct: 61  ILHVTFLVVITATLFLLLNWFLSETGLVSVKNQMEELQMSPKSQDKSEKNE 111

BLAST of Sed0001788 vs. ExPASy TrEMBL
Match: A0A6J1K5C1 (uncharacterized protein LOC111490203 OS=Cucurbita maxima OX=3661 GN=LOC111490203 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.5e-42
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           MAG+DSGDGEVSSAQAVLLGALAPGVNGPTW  LKS FLMLGLCL+LML LAFS+SDSWL
Sbjct: 1   MAGHDSGDGEVSSAQAVLLGALAPGVNGPTWTTLKSAFLMLGLCLVLMLSLAFSASDSWL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND 112
           ILHVTFLVVIT TLFLLLNWFLSETGLVSVKNQMEELQ+ PKS+D   KN+
Sbjct: 61  ILHVTFLVVITATLFLLLNWFLSETGLVSVKNQMEELQMSPKSRDKSEKNE 111

BLAST of Sed0001788 vs. ExPASy TrEMBL
Match: A0A1S3B5U3 (uncharacterized protein LOC103486495 OS=Cucumis melo OX=3656 GN=LOC103486495 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.5e-42
Identity = 97/111 (87.39%), Postives = 101/111 (90.99%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           MA NDSGDGEVSSAQAVLLGALAPGVNGPTW  LKS FLMLGLCL+LML LAFSSSDSWL
Sbjct: 1   MADNDSGDGEVSSAQAVLLGALAPGVNGPTWTTLKSAFLMLGLCLVLMLALAFSSSDSWL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQDNIVKND 112
           ILHVTFLVVIT TLFLLLNWFLS+TGLVSVKNQMEELQL PKS+D   KN+
Sbjct: 61  ILHVTFLVVITSTLFLLLNWFLSQTGLVSVKNQMEELQLAPKSRDKSEKNE 111

BLAST of Sed0001788 vs. ExPASy TrEMBL
Match: A0A1R3H4F3 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31450 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.0e-33
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 1   MAGNDSGDGEVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWL 60
           M    +  GE+SSAQAVLLGALAPGVNGPTWN LKSTFLMLGLCL LMLGLAFSSSDS L
Sbjct: 1   METKQAAGGEISSAQAVLLGALAPGVNGPTWNTLKSTFLMLGLCLALMLGLAFSSSDSSL 60

Query: 61  ILHVTFLVVITVTLFLLLNWFLSETGLVSVKNQMEELQLVPK 103
           ILHV FLV+IT+TLFLLLNWFL +TGLVSV++QM+E+ L PK
Sbjct: 61  ILHVAFLVLITITLFLLLNWFLEQTGLVSVEHQMQEMDLAPK 102

BLAST of Sed0001788 vs. TAIR 10
Match: AT1G28250.1 (unknown protein; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-27
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 0

Query: 10  EVSSAQAVLLGALAPGVNGPTWNALKSTFLMLGLCLLLMLGLAFSSSDSWLILHVTFLVV 69
           ++SS +AV LGALAPGVNGPTWN L+  FL+LGLCL  ML +AF+S  S L++HV FL+V
Sbjct: 6   QISSTEAVFLGALAPGVNGPTWNTLRFAFLLLGLCLAFMLSVAFTSGQSMLLVHVGFLIV 65

Query: 70  ITVTLFLLLNWFLSETGLVSVKNQMEELQLVPKSQ 105
           I  TLF+LLNWFL++TGLV V+ QM+EL L+P  +
Sbjct: 66  IASTLFILLNWFLAQTGLVQVETQMQELNLLPNDK 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876938.16.5e-4388.29uncharacterized protein LOC120069298 [Benincasa hispida][more]
XP_004146608.11.1e-4288.29uncharacterized protein LOC101210942 [Cucumis sativus] >KGN64689.1 hypothetical ... [more]
XP_022954415.12.5e-4287.39uncharacterized protein LOC111456676 [Cucurbita moschata] >XP_023542806.1 unchar... [more]
XP_022994498.17.2e-4286.49uncharacterized protein LOC111490203 [Cucurbita maxima][more]
XP_008442704.17.2e-4287.39PREDICTED: uncharacterized protein LOC103486495 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LUL65.4e-4388.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074940 PE=4 SV=1[more]
A0A6J1GSC61.2e-4287.39uncharacterized protein LOC111456676 OS=Cucurbita moschata OX=3662 GN=LOC1114566... [more]
A0A6J1K5C13.5e-4286.49uncharacterized protein LOC111490203 OS=Cucurbita maxima OX=3661 GN=LOC111490203... [more]
A0A1S3B5U33.5e-4287.39uncharacterized protein LOC103486495 OS=Cucumis melo OX=3656 GN=LOC103486495 PE=... [more]
A0A1R3H4F33.0e-3378.43Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31450 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G28250.11.8e-2762.11unknown protein; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001788.1Sed0001788.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane