Sed0001749 (gene) Chayote v1

Overview


Name	Sed0001749
Type	gene
Organism	Sechium edule (Chayote v1)
Description	serine/arginine-rich-splicing factor SR34-like
Location	LG07: 2395526 .. 2400179 (+)
RNA-Seq Expression	Sed0001749
Synteny	Sed0001749

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAACCGTATCATATATCTACTTGTGCTACTAACCTTCAATTTCGTAACCCTAACATTGACAGTTCTCTCACCTCTGCACTTCGTCGGCGACAGATCGGAATCGAGGTAGCCTTCAAATCAAACGCTGAATCTGCATTTATTAATTTGAATACAGTATGTTCTTCAAATTTGATCATATTCGAGATTTTGATTCCGTAGTTTCTGATTGCATTTTTCTGTAATGCTATTCGTTTCTACTTTCATCTCTTTAGGAAAAATGAGTAGCCGCGCGAGCAGAACAATCTATGTCGGAAATCTCCCGGGTGATATTCGTGAAAAGGAAGTGGAAGATTTATTTTACAAGGTACGGAATTTTGTTACCCCTTTGTAATTTGAGGTCTGTGTCTGGATATTGCTGTCTTCTTGGCTGGATTTTTTTTTTTTTTTTTTGGGATTATTTTACTACCCTTTGATATGGGGAGCGCGTTAAATTATGGTATGTTTGTTGGATCTTCCTTCATATAATTTAGTGTATTCTGCATGAGTTTAAGTTTAGAATACTAAGGCCGGTTTGATAATCATTTGGTTTTTTTGTTTTTGGATTTTGGAATTTAAGCCTATTCTTACCCTCAAATTTCTTACTTATTCCATCTTTCCTACCATGCATGCATTTTCCTTAAGAAAATATGTGAATATTAACCAAATTTCAAAAACAAGACAAGCTTTTGGAAGCTATTTTTTTTCTCCAAATCTTGGTTTTGTTTCTAAAATCATAGTTAAGATGTAGGTAGATATCCCAAGCAAGAAAAACATGTGATAAGATAGTTGTTGTAGGTTTAAATTTCAAAAAACCAAAAACTAAAAACAAAATAGTTATCAACTGAGGGCCAAGTGTTTTTCTTTCGGTAATTGTGAGGATGGATTAGTGAAGAGCATACATATGTAGGAACAATTCCCACTTTTTAATTGTATATGCATGTTATGGATTTTCTTTCCTAAAGGTTGCAGATGATATAGGACAACTTTTAATCATGTCTGGAGTTTTATTTGTTGAAAATGATTCATCTAAACCTATTCTCATGTTACATTTTTATCATAGTATGGTCGCATAGCCCATATGGATCTCAAGGTTCCACCAAGACCTCCTGGTTATGCATTTGTTGAGGTGAGCTTATTGAACATGATAGGATATATTCTCTTCTTTTTGAATTGTTATTACTTTTCTTCTCAATGTGGATTTAATAATGTAGTTTGAAGATCCGGAAGATGCTCAAGATGCCATTCGTGGTCGTGATGGCTATGATTTTGATGGCCACAGGCTGCGCGTGAGTCACTATGTCTATTTCAATTGTTTTATCATTTTTTAACTTATTGTTGGCTTTGCAGTTGTTAAATATGCATTCTTTATTTCTGTCTATTTCTAGGTTGAACTTGCTCATGGTGGTCGTGGTCATGGTCATTCATCATCTAATGATCGTTATAATAGTCATGGTAGCAGCCGTGGTGGTGGGCGTGGAGCATCTCGGCGCACTGATTATCGTGGTATACACCATTTTATAGGGACCATACAATTCTTAGACATTGTAAATAAACGTAGATATTGTAATTAATGGTTTTTGGTCAATGCAGTGTTAATCTCAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAGGTAAGCATCATTCTATTTGATATGAAGTGTAATACAGATGGAAACTAATTTTCCTGAGACACTGATCCCCACATTATTTAATGTTCAAGGATCATATGCGGCGAGCTGGGGATGTTTGTTTCTCCCAAGTGTTTCGTGATGGTAGCGGTAAGTTACTTTCTGATGAAATGGTGACAAATTCACTATAACGTGATGATGTCAACCATAATTATTTCTTTTGATGTGATGTAGGAACCACAGGGATTGTGGATTACACTAACCATGATGACATGAAGTATGCGGTAAGTAATTTTTATCTCTGTTCTAAGATGTTTGAAATGTTGAACCTTAATGATCACCTGGCATGTTGGATTGCCACTATACGAAGAGTTGAAGCTTCGGTTTTGTGATATGCTCTAATATTTGAGTATTTGTCAATTGTCACTACAGATTAAAAAACTTGACGATTCTGAGTTTCGCAATGCATTTTCTCGGTCATATGTTCGGGTATGAACCATACCTTCTTATTCTATTAACTAACTTTTAAAAATGTAAATAAATTAATTTTATGATGTCTTCTTGTTTCTCACCTATTTTAATTTTGTATTTGGCAGGTGAGAGAATATGATTCGAAGAGGGATCGCTCTAGGAGTCCTAGTCGTGGGCGGTCACACTCTAGAGGGAGGAGTTATAGTCGCAGTCGTAGCAGAGGCCGGAGTAATAGCAAAAGCCACAGTAGGAGGTTGGTTTATTTTTTTAGCATCACATTATTCTTAGCACACTTAAGTTCTGTATTTATATTCTATTTACTCTTGAGCAGCAAGTCTCCAAAAGGTAAATCTTCCCAGCGGTCACCAGTTAAATCCCGATCAAGGTCTGCCTCCCCTGCTCGCTCTCGGTCAAAGTCATCATCTCTGTCAGGGTACTCATTCTCAAACTACTATCTTTTAATTCATCCTTAATTTCATTTATTCAATTTTATTCTTTTTTTTTAATCTAACTACAGTCTCATTGTTTATCTACATTTATATGATTTGAGTTCGATCACTCAAACAAGATCAGTTTGTTTCATCCGTCTTTCATTGGGAAACATGTTAGACTGGGTGAAATAAATATAGAAGTACTCAAAGTGAACTAATTCTTTTCGTTTGCTCAAGCATGAAATTGGTTAAAACTTACCAATGGATTTGTAATTACTTTTACGGGTCGCTATATTTTTTCATGTGGCATTGTGGCTTGTACTAGTCTCCTCTCCTGAATGTAAAACCTACTTTTTTTTCCCAAAGTCTTGGATGAATTCTGAGAATGTTGGAGATGAATACTGGACAGACTTGGGCATTGTGTGGGACCCTCTATTGGAATGCTTGGTAAACTTTATCCTAATTGACTCAATTTAGTTATTATTATTATTTATCTTTGATTCTTCTTTAATTTTATTAACCTTGTCCTGGCTTTCCCCTTTATTCTAGCATCGATGTTTTAGTTCAACAACCAGGATGTATAAGACATGAGTAGATTTCTTTGATACAGTGTCCTTTTTGTGTGTGAAAATTACTTGTTTGTGTTTTAGATACGGAAATGTGCGGCATACCGGGGATTGGATATTAGGATCTTGATGGGATTTGTTTCATTTGCCTTCAATGCTTTTGGTCGAGAAGGTATGCTGTTTTTTAGATGGGCAGCTTTGAAAACCTTCTAGTACCTCTGTTCTAATGCTTTTGGCAATGCAATGTCCATGCATAGATTGGGATCAAAGAAGATCATGGATTGCAATAATATAGAGCTGGATATTATGCACTAAGTGCTATTTGGACTTGGAAGTCATCATCACTTTCATTTACATTTTCTGCTGCAAAGATTTGCCAAGCTCTATAGGACGCATTATCTGGATTCATTGTGGACTCTTTGAGGAGGCACAGTAGGGAAGAATGTTCCTCCCCCGTCCACTGAAGTCTATAATATATATAGTTTTATTTAGATTAAAGTTTTCTAATTTTAGGTCGTTACTGTTGGCGTCTTACGATTTGATTTGTCATATGGTAGTTAAACTGCTAAAATACTATTTCCCTTTTTCTACTTGCACAATGTGGATGAGGCGTCAGGCTCTTGGATTGAATTTGGTAAATGAGGCGTGGATTTTTAAACCTGAGTTGTTTCTGGACATTTTGCTTGCAGATCGCGATCAAGATCCAGGTCACCAGTGCCCAATGTAAGTGATCCCTGTTACTAAGTTAGTCATTGCTGGTGTTGGTATTAGAATTCATCCAAATTATATGTGGTTTTTGAGTTAACTAACCCAAGTAAACATATACTTGCAAAAGCCCTTTCGGTTTTCGAGTTAACTTGTATCTCCTTGTCAATCCATTCGATTTTTAGTTGATATCTACCTTGTGCTGTATCTGTACGATAACAATTTTTGTGGCAGCGTGACAAACGTACTAGCAAAAGCCCAAAAAGGCGTGATGCTAGCAAAAGCCCCGTAAGGCGTGATGCTAGCAAAAGCCCCGTAAGGCGTGATGCTAGCAAAAGCCCCAAAAGGCGTGCCGCTAGCAAAAGCCCCAAAAGGCGTGCCGCTAGCAAAAGCCCCAAAAGGCGTGGCGTAAGCAGAAGCCCTAGCCGAAGCAGGAGTCCTTCCCGGTAGGAGCTATCGGTAATTTTGTTTTTACAGGACACTGTAAACGCCAGTGATTATGCATACTTGTCTTGTTCAAAATTGTAATTCTTTTTTCTGACGTTTAGTCTTTTTGAACAGATGAAGATAGAAGCAGTTGTGTTGATTTTCCTAGGCGGGAAATGGAGTTGGACTAATCTGTGAACCTATCAGAATATACTTTATTAGACCTTTTAAAGATAAACTATGTTTTTTGTGGACCCTTCATGTATGTGTTTTATTCTTATAGAGATGTTAAACTTTTAACCTCCGTTATTTAGTATTATATATATTGCTGAGGTGTTAAACTGAGCTTGAGCTGCTTGTTTCTCTAAGCAGATTATTCACATCACTAGAATTGGATAGAGC

mRNA sequence

ATAACCGTATCATATATCTACTTGTGCTACTAACCTTCAATTTCGTAACCCTAACATTGACAGTTCTCTCACCTCTGCACTTCGTCGGCGACAGATCGGAATCGAGGTAGCCTTCAAATCAAACGCTGAATCTGCATTTATTAATTTGAATACAGAAAAATGAGTAGCCGCGCGAGCAGAACAATCTATGTCGGAAATCTCCCGGGTGATATTCGTGAAAAGGAAGTGGAAGATTTATTTTACAAGTATGGTCGCATAGCCCATATGGATCTCAAGGTTCCACCAAGACCTCCTGGTTATGCATTTGTTGAGTTTGAAGATCCGGAAGATGCTCAAGATGCCATTCGTGGTCGTGATGGCTATGATTTTGATGGCCACAGGCTGCGCGTTGAACTTGCTCATGGTGGTCGTGGTCATGGTCATTCATCATCTAATGATCGTTATAATAGTCATGGTAGCAGCCGTGGTGGTGGGCGTGGAGCATCTCGGCGCACTGATTATCGTGTGTTAATCTCAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAGGATCATATGCGGCGAGCTGGGGATGTTTGTTTCTCCCAAGTGTTTCGTGATGGTAGCGGAACCACAGGGATTGTGGATTACACTAACCATGATGACATGAAGTATGCGATTAAAAAACTTGACGATTCTGAGTTTCGCAATGCATTTTCTCGGTCATATGTTCGGGTGAGAGAATATGATTCGAAGAGGGATCGCTCTAGGAGTCCTAGTCGTGGGCGGTCACACTCTAGAGGGAGGAGTTATAGTCGCAGTCGTAGCAGAGGCCGGAGTAATAGCAAAAGCCACAGTAGGAGCAAGTCTCCAAAAGGTAAATCTTCCCAGCGGTCACCAGTTAAATCCCGATCAAGGTCTGCCTCCCCTGCTCGCTCTCGGTCAAAGTCATCATCTCTGTCAGGATCGCGATCAAGATCCAGGTCACCAGTGCCCAATCGTGACAAACGTACTAGCAAAAGCCCAAAAAGGCGTGATGCTAGCAAAAGCCCCGTAAGGCGTGATGCTAGCAAAAGCCCCGTAAGGCGTGATGCTAGCAAAAGCCCCAAAAGGCGTGCCGCTAGCAAAAGCCCCAAAAGGCGTGCCGCTAGCAAAAGCCCCAAAAGGCGTGGCGTAAGCAGAAGCCCTAGCCGAAGCAGGAGTCCTTCCCGATGAAGATAGAAGCAGTTGTGTTGATTTTCCTAGGCGGGAAATGGAGTTGGACTAATCTGTGAACCTATCAGAATATACTTTATTAGACCTTTTAAAGATAAACTATGTTTTTTGTGGACCCTTCATGTATGTGTTTTATTCTTATAGAGATGTTAAACTTTTAACCTCCGTTATTTAGTATTATATATATTGCTGAGGTGTTAAACTGAGCTTGAGCTGCTTGTTTCTCTAAGCAGATTATTCACATCACTAGAATTGGATAGAGC

Coding sequence (CDS)

ATGAGTAGCCGCGCGAGCAGAACAATCTATGTCGGAAATCTCCCGGGTGATATTCGTGAAAAGGAAGTGGAAGATTTATTTTACAAGTATGGTCGCATAGCCCATATGGATCTCAAGGTTCCACCAAGACCTCCTGGTTATGCATTTGTTGAGTTTGAAGATCCGGAAGATGCTCAAGATGCCATTCGTGGTCGTGATGGCTATGATTTTGATGGCCACAGGCTGCGCGTTGAACTTGCTCATGGTGGTCGTGGTCATGGTCATTCATCATCTAATGATCGTTATAATAGTCATGGTAGCAGCCGTGGTGGTGGGCGTGGAGCATCTCGGCGCACTGATTATCGTGTGTTAATCTCAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAGGATCATATGCGGCGAGCTGGGGATGTTTGTTTCTCCCAAGTGTTTCGTGATGGTAGCGGAACCACAGGGATTGTGGATTACACTAACCATGATGACATGAAGTATGCGATTAAAAAACTTGACGATTCTGAGTTTCGCAATGCATTTTCTCGGTCATATGTTCGGGTGAGAGAATATGATTCGAAGAGGGATCGCTCTAGGAGTCCTAGTCGTGGGCGGTCACACTCTAGAGGGAGGAGTTATAGTCGCAGTCGTAGCAGAGGCCGGAGTAATAGCAAAAGCCACAGTAGGAGCAAGTCTCCAAAAGGTAAATCTTCCCAGCGGTCACCAGTTAAATCCCGATCAAGGTCTGCCTCCCCTGCTCGCTCTCGGTCAAAGTCATCATCTCTGTCAGGATCGCGATCAAGATCCAGGTCACCAGTGCCCAATCGTGACAAACGTACTAGCAAAAGCCCAAAAAGGCGTGATGCTAGCAAAAGCCCCGTAAGGCGTGATGCTAGCAAAAGCCCCGTAAGGCGTGATGCTAGCAAAAGCCCCAAAAGGCGTGCCGCTAGCAAAAGCCCCAAAAGGCGTGCCGCTAGCAAAAGCCCCAAAAGGCGTGGCGTAAGCAGAAGCCCTAGCCGAAGCAGGAGTCCTTCCCGATGA

Protein sequence

MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQDAIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAFSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRSPVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKSPVRRDASKSPKRRAASKSPKRRAASKSPKRRGVSRSPSRSRSPSR

Homology

[Close]

BLAST of Sed0001749 vs. NCBI nr
Match: XP_038898762.1 (serine/arginine-rich-splicing factor SR34-like isoform X1 [Benincasa hispida])

HSP 1 Score: 497.7 bits (1280), Expect = 8.3e-137
Identity = 278/312 (89.10%), Postives = 291/312 (93.27%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AIRGRDGYDFDGHRLRVELAHGGR  GHSSS+DRY+SHG SR GGRG SRR+DYRVL++G
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGR--GHSSSSDRYSSHGGSR-GGRGVSRRSDYRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SR+YVRVREYDSKRD SRSPSRGRS+SRGRSYSRSRSRGRS SKSHSRSKSPK KSSQRS
Sbjct: 181 SRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNR+KRTSKSPKRRDASKSP R  +   
Sbjct: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNREKRTSKSPKRRDASKSPSRSRSRSR 300

Query: 301 PVRRDASKSPKR 313
              +  SKSP R
Sbjct: 301 SRSKSKSKSPSR 309

[Close]

BLAST of Sed0001749 vs. NCBI nr
Match: XP_004136028.1 (serine/arginine-rich-splicing factor SR34 isoform X1 [Cucumis sativus] >KAE8646341.1 hypothetical protein Csa_015721 [Cucumis sativus])

HSP 1 Score: 496.1 bits (1276), Expect = 2.4e-136
Identity = 277/312 (88.78%), Postives = 289/312 (92.63%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AIRGRDGYDFDGHRLRVELAHGGR  GHSSSNDRY+SHG SR GGRG SRR+DYRVL++G
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGR--GHSSSNDRYSSHGGSR-GGRGVSRRSDYRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SR+YVRVREYDSKRD SRSPSRGRS+SRGRSYSRSRSRGRS SKSHSRSKSPK K SQRS
Sbjct: 181 SRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKPSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASP RSRSKSSSLSGSRSRSRSPVPNR+KRTSKSPKRRDASKSP R  +   
Sbjct: 241 PVKSRSRSASPPRSRSKSSSLSGSRSRSRSPVPNREKRTSKSPKRRDASKSPSRSRSRSR 300

Query: 301 PVRRDASKSPKR 313
              +  SKSP R
Sbjct: 301 SKSKSKSKSPSR 309

[Close]

BLAST of Sed0001749 vs. NCBI nr
Match: XP_022148198.1 (serine/arginine-rich-splicing factor SR34-like isoform X1 [Momordica charantia])

HSP 1 Score: 495.4 bits (1274), Expect = 4.1e-136
Identity = 277/310 (89.35%), Postives = 288/310 (92.90%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AIRGRDGYDFDGHRLRVELAHGGR  GHSSS+DRY+SHG SR GGRG SRR+DYRVL++G
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGR--GHSSSSDRYSSHGGSR-GGRGVSRRSDYRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SRSYVRVREYDSKRD SRSPSRGRSHSRGRSYSRSRSRGRS SKS SRSKSPK KSSQRS
Sbjct: 181 SRSYVRVREYDSKRDLSRSPSRGRSHSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASPARSRSKSSSLSGSRSRSRSP+PNR KRTSKSPKRRDASKSP R  +   
Sbjct: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPLPNRGKRTSKSPKRRDASKSPSRSKSRSR 300

Query: 301 PVRRDASKSP 311
              +  SKSP
Sbjct: 301 SRSKSKSKSP 307

[Close]

BLAST of Sed0001749 vs. NCBI nr
Match: XP_008451568.1 (PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo])

HSP 1 Score: 495.0 bits (1273), Expect = 5.4e-136
Identity = 281/321 (87.54%), Postives = 296/321 (92.21%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AIRGRDGYDFDGHRLRVELAHGGR  GHSSS+DRY+SHG SR GGRG SRR+DYRVL++G
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGR--GHSSSSDRYSSHGGSR-GGRGVSRRSDYRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SR+YVRVREYDSKRD SRSPSRGRS+SRGRSYSRSRSRGRS SKSHSRSKSPK KSSQRS
Sbjct: 181 SRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNR+KRTSKSPKRRDASKSP     S+S
Sbjct: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNREKRTSKSPKRRDASKSP-----SRS 300

Query: 301 PVRRDASKSPKRRAASKSPKR 322
             R  +    K ++ SKSP R
Sbjct: 301 RSRSRSRSRSKSKSKSKSPSR 313

[Close]

BLAST of Sed0001749 vs. NCBI nr
Match: XP_022953714.1 (serine/arginine-rich-splicing factor SR34-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 492.7 bits (1267), Expect = 2.7e-135
Identity = 275/303 (90.76%), Postives = 288/303 (95.05%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AI GRDGYDFDGHRLRVELAHGGR  GHSSS+DRY+SHGSSR GGRG SRR+D+RVL++G
Sbjct: 61  AISGRDGYDFDGHRLRVELAHGGR--GHSSSSDRYSSHGSSR-GGRGVSRRSDFRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SRSYVRVREYDSKRD S+SPSRGRS+SRGRSYSRSRSRGRS SKS SRSKSPKGKSSQRS
Sbjct: 181 SRSYVRVREYDSKRDSSKSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKGKSSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASPARSRSKSSSLSGSRSRSRSP PNR+KRTSKSPKRR+ASKSP  R  SKS
Sbjct: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPAPNREKRTSKSPKRREASKSP-SRSKSKS 299

Query: 301 PVR 304
           P R
Sbjct: 301 PSR 299

[Close]

BLAST of Sed0001749 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.6e-98
Identity = 210/311 (67.52%), Postives = 248/311 (79.74%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSR+SRT+YVGNLPGDIRE+EVEDLF KYG +  +DLKVPPRPPGYAFVEF+D  DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGG--------RGASRRT 120
           AI GRDGYDFDGHRLRVELAHGGR    SS + R + +G  RGGG        RG SRR+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR---RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRS 120

Query: 121 DYRVLISGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLD 180
           ++RVL++GLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT ++DMKYA+KKLD
Sbjct: 121 EFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLD 180

Query: 181 DSEFRNAFSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSP 240
           D+EFRNAFS  YVRVREYDS++D SRSPSRGRS+S+ RS SR RS  RS S+S SRS+SP
Sbjct: 181 DTEFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSP 240

Query: 241 KGKSSQRSPVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSP 300
           K KSS+RSP KS SRS  P RS+S+S S   SRSRSRSP+P+  K  SKSP +   +KSP
Sbjct: 241 KAKSSRRSPAKSTSRSPGP-RSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSP 300

Query: 301 VRRDASKSPVR 304
           +    ++SP R
Sbjct: 301 IH---TRSPSR 303

[Close]

BLAST of Sed0001749 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.0e-89
Identity = 190/268 (70.90%), Postives = 214/268 (79.85%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSR+SRTIYVGNLPGDIRE+EVEDLF KYG +  +DLK+PPRPPGYAFVEFED  DA D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGG------RGASRRTDY 120
           AI GRDGYDFDGH LRVELAHGGR   H +           RGGG      RG SRR++Y
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVLISGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDS 180
           RV++SGLPSSASWQDLKDHMR+ G+VCFSQVFRDG GTTGIVDYT+++DMKYA   LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFRNAFSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKG 240
           EFRNAFS  YVRVREYDS+RD SRSPSRGRS+S+ RS  RS SR RS S+S S+S+SPK 
Sbjct: 181 EFRNAFSHEYVRVREYDSRRD-SRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 241 KSSQRSPVKSRSRSASPARSRSKSSSLS 263
           KS +RSP KS SRS   +RSRSKS SLS
Sbjct: 241 KSLRRSPAKSTSRSPR-SRSRSKSRSLS 263

[Close]

BLAST of Sed0001749 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 3.9e-81
Identity = 179/296 (60.47%), Postives = 218/296 (73.65%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MS R SR+IYVGNLPGDIRE E+ED+FYKYGRI  ++LKVPPRPP Y FVEFE   DA+D
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGR--------GASRRT 120
           AI+GRDGY+ DG RLRVELAHGGRG   S     Y   GS  GGG         G SR +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLISGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLD 180
           ++RV++ GLPSSASWQDLKDHMR+AGDVCF++V RD  GT G+VDYTN+DDMKYAI+KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSP 240
           D+EFRN ++R ++RV++Y+S R RSRSPSR RS SR RS SR R R  S S+S SRSKSP
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 K---GKSSQRSPVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKR 286
           +    KS +RS  +S S+S SP+  + KS   + SRS+SRS   +R +  SKSP +
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRS--RSRSRSPSKSPPK 294

[Close]

BLAST of Sed0001749 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.8e-79
Identity = 184/273 (67.40%), Postives = 208/273 (76.19%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSR +RTIYVGNLPGDIR+ EVEDLFYKYG I  +DLK+PPRPPGYAFVEFEDP DA D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AI GRDGYDFDG RLRVE+AHGGR    S S DRY+   SS    R  SRR+DYRVL++G
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGR--RFSPSVDRYS---SSYSASRAPSRRSDYRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LP SASWQDLKDHMR+AGDVCFS+VF D  G +G+VDY+N+DDMKYAI+KLD +EFRNAF
Sbjct: 121 LPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNS-KSHSRSKSPKGKSSQR 240
           S +Y+RVREY+S R  SRSP   +S+      SRSRSRG S S  S SRS SP    S R
Sbjct: 181 SSAYIRVREYES-RSVSRSPDDSKSYR-----SRSRSRGPSCSYSSKSRSVSPARSISPR 240

Query: 241 SPVKSRSRSASPARSRSKSSSLSGSRSRSRSPV 273
           S   SRSRS   + SRS+S S S SRSRS SPV
Sbjct: 241 SRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPV 262

[Close]

BLAST of Sed0001749 vs. ExPASy Swiss-Prot
Match: Q7SXP4 (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 6.3e-55
Identity = 138/251 (54.98%), Postives = 166/251 (66.14%), Query Frame = 0


Query: 9   IYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQDAIRGRDGY 68
           IYVGNLP DIR K+VED+FYKYG I  +DLK     P +AFVEFEDP DA+DA+  RDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 69  DFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGA--------SRRTDYRVLISG 128
           D+DG+RLRVE    GRG G           G   GGG GA        SRR++YRV++SG
Sbjct: 77  DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136

Query: 129 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFR-NA 188
           LP S SWQDLKDHMR AGDVC++ VFRDG   TG+V++   +DM YA++KLD+++FR + 
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHE 196

Query: 189 FSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQR 248
              +Y+RV     K D  RSPS GRS SR R  SRSRSR RSN++S S S      S Q 
Sbjct: 197 GETAYIRV-----KVDGPRSPSYGRSRSRSR--SRSRSRSRSNNRSRSYSPRRSRGSPQY 256

Query: 249 SPVKSRSRSAS 251
           SP  SRSRS S
Sbjct: 257 SPRHSRSRSRS 257

[Close]

BLAST of Sed0001749 vs. ExPASy TrEMBL
Match: A0A6J1D3F5 (serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016926 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 2.0e-136
Identity = 277/310 (89.35%), Postives = 288/310 (92.90%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AIRGRDGYDFDGHRLRVELAHGGR  GHSSS+DRY+SHG SR GGRG SRR+DYRVL++G
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGR--GHSSSSDRYSSHGGSR-GGRGVSRRSDYRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SRSYVRVREYDSKRD SRSPSRGRSHSRGRSYSRSRSRGRS SKS SRSKSPK KSSQRS
Sbjct: 181 SRSYVRVREYDSKRDLSRSPSRGRSHSRGRSYSRSRSRGRSRSKSRSRSKSPKAKSSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASPARSRSKSSSLSGSRSRSRSP+PNR KRTSKSPKRRDASKSP R  +   
Sbjct: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPLPNRGKRTSKSPKRRDASKSPSRSKSRSR 300

Query: 301 PVRRDASKSP 311
              +  SKSP
Sbjct: 301 SRSKSKSKSP 307

[Close]

BLAST of Sed0001749 vs. ExPASy TrEMBL
Match: A0A1S3BR66 (serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492811 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.6e-136
Identity = 281/321 (87.54%), Postives = 296/321 (92.21%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AIRGRDGYDFDGHRLRVELAHGGR  GHSSS+DRY+SHG SR GGRG SRR+DYRVL++G
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGR--GHSSSSDRYSSHGGSR-GGRGVSRRSDYRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SR+YVRVREYDSKRD SRSPSRGRS+SRGRSYSRSRSRGRS SKSHSRSKSPK KSSQRS
Sbjct: 181 SRAYVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGRSRSKSHSRSKSPKAKSSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNR+KRTSKSPKRRDASKSP     S+S
Sbjct: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNREKRTSKSPKRRDASKSP-----SRS 300

Query: 301 PVRRDASKSPKRRAASKSPKR 322
             R  +    K ++ SKSP R
Sbjct: 301 RSRSRSRSRSKSKSKSKSPSR 313

[Close]

BLAST of Sed0001749 vs. ExPASy TrEMBL
Match: A0A6J1GQG9 (serine/arginine-rich-splicing factor SR34-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456162 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 1.3e-135
Identity = 275/303 (90.76%), Postives = 288/303 (95.05%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AI GRDGYDFDGHRLRVELAHGGR  GHSSS+DRY+SHGSSR GGRG SRR+D+RVL++G
Sbjct: 61  AISGRDGYDFDGHRLRVELAHGGR--GHSSSSDRYSSHGSSR-GGRGVSRRSDFRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SRSYVRVREYDSKRD S+SPSRGRS+SRGRSYSRSRSRGRS SKS SRSKSPKGKSSQRS
Sbjct: 181 SRSYVRVREYDSKRDSSKSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKGKSSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASPARSRSKSSSLSGSRSRSRSP PNR+KRTSKSPKRR+ASKSP  R  SKS
Sbjct: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPAPNREKRTSKSPKRREASKSP-SRSKSKS 299

Query: 301 PVR 304
           P R
Sbjct: 301 PSR 299

[Close]

BLAST of Sed0001749 vs. ExPASy TrEMBL
Match: A0A6J1JQ69 (serine/arginine-rich-splicing factor SR34-like OS=Cucurbita maxima OX=3661 GN=LOC111487951 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 2.2e-135
Identity = 274/303 (90.43%), Postives = 288/303 (95.05%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AIRGRDGYDFDGHRLRVELAHGGR  GHSSS+DRY+SHGSSR GGRG SRR+D+RVL++G
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGR--GHSSSSDRYSSHGSSR-GGRGVSRRSDFRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SRSYVRVREYDSKRD S+SPSRGRS+SRGRSYSRS SRGRS SKS SRSKSPKGKSSQRS
Sbjct: 181 SRSYVRVREYDSKRDSSKSPSRGRSYSRGRSYSRSHSRGRSRSKSRSRSKSPKGKSSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASPARSRSKSSSLSGSRS+SRSP PNR+KRTSKSPKRR+ASKSP  R  SKS
Sbjct: 241 PVKSRSRSASPARSRSKSSSLSGSRSKSRSPAPNREKRTSKSPKRREASKSP-SRSKSKS 299

Query: 301 PVR 304
           P R
Sbjct: 301 PSR 299

[Close]

BLAST of Sed0001749 vs. ExPASy TrEMBL
Match: A0A6J1GP36 (serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456162 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 2.2e-135
Identity = 275/312 (88.14%), Postives = 290/312 (92.95%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSRASRT+YVGNLPGDIREKEVEDLFYKYGRIAH+DLKVPPRPPGYAFVEFED EDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGRGASRRTDYRVLISG 120
           AI GRDGYDFDGHRLRVELAHGGR  GHSSS+DRY+SHGSSR GGRG SRR+D+RVL++G
Sbjct: 61  AISGRDGYDFDGHRLRVELAHGGR--GHSSSSDRYSSHGSSR-GGRGVSRRSDFRVLVTG 120

Query: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAF 180
           LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN+DDMKYAIKKLDDSEFRNAF
Sbjct: 121 LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAF 180

Query: 181 SRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKGKSSQRS 240
           SRSYVRVREYDSKRD S+SPSRGRS+SRGRSYSRSRSRGRS SKS SRSKSPKGKSSQRS
Sbjct: 181 SRSYVRVREYDSKRDSSKSPSRGRSYSRGRSYSRSRSRGRSRSKSRSRSKSPKGKSSQRS 240

Query: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSPVRRDASKS 300
           PVKSRSRSASPARSRSKSSSLSGSRSRSRSP PNR+KRTSKSPKRR+ASKSP R  +   
Sbjct: 241 PVKSRSRSASPARSRSKSSSLSGSRSRSRSPAPNREKRTSKSPKRREASKSPSRSRSRSR 300

Query: 301 PVRRDASKSPKR 313
              +  SKSP R
Sbjct: 301 SRSKSKSKSPSR 309

[Close]

BLAST of Sed0001749 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 360.9 bits (925), Expect = 1.1e-99
Identity = 210/311 (67.52%), Postives = 248/311 (79.74%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSR+SRT+YVGNLPGDIRE+EVEDLF KYG +  +DLKVPPRPPGYAFVEF+D  DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGG--------RGASRRT 120
           AI GRDGYDFDGHRLRVELAHGGR    SS + R + +G  RGGG        RG SRR+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR---RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRS 120

Query: 121 DYRVLISGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLD 180
           ++RVL++GLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT ++DMKYA+KKLD
Sbjct: 121 EFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLD 180

Query: 181 DSEFRNAFSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSP 240
           D+EFRNAFS  YVRVREYDS++D SRSPSRGRS+S+ RS SR RS  RS S+S SRS+SP
Sbjct: 181 DTEFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSP 240

Query: 241 KGKSSQRSPVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSP 300
           K KSS+RSP KS SRS  P RS+S+S S   SRSRSRSP+P+  K  SKSP +   +KSP
Sbjct: 241 KAKSSRRSPAKSTSRSPGP-RSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSP 300

Query: 301 VRRDASKSPVR 304
           +    ++SP R
Sbjct: 301 IH---TRSPSR 303

[Close]

BLAST of Sed0001749 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 360.9 bits (925), Expect = 1.1e-99
Identity = 210/311 (67.52%), Postives = 248/311 (79.74%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSR+SRT+YVGNLPGDIRE+EVEDLF KYG +  +DLKVPPRPPGYAFVEF+D  DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGG--------RGASRRT 120
           AI GRDGYDFDGHRLRVELAHGGR    SS + R + +G  RGGG        RG SRR+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR---RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRS 120

Query: 121 DYRVLISGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLD 180
           ++RVL++GLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT ++DMKYA+KKLD
Sbjct: 121 EFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLD 180

Query: 181 DSEFRNAFSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSP 240
           D+EFRNAFS  YVRVREYDS++D SRSPSRGRS+S+ RS SR RS  RS S+S SRS+SP
Sbjct: 181 DTEFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSP 240

Query: 241 KGKSSQRSPVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKRRDASKSP 300
           K KSS+RSP KS SRS  P RS+S+S S   SRSRSRSP+P+  K  SKSP +   +KSP
Sbjct: 241 KAKSSRRSPAKSTSRSPGP-RSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSP 300

Query: 301 VRRDASKSPVR 304
           +    ++SP R
Sbjct: 301 IH---TRSPSR 303

[Close]

BLAST of Sed0001749 vs. TAIR 10
Match: AT1G02840.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 343.2 bits (879), Expect = 2.4e-94
Identity = 193/283 (68.20%), Postives = 223/283 (78.80%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSR+SRT+YVGNLPGDIRE+EVEDLF KYG +  +DLKVPPRPPGYAFVEF+D  DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGG--------RGASRRT 120
           AI GRDGYDFDGHRLRVELAHGGR    SS + R + +G  RGGG        RG SRR+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR---RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRS 120

Query: 121 DYRVLISGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLD 180
           ++RVL++GLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT ++DMKYA+KKLD
Sbjct: 121 EFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLD 180

Query: 181 DSEFRNAFSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSP 240
           D+EFRNAFS  YVRVREYDS++D SRSPSRGRS+S+ RS SR RS  RS S+S SRS+SP
Sbjct: 181 DTEFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSP 240

Query: 241 KGKSSQRSPVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNR 276
           K KSS+RSP KS SRS  P             RS+SRSP P R
Sbjct: 241 KAKSSRRSPAKSTSRSPGP-------------RSKSRSPSPRR 266

[Close]

BLAST of Sed0001749 vs. TAIR 10
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 331.6 bits (849), Expect = 7.3e-91
Identity = 190/268 (70.90%), Postives = 214/268 (79.85%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MSSR+SRTIYVGNLPGDIRE+EVEDLF KYG +  +DLK+PPRPPGYAFVEFED  DA D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGG------RGASRRTDY 120
           AI GRDGYDFDGH LRVELAHGGR   H +           RGGG      RG SRR++Y
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVLISGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDS 180
           RV++SGLPSSASWQDLKDHMR+ G+VCFSQVFRDG GTTGIVDYT+++DMKYA   LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFRNAFSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSPKG 240
           EFRNAFS  YVRVREYDS+RD SRSPSRGRS+S+ RS  RS SR RS S+S S+S+SPK 
Sbjct: 181 EFRNAFSHEYVRVREYDSRRD-SRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 241 KSSQRSPVKSRSRSASPARSRSKSSSLS 263
           KS +RSP KS SRS   +RSRSKS SLS
Sbjct: 241 KSLRRSPAKSTSRSPR-SRSRSKSRSLS 263

[Close]

BLAST of Sed0001749 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 303.1 bits (775), Expect = 2.8e-82
Identity = 179/296 (60.47%), Postives = 218/296 (73.65%), Query Frame = 0


Query: 1   MSSRASRTIYVGNLPGDIREKEVEDLFYKYGRIAHMDLKVPPRPPGYAFVEFEDPEDAQD 60
           MS R SR+IYVGNLPGDIRE E+ED+FYKYGRI  ++LKVPPRPP Y FVEFE   DA+D
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHGGRGHGHSSSNDRYNSHGSSRGGGR--------GASRRT 120
           AI+GRDGY+ DG RLRVELAHGGRG   S     Y   GS  GGG         G SR +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLISGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLD 180
           ++RV++ GLPSSASWQDLKDHMR+AGDVCF++V RD  GT G+VDYTN+DDMKYAI+KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRSYVRVREYDSKRDRSRSPSRGRSHSRGRSYSRSRSRGRSNSKSHSRSKSP 240
           D+EFRN ++R ++RV++Y+S R RSRSPSR RS SR RS SR R R  S S+S SRSKSP
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 241 K---GKSSQRSPVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNRDKRTSKSPKR 286
           +    KS +RS  +S S+S SP+  + KS   + SRS+SRS   +R +  SKSP +
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRS--RSRSRSPSKSPPK 294

The following BLAST results are available for this feature:

BLAST of Sed0001749 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898762.1	8.3e-137	89.10	serine/arginine-rich-splicing factor SR34-like isoform X1 [Benincasa hispida]	[more]
XP_004136028.1	2.4e-136	88.78	serine/arginine-rich-splicing factor SR34 isoform X1 [Cucumis sativus] >KAE86463...	[more]
XP_022148198.1	4.1e-136	89.35	serine/arginine-rich-splicing factor SR34-like isoform X1 [Momordica charantia]	[more]
XP_008451568.1	5.4e-136	87.54	PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis me...	[more]
XP_022953714.1	2.7e-135	90.76	serine/arginine-rich-splicing factor SR34-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Sed0001749 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22315	1.6e-98	67.52	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	1.0e-89	70.90	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
A2RVS6	3.9e-81	60.47	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9XFR5	2.8e-79	67.40	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
Q7SXP4	6.3e-55	54.98	Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV...	[more]

BLAST of Sed0001749 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3F5	2.0e-136	89.35	serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Momordica charantia...	[more]
A0A1S3BR66	2.6e-136	87.54	serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo OX=365...	[more]
A0A6J1GQG9	1.3e-135	90.76	serine/arginine-rich-splicing factor SR34-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1JQ69	2.2e-135	90.43	serine/arginine-rich-splicing factor SR34-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GP36	2.2e-135	88.14	serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucurbita moschata ...	[more]

BLAST of Sed0001749 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02840.1	1.1e-99	67.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.3	1.1e-99	67.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.2	2.4e-94	68.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G02430.2	7.3e-91	70.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G49430.1	2.8e-82	60.47	SER/ARG-rich protein 34A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 115..186 e-value: 4.3E-7 score: 39.6 coord: 8..78 e-value: 5.2E-23 score: 92.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 116..178 e-value: 1.5E-10 score: 40.8 coord: 9..76 e-value: 5.1E-18 score: 64.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 114..192 score: 9.950859
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 18.80261
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 114..191 e-value: 1.0E-22 score: 81.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..113 e-value: 1.5E-28 score: 101.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..103
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 2..257
None	No IPR available	PANTHER	PTHR23147:SF198	PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN	coord: 2..257
None	No IPR available	CDD	cd12599	RRM1_SF2_plant_like	coord: 8..79 e-value: 7.89444E-46 score: 146.836
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 114..189 e-value: 1.93134E-47 score: 151.12
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001749.1	Sed0001749.1	mRNA
Sed0001749.2	Sed0001749.2	mRNA
Sed0001749.3	Sed0001749.3	mRNA
Sed0001749.4	Sed0001749.4	mRNA
Sed0001749.5	Sed0001749.5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding