Sed0001744 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTAGAGTGGGCAAGATAGTAACTTCACATTGTAATAGATAAAGTAGATATTAGATAAGGTTCTCCCACTCTGCTTCTAGATTTTGGTGATTAATTTAGTTAGCCACTCCCCCCATTTTTGCTCTGCTCAAATTCTGCAATCACAATCACAAAACCAATTGCCCAAATGTTCAGCACTGTGAATCTTGTTATGGGCTCTTCTTCACCCGCCATGGTTACTCCATCACAGATTTCAGCCATGAAATCTCTTGCCAGCTCCAGAATCGGTCACCACAACCCCACCGGAACCGTTTCATTGCCTTTCCGTTTCTCTTCTGCCTCCGCCTCCACCGCCGGCGTCTCCTCTTCACCGCGTTTTTTTCCGTTCAGCCCAGCATTCGCCGCCGTTAACTCCGATCCGGCCGACAAGGTAACCGTTAGCTCTCCGTTCCGCATTTCGCCTCTCTACAATTTCTTAACTCCGACGATTATACATCGTTTTTCGAATTTAGGTTTCAATTGATCGATCTATCGAGAGTTAGGGTTTGCAAAATTGCTGACGCTCGTGGAAATCGAAGCGAGATTTTGTGAAATTTTAATAGCGTTGTTGATCCTAATTTGTCTAGTTTGTGTGCGTTTTCCCTATTTCGTTCTGGAAATCTGAGATTGTGTAAGGTGAAGGTCACTGGATTTTTATGCATCGTTTCAATGCAGCAAGAATCGAACAAGTATTACTTCCTCGTTGCAAATGCGAAGTTCATGCTCGACGACGAGGAGCATTTCCAGGAGCAGCTATTCGAGCGGCTTCGCTACTATGGCGAGCGGAACAAGGAGCAGGACTTTTGGTTAGTCATTGAACCTAAATTCTTGGAGAAGTTTCCTAATGTCACCAAGAGATTGCAGAGACCTGCCGTTGCACTTGTTTCAACTAATAGTACTTGGATTAAGTAAGTTACCTGCTTTCAAATTGCATTATTGATTTTCTTTACCATATTACATTATAGATTAGGATTGGAGATTCGAAACTACAACCATACGAGTAGAGACAATACACTAATCTCTAATTATTTGAGTTTTGCTTATTCCTATTAGCATCGTTTGCATTGGTATATGCAGTTCTTGCAGCTCATTGAGGCCTAATTCATTGTTCGCTCGCTTTTCGCTTATATATAAGACTCATATTTGTTCGTAAGGGGTGGCACAATGGTTGAAGACTTGGGCTTTGAGGGTATGCTCTCCTCCCAGGTTCGACACTCTGCTGTGACATTACTCCTTCGATGTCTCCCGGTGCCTAGCCTAGGAACGGGCGTGGTTACCCTTCTTTCAAGAAAAATATCAGACCCATATTTGAGAGGAGACAATAATATGATGTGTTTAGATACAATAAGAAAGAGTAGAAAATATGAGTGTTCTCTATATATATGAACATAGCACTCATATTTAAGAGGAGATAGTAATGTGATATGTTTAGATACAATAAGAAAGTGAATATGAAAAAGTAGGAAATATGAGTGCTTTTATATATATGAATAATAGTACTCATACTTAAGATATAGTAATGTGATGTGTTTAGTCACAATAAAAAAAAGGGATGTGAAAAACTAGAAAAATAAAATGCTTGATATTGCACACAATTGGGCAGCTAACAAGTTTTAAGGACAATTAGAGGATTAAATGAGTCAACAGTTGCTTGTCAAAAAACAAAACAAAACAAAAAATGAGTCAACAACTGCAGTCCATCTTAAGTTTCCAGTGGTTTATTATTTGCATATGCTGACAGAATAACATTTACTCCATAAGTTCTTGGTTTCATTTTTTTTCTTTTTCTTTAGAATTCAAATTTATCTTGTTGTGAAGCTGTTTAGCTACAGTAACTGAAACTCAGCTCTTCCCATGATTACTCCATGTCAAATGCCTCATATTGATGTATGATTTTATACAATCACTGTTAAATGGGCTCGAAACTTGAACATTCTTGCATCTCCTGGAACAATGTCTTTGCTTGACAGCCTATTTTTGTCCCCCTTTTCTTGTTGATATGGGCAGGTTCATGAAGCTCAGACTGGACCGAGTCTTAGCCGAAAGTTTTGAAGCTGATAGCTTAGAAGAAGCATTGGCTTCTAACCCGACCGACATCGAGTTTAAGAAGCCTGAAAAATGGGTAGCTCCCTACCCCAAGTATGAATCTGGATGGTGGGAAACTTTCTTGCCGCCAGTGGCAAAAGCAGAAGCAAAAGTGTAAACTGTGTGTAAGTTTATTTCTTTAGTAGGCTCTTTTACCATCCAAGTATGAATTTTGATGGTGTGAGGATTTGGCAAAACATTTGTAGTTGAAGGCAGTTTTTGGTAATTCTGATGTGGTAAAAGTAAATCGTTATTTTAAGCTTTATTGAAATATACTAGGGCTTTTACAAGGGTAACCTAGTGGTCACCGGTTAAAATGGGCTTAAATAACCAAGAGATTGCGAGTTCAATTCAT GTAGAGTGGGCAAGATAGTAACTTCACATTGTAATAGATAAAGTAGATATTAGATAAGGTTCTCCCACTCTGCTTCTAGATTTTGGTGATTAATTTAGTTAGCCACTCCCCCCATTTTTGCTCTGCTCAAATTCTGCAATCACAATCACAAAACCAATTGCCCAAATGTTCAGCACTGTGAATCTTGTTATGGGCTCTTCTTCACCCGCCATGGTTACTCCATCACAGATTTCAGCCATGAAATCTCTTGCCAGCTCCAGAATCGGTCACCACAACCCCACCGGAACCGTTTCATTGCCTTTCCGTTTCTCTTCTGCCTCCGCCTCCACCGCCGGCGTCTCCTCTTCACCGCGTTTTTTTCCGTTCAGCCCAGCATTCGCCGCCGTTAACTCCGATCCGGCCGACAAGCAAGAATCGAACAAGTATTACTTCCTCGTTGCAAATGCGAAGTTCATGCTCGACGACGAGGAGCATTTCCAGGAGCAGCTATTCGAGCGGCTTCGCTACTATGGCGAGCGGAACAAGGAGCAGGACTTTTGGTTAGTCATTGAACCTAAATTCTTGGAGAAGTTTCCTAATGTCACCAAGAGATTGCAGAGACCTGCCGTTGCACTTGTTTCAACTAATAGTACTTGGATTAAGTTCATGAAGCTCAGACTGGACCGAGTCTTAGCCGAAAGTTTTGAAGCTGATAGCTTAGAAGAAGCATTGGCTTCTAACCCGACCGACATCGAGTTTAAGAAGCCTGAAAAATGGGTAGCTCCCTACCCCAAGTATGAATCTGGATGGTGGGAAACTTTCTTGCCGCCAGTGGCAAAAGCAGAAGCAAAAGTGTAAACTGTGTGTAAGTTTATTTCTTTAGTAGGCTCTTTTACCATCCAAGTATGAATTTTGATGGTGTGAGGATTTGGCAAAACATTTGTAGTTGAAGGCAGTTTTTGGTAATTCTGATGTGGTAAAAGTAAATCGTTATTTTAAGCTTTATTGAAATATACTAGGGCTTTTACAAGGGTAACCTAGTGGTCACCGGTTAAAATGGGCTTAAATAACCAAGAGATTGCGAGTTCAATTCAT ATGTTCAGCACTGTGAATCTTGTTATGGGCTCTTCTTCACCCGCCATGGTTACTCCATCACAGATTTCAGCCATGAAATCTCTTGCCAGCTCCAGAATCGGTCACCACAACCCCACCGGAACCGTTTCATTGCCTTTCCGTTTCTCTTCTGCCTCCGCCTCCACCGCCGGCGTCTCCTCTTCACCGCGTTTTTTTCCGTTCAGCCCAGCATTCGCCGCCGTTAACTCCGATCCGGCCGACAAGCAAGAATCGAACAAGTATTACTTCCTCGTTGCAAATGCGAAGTTCATGCTCGACGACGAGGAGCATTTCCAGGAGCAGCTATTCGAGCGGCTTCGCTACTATGGCGAGCGGAACAAGGAGCAGGACTTTTGGTTAGTCATTGAACCTAAATTCTTGGAGAAGTTTCCTAATGTCACCAAGAGATTGCAGAGACCTGCCGTTGCACTTGTTTCAACTAATAGTACTTGGATTAAGTTCATGAAGCTCAGACTGGACCGAGTCTTAGCCGAAAGTTTTGAAGCTGATAGCTTAGAAGAAGCATTGGCTTCTAACCCGACCGACATCGAGTTTAAGAAGCCTGAAAAATGGGTAGCTCCCTACCCCAAGTATGAATCTGGATGGTGGGAAACTTTCTTGCCGCCAGTGGCAAAAGCAGAAGCAAAAGTGTAA MFSTVNLVMGSSSPAMVTPSQISAMKSLASSRIGHHNPTGTVSLPFRFSSASASTAGVSSSPRFFPFSPAFAAVNSDPADKQESNKYYFLVANAKFMLDDEEHFQEQLFERLRYYGERNKEQDFWLVIEPKFLEKFPNVTKRLQRPAVALVSTNSTWIKFMKLRLDRVLAESFEADSLEEALASNPTDIEFKKPEKWVAPYPKYESGWWETFLPPVAKAEAKV Homology
BLAST of Sed0001744 vs. NCBI nr
Match: XP_022149576.1 (uncharacterized protein LOC111017973 [Momordica charantia]) HSP 1 Score: 339.0 bits (868), Expect = 3.2e-89 Identity = 180/233 (77.25%), Postives = 197/233 (84.55%), Query Frame = 0
BLAST of Sed0001744 vs. NCBI nr
Match: XP_038900405.1 (uncharacterized protein LOC120087636 [Benincasa hispida]) HSP 1 Score: 325.1 bits (832), Expect = 4.8e-85 Identity = 170/226 (75.22%), Postives = 190/226 (84.07%), Query Frame = 0
BLAST of Sed0001744 vs. NCBI nr
Match: XP_022944632.1 (uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo] >XP_023512537.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 323.2 bits (827), Expect = 1.8e-84 Identity = 175/232 (75.43%), Postives = 192/232 (82.76%), Query Frame = 0
BLAST of Sed0001744 vs. NCBI nr
Match: XP_022986936.1 (uncharacterized protein LOC111484525 [Cucurbita maxima]) HSP 1 Score: 322.0 bits (824), Expect = 4.0e-84 Identity = 174/233 (74.68%), Postives = 191/233 (81.97%), Query Frame = 0
BLAST of Sed0001744 vs. NCBI nr
Match: KAG7010462.1 (putative protein ycf54 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 320.1 bits (819), Expect = 1.5e-83 Identity = 173/232 (74.57%), Postives = 190/232 (81.90%), Query Frame = 0
BLAST of Sed0001744 vs. ExPASy Swiss-Prot
Match: P72777 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.5e-14 Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 0
BLAST of Sed0001744 vs. ExPASy Swiss-Prot
Match: P51204 (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 6.2e-11 Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 0
BLAST of Sed0001744 vs. ExPASy Swiss-Prot
Match: Q1XDT3 (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 5.8e-09 Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 0
BLAST of Sed0001744 vs. ExPASy Swiss-Prot
Match: O19890 (Uncharacterized protein ycf54 OS=Cyanidium caldarium OX=2771 GN=ycf54 PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.7e-06 Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 0
BLAST of Sed0001744 vs. ExPASy TrEMBL
Match: A0A6J1D8T3 (uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017973 PE=4 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89 Identity = 180/233 (77.25%), Postives = 197/233 (84.55%), Query Frame = 0
BLAST of Sed0001744 vs. ExPASy TrEMBL
Match: A0A6J1FW50 (uncharacterized protein LOC111449035 OS=Cucurbita moschata OX=3662 GN=LOC111449035 PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 8.7e-85 Identity = 175/232 (75.43%), Postives = 192/232 (82.76%), Query Frame = 0
BLAST of Sed0001744 vs. ExPASy TrEMBL
Match: A0A6J1JCP0 (uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525 PE=4 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 1.9e-84 Identity = 174/233 (74.68%), Postives = 191/233 (81.97%), Query Frame = 0
BLAST of Sed0001744 vs. ExPASy TrEMBL
Match: A0A6J1G6K2 (uncharacterized protein LOC111451246 OS=Cucurbita moschata OX=3662 GN=LOC111451246 PE=4 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 1.6e-83 Identity = 168/227 (74.01%), Postives = 189/227 (83.26%), Query Frame = 0
BLAST of Sed0001744 vs. ExPASy TrEMBL
Match: A0A0A0KB63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133820 PE=4 SV=1) HSP 1 Score: 310.5 bits (794), Expect = 5.9e-81 Identity = 162/226 (71.68%), Postives = 184/226 (81.42%), Query Frame = 0
BLAST of Sed0001744 vs. TAIR 10
Match: AT5G58250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 229.6 bits (584), Expect = 2.5e-60 Identity = 120/186 (64.52%), Postives = 140/186 (75.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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