Sed0001719 (gene) Chayote v1

Overview
NameSed0001719
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 23680048 .. 23680212 (+)
RNA-Seq ExpressionSed0001719
SyntenySed0001719
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCCATCTCCTCCATCTTGTCTTTTCTCTTCTCTTCTCTATGCTTTTTGTCTGATCCTTGGCCTGAGGCACTCTACGGTTTCCCTCTCGAAAGCTCGCCGCAGCTTTCGCTTATCGGGTATGCTGGTTTTCACACAGATATTTCTTCAATCATGTTATAA

mRNA sequence

ATGGCACCCATCTCCTCCATCTTGTCTTTTCTCTTCTCTTCTCTATGCTTTTTGTCTGATCCTTGGCCTGAGGCACTCTACGGTTTCCCTCTCGAAAGCTCGCCGCAGCTTTCGCTTATCGGGTATGCTGGTTTTCACACAGATATTTCTTCAATCATGTTATAA

Coding sequence (CDS)

ATGGCACCCATCTCCTCCATCTTGTCTTTTCTCTTCTCTTCTCTATGCTTTTTGTCTGATCCTTGGCCTGAGGCACTCTACGGTTTCCCTCTCGAAAGCTCGCCGCAGCTTTCGCTTATCGGGTATGCTGGTTTTCACACAGATATTTCTTCAATCATGTTATAA

Protein sequence

MAPISSILSFLFSSLCFLSDPWPEALYGFPLESSPQLSLIGYAGFHTDISSIML
Homology
[Close]
BLAST of Sed0001719 vs. NCBI nr
Match: KGN47818.1 (hypothetical protein Csa_004141 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1  MAPISSILSFLFSSLCFLSDPWPEALYGFPLESSPQLSLIGYAGFHTDISSIM 54
          MAPIS+ILSFL SSL FLSDPWPEA YG PLE S QLSLIGYA FHTD + ++
Sbjct: 25 MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGYAIFHTDTAIVL 77

[Close]
BLAST of Sed0001719 vs. NCBI nr
Match: KAA0036462.1 (hypothetical protein E6C27_scaffold147G00310 [Cucumis melo var. makuwa] >TYK00026.1 hypothetical protein E5676_scaffold360G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 8.7e-09
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 1  MAPISSILSFLFSSLCFLSDPWPEALYGFPLESSPQLSLIGY 43
          MAPIS+ILSFL SSL FLSDPWPEA YG PLE S QLSLIG+
Sbjct: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGF 42

[Close]
BLAST of Sed0001719 vs. ExPASy TrEMBL
Match: A0A0A0KE34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405315 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.3e-13
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1  MAPISSILSFLFSSLCFLSDPWPEALYGFPLESSPQLSLIGYAGFHTDISSIM 54
          MAPIS+ILSFL SSL FLSDPWPEA YG PLE S QLSLIGYA FHTD + ++
Sbjct: 25 MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGYAIFHTDTAIVL 77

[Close]
BLAST of Sed0001719 vs. ExPASy TrEMBL
Match: A0A5D3BP26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00710 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.2e-09
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 1  MAPISSILSFLFSSLCFLSDPWPEALYGFPLESSPQLSLIGY 43
          MAPIS+ILSFL SSL FLSDPWPEA YG PLE S QLSLIG+
Sbjct: 1  MAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGF 42

The following BLAST results are available for this feature:
BLAST of Sed0001719 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47818.11.3e-1275.47hypothetical protein Csa_004141 [Cucumis sativus][more]
KAA0036462.18.7e-0980.95hypothetical protein E6C27_scaffold147G00310 [Cucumis melo var. makuwa] >TYK0002... [more]
BLAST of Sed0001719 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0001719 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE346.3e-1375.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405315 PE=4 SV=1[more]
A0A5D3BP264.2e-0980.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Sed0001719 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001719.1Sed0001719.1mRNA