Sed0001707 (gene) Chayote v1

Overview


Name	Sed0001707
Type	gene
Organism	Sechium edule (Chayote v1)
Description	leucine-rich repeat extensin-like protein 6
Location	LG12: 4856384 .. 4857552 (-)
RNA-Seq Expression	Sed0001707
Synteny	Sed0001707

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAATTTAGTCCTTTTACTTTCACCTCATTACAAATTTAACCCCTATTTTCCTCTTAATTAAAAAACAACCCCACAATAATTACCAAAAAACAAAAAACCCACTATTCCCATAAATCCACTAAAAAACTTCACTCACTTCTCTGAAAACAACTCCGTTTCCAATTCTCTCTCTTTCCCACGATGGAAACTGCCATTTCTCTGAAATTTTTCCTCTCTCTCACGGCGGTGCTTCTCACTTTCCCGGCCGGATTTGGGTCTCTTCCGGTGGCCGACCGCCGCACCGCCACCGCCACCACCAAGTACCAAATCGAATGCACAATGTGCTCTGCTTGTGACAACCCCTGCGGCCAGTATTTCTCACCGCCGCCGCCTCCGCCTCCGCCATCGCCTCCTCCGCCCGTCAAATGCCCGCCGCCGCCTTCCCCACCCACCTCCGGCAACTACTACTACTACTCTCCGCCCCCGCCGGCCCAACCCTCTTACACGTACTCCTCCCCGCCTCCGCCACGTGGCATCATCGGCGGCTACTACCAGCCGCCGCCCTACAGTGATTACCCGGCGCCACCGCCGCCGAACCCGATTGTACCGTATTTCCCATTCTATTTTCACACTCCGCCGCCGGGATCATTCTCCGCCGGCGCCGGCCGTTTGACGAGCTCCGTCGCCGGCTCTGTCATTACCGTTGCTCTGTTTACATTTTTACTCGGTTTGTTTTGAATGCAAATAACAGGGGATAGAAAAATTTGGCAATAATGGCGGATTTTGCAGATCTGGGAAATTTGATGGAGCGAAATCTGGAGAGAAATTTGTGAAAAAGGGGTTTTCGATCTTCGAAGAAGATGATCAGAGATTTGCTTTTTGGGGTAAAGAAATTATTTTTCTGATCCTTAATTTCCCCTGAATTTCTCTGTTTTTCTTACTCCATTATGATTAGATTGATCTGTAATCTGCTGATTATATATAAATTATATGTGTTTTTCTTTACATGTATTTTTAATTCAATTTGTTCATGAACAAGTACAATAATTGTATGTATTGAATCTCTTGTTGTTTGAATCTTTCCCATTTCAACTGAATAACTGTGTTGTTGTAGATTGGTTTTTGTATGTTCTTCGGTTGTTCATCAATGGCGGGTCTGTTGAAATTCATGAAAAAATAGTTTCTCGA

mRNA sequence

CCCAATTTAGTCCTTTTACTTTCACCTCATTACAAATTTAACCCCTATTTTCCTCTTAATTAAAAAACAACCCCACAATAATTACCAAAAAACAAAAAACCCACTATTCCCATAAATCCACTAAAAAACTTCACTCACTTCTCTGAAAACAACTCCGTTTCCAATTCTCTCTCTTTCCCACGATGGAAACTGCCATTTCTCTGAAATTTTTCCTCTCTCTCACGGCGGTGCTTCTCACTTTCCCGGCCGGATTTGGGTCTCTTCCGGTGGCCGACCGCCGCACCGCCACCGCCACCACCAAGTACCAAATCGAATGCACAATGTGCTCTGCTTGTGACAACCCCTGCGGCCAGTATTTCTCACCGCCGCCGCCTCCGCCTCCGCCATCGCCTCCTCCGCCCGTCAAATGCCCGCCGCCGCCTTCCCCACCCACCTCCGGCAACTACTACTACTACTCTCCGCCCCCGCCGGCCCAACCCTCTTACACGTACTCCTCCCCGCCTCCGCCACGTGGCATCATCGGCGGCTACTACCAGCCGCCGCCCTACAGTGATTACCCGGCGCCACCGCCGCCGAACCCGATTGTACCGTATTTCCCATTCTATTTTCACACTCCGCCGCCGGGATCATTCTCCGCCGGCGCCGGCCGTTTGACGAGCTCCGTCGCCGGCTCTGTCATTACCGTTGCTCTGTTTACATTTTTACTCGGTTTGTTTTGAATGCAAATAACAGGGGATAGAAAAATTTGGCAATAATGGCGGATTTTGCAGATCTGGGAAATTTGATGGAGCGAAATCTGGAGAGAAATTTGTGAAAAAGGGGTTTTCGATCTTCGAAGAAGATGATCAGAGATTTGCTTTTTGGGGTAAAGAAATTATTTTTCTGATCCTTAATTTCCCCTGAATTTCTCTGTTTTTCTTACTCCATTATGATTAGATTGATCTGTAATCTGCTGATTATATATAAATTATATGTGTTTTTCTTTACATGTATTTTTAATTCAATTTGTTCATGAACAAGTACAATAATTGTATGTATTGAATCTCTTGTTGTTTGAATCTTTCCCATTTCAACTGAATAACTGTGTTGTTGTAGATTGGTTTTTGTATGTTCTTCGGTTGTTCATCAATGGCGGGTCTGTTGAAATTCATGAAAAAATAGTTTCTCGA

Coding sequence (CDS)

ATGGAAACTGCCATTTCTCTGAAATTTTTCCTCTCTCTCACGGCGGTGCTTCTCACTTTCCCGGCCGGATTTGGGTCTCTTCCGGTGGCCGACCGCCGCACCGCCACCGCCACCACCAAGTACCAAATCGAATGCACAATGTGCTCTGCTTGTGACAACCCCTGCGGCCAGTATTTCTCACCGCCGCCGCCTCCGCCTCCGCCATCGCCTCCTCCGCCCGTCAAATGCCCGCCGCCGCCTTCCCCACCCACCTCCGGCAACTACTACTACTACTCTCCGCCCCCGCCGGCCCAACCCTCTTACACGTACTCCTCCCCGCCTCCGCCACGTGGCATCATCGGCGGCTACTACCAGCCGCCGCCCTACAGTGATTACCCGGCGCCACCGCCGCCGAACCCGATTGTACCGTATTTCCCATTCTATTTTCACACTCCGCCGCCGGGATCATTCTCCGCCGGCGCCGGCCGTTTGACGAGCTCCGTCGCCGGCTCTGTCATTACCGTTGCTCTGTTTACATTTTTACTCGGTTTGTTTTGA

Protein sequence

METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFSPPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIGGYYQPPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF

Homology

[Close]

BLAST of Sed0001707 vs. NCBI nr
Match: XP_038906774.1 (leucine-rich repeat extensin-like protein 6 [Benincasa hispida])

HSP 1 Score: 260.8 bits (665), Expect = 8.8e-66
Identity = 143/179 (79.89%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFS 60
           METAISL+FF+SLTAVLL FPAGF SLPVADRR  +A  KYQIECTMCSACDNPCGQY S
Sbjct: 1   METAISLRFFISLTAVLLLFPAGFSSLPVADRR-ISAGAKYQIECTMCSACDNPCGQYLS 60

Query: 61  PPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGII-GGYYQP 120
           PPP      PPPPV CPPPPSPP+SG YYYYSPPPP QP+YTYSSPPPPRGI  GGYYQP
Sbjct: 61  PPP------PPPPVNCPPPPSPPSSGTYYYYSPPPPTQPTYTYSSPPPPRGINGGGYYQP 120

Query: 121 PPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           PPY++YPAPPPPNPIVPYFPFY+HTPPPGS SA  G LT+S+A SV+TVALF+FLL LF
Sbjct: 121 PPYNNYPAPPPPNPIVPYFPFYYHTPPPGS-SAAVGCLTNSLAYSVLTVALFSFLLTLF 171

[Close]

BLAST of Sed0001707 vs. NCBI nr
Match: XP_022955565.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 9.7e-65
Identity = 144/180 (80.00%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFS 60
           METAISLKFF+SLTAVLL+FPAGF SLP ADRRT  A  KYQIECTMCSACDNPCGQY S
Sbjct: 1   METAISLKFFISLTAVLLSFPAGFSSLPTADRRT-LAGAKYQIECTMCSACDNPCGQYLS 60

Query: 61  PPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIG--GYYQ 120
             PPPPPPSPPP + CPPPPSPP+SG YYY  PPPP+QP+YTYSSPPPP G  G  GYYQ
Sbjct: 61  --PPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQ 120

Query: 121 PPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           PPPYS+YPAPPPPNPIVPYFPFYFHTPPPG  SA AGRLT+S A SV+TV LF FLL LF
Sbjct: 121 PPPYSNYPAPPPPNPIVPYFPFYFHTPPPG--SAAAGRLTNSWACSVLTVPLFLFLLALF 175

[Close]

BLAST of Sed0001707 vs. NCBI nr
Match: KAG6582188.1 (hypothetical protein SDJN03_22190, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 143/180 (79.44%), Postives = 152/180 (84.44%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFS 60
           METAISLKFF+SLTAVLL+FPAGF SL  ADRRT  A  KYQIECTMCSACDNPCGQY S
Sbjct: 1   METAISLKFFVSLTAVLLSFPAGFSSLQTADRRT-LAGAKYQIECTMCSACDNPCGQYLS 60

Query: 61  PPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIG--GYYQ 120
             PPPPPPSPPP + CPPPPSPP+SG YYY  PPPP+QP+YTYSSPPPP G  G  GYYQ
Sbjct: 61  --PPPPPPSPPPAINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQ 120

Query: 121 PPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           PPPYS+YPAPPPPNPIVPYFPFYFHTPPPG  SA AGRLT+S A SV+TV LF FLL LF
Sbjct: 121 PPPYSNYPAPPPPNPIVPYFPFYFHTPPPG--SAAAGRLTNSWACSVLTVPLFLFLLALF 175

[Close]

BLAST of Sed0001707 vs. NCBI nr
Match: XP_022979944.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita maxima])

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-63
Identity = 143/180 (79.44%), Postives = 152/180 (84.44%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFS 60
           METAISLKFF+SLTAVLL+F AGF SLP ADRRT  A  KYQIECTMCSACDNPCGQY S
Sbjct: 1   METAISLKFFISLTAVLLSFTAGFSSLPTADRRT-LAGAKYQIECTMCSACDNPCGQYLS 60

Query: 61  PPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIG--GYYQ 120
             PPPPPPSPPP + CPPPPSPP+SG YYY  PPPP+QP+YTYSSPPPP G  G  GYYQ
Sbjct: 61  --PPPPPPSPPPSIDCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQ 120

Query: 121 PPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           PPPYS+YPAPPPPNPIVPYFPFYFHTPPPG  SA AGRLT+S A SV+TV LF FLL LF
Sbjct: 121 PPPYSNYPAPPPPNPIVPYFPFYFHTPPPG--SAAAGRLTNSWACSVLTVPLFFFLLALF 175

[Close]

BLAST of Sed0001707 vs. NCBI nr
Match: XP_023526139.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.9 bits (642), Expect = 4.1e-63
Identity = 142/180 (78.89%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFS 60
           METAISLK F+SLTAVLL+FPAGF SLP ADRRT  A  KYQIECTMCSACDNPCGQY S
Sbjct: 1   METAISLKLFISLTAVLLSFPAGFSSLPTADRRT-LAGAKYQIECTMCSACDNPCGQYLS 60

Query: 61  PPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIG--GYYQ 120
             PPPPPPSPPP + CPPPPSPP+SG YYY  PPPP+QP+YTYSS PPP G  G  GYYQ
Sbjct: 61  --PPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSSPPPPGNYGPSGYYQ 120

Query: 121 PPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           PPPYS+YPAPPPPNPIVPYFPFYFHTPPPG  SA AGRLT+S A SV+TV LF FLL LF
Sbjct: 121 PPPYSNYPAPPPPNPIVPYFPFYFHTPPPG--SAAAGRLTNSWACSVLTVPLFLFLLALF 175

[Close]

BLAST of Sed0001707 vs. ExPASy Swiss-Prot
Match: Q9LUI1 (Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=LRX6 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 52/121 (42.98%), Postives = 58/121 (47.93%), Query Frame = 0


Query: 31  DRRTATATTKYQ---IECTMCSACDNPCGQY-FSPPPPPPPPSPPPPVKCPPPPSPPTSG 90
           DRR    +   Q    EC   S+    C  +  SPP PPPPP PPPP   PPPP PP   
Sbjct: 342 DRRNCLPSRPMQRSLAECKSFSSYPIDCASFGCSPPSPPPPPPPPPPPPPPPPPPPP--- 401

Query: 91  NYYYYSPPPPAQPSYTYSSPPPPRGIIGGYYQPPPYSDYPAPPPPNPIVPYFPFYFHTPP 148
                 PPPP  P Y Y SPPPP      Y  PPP   Y  PPPP+P     P+ +  PP
Sbjct: 402 -----PPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPPSP-----PYVYPPPP 449

[Close]

BLAST of Sed0001707 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.4e-05
Identity = 49/101 (48.51%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 59  FSPPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIGGYYQ 118
           +SPPPPPPPP PPPPV  PPPPSPP      Y  PPPP  P      PPPP       Y 
Sbjct: 464 YSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPP------PPPP------VYS 523

Query: 119 PPPYSDYPAPPPPNPIVPYFPFYF--------HTPPPGSFS 152
           PPP   Y +PPPP    P  P Y         H+PPP  FS
Sbjct: 524 PPPPPVYSSPPPPPSPAP-TPVYCTRPPPPPPHSPPPPQFS 551

[Close]

BLAST of Sed0001707 vs. ExPASy TrEMBL
Match: A0A6J1GVF6 (leucine-rich repeat extensin-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111457543 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.7e-65
Identity = 144/180 (80.00%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFS 60
           METAISLKFF+SLTAVLL+FPAGF SLP ADRRT  A  KYQIECTMCSACDNPCGQY S
Sbjct: 1   METAISLKFFISLTAVLLSFPAGFSSLPTADRRT-LAGAKYQIECTMCSACDNPCGQYLS 60

Query: 61  PPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIG--GYYQ 120
             PPPPPPSPPP + CPPPPSPP+SG YYY  PPPP+QP+YTYSSPPPP G  G  GYYQ
Sbjct: 61  --PPPPPPSPPPSINCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQ 120

Query: 121 PPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           PPPYS+YPAPPPPNPIVPYFPFYFHTPPPG  SA AGRLT+S A SV+TV LF FLL LF
Sbjct: 121 PPPYSNYPAPPPPNPIVPYFPFYFHTPPPG--SAAAGRLTNSWACSVLTVPLFLFLLALF 175

[Close]

BLAST of Sed0001707 vs. ExPASy TrEMBL
Match: A0A6J1IXZ9 (leucine-rich repeat extensin-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC111479480 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.8e-64
Identity = 143/180 (79.44%), Postives = 152/180 (84.44%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFS 60
           METAISLKFF+SLTAVLL+F AGF SLP ADRRT  A  KYQIECTMCSACDNPCGQY S
Sbjct: 1   METAISLKFFISLTAVLLSFTAGFSSLPTADRRT-LAGAKYQIECTMCSACDNPCGQYLS 60

Query: 61  PPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIG--GYYQ 120
             PPPPPPSPPP + CPPPPSPP+SG YYY  PPPP+QP+YTYSSPPPP G  G  GYYQ
Sbjct: 61  --PPPPPPSPPPSIDCPPPPSPPSSGTYYYSPPPPPSQPTYTYSSPPPPPGNYGPSGYYQ 120

Query: 121 PPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           PPPYS+YPAPPPPNPIVPYFPFYFHTPPPG  SA AGRLT+S A SV+TV LF FLL LF
Sbjct: 121 PPPYSNYPAPPPPNPIVPYFPFYFHTPPPG--SAAAGRLTNSWACSVLTVPLFFFLLALF 175

[Close]

BLAST of Sed0001707 vs. ExPASy TrEMBL
Match: A0A6J1C7N8 (leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111009142 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.2e-62
Identity = 135/180 (75.00%), Postives = 146/180 (81.11%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTA--TATTKYQIECTMCSACDNPCGQY 60
           ME    L+F L L AVLL FPA   SLP  DRRT+    ++KYQIECTMCSACDNPCGQY
Sbjct: 1   MENGAPLRFLLPLAAVLLIFPATLWSLPATDRRTSAGAVSSKYQIECTMCSACDNPCGQY 60

Query: 61  FSPPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIGGYYQ 120
            S  PPPPPPSPPPPV CPPPPSPP+SG YYYYSPPPPAQP+YTYSSPPPPRGIIGGYYQ
Sbjct: 61  LS--PPPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPRGIIGGYYQ 120

Query: 121 PPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           PPPYS+YPAPPPPNPIVPYFPFY+HTPPPG  S+ A  LT++ A SV T  LFT LL LF
Sbjct: 121 PPPYSNYPAPPPPNPIVPYFPFYYHTPPPG--SSAAAHLTATSACSVFTATLFTLLLALF 176

[Close]

BLAST of Sed0001707 vs. ExPASy TrEMBL
Match: A0A0A0LAN7 (Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.4e-61
Identity = 137/180 (76.11%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFS 60
           MET I L+F +SLTA+LL FP+G  SLPV   R ++A  KYQIECTMCSACDNPC QY S
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPR-SSAGAKYQIECTMCSACDNPCAQYLS 60

Query: 61  PPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGII--GGYYQ 120
             PPPPPPSPPPPV CPPPPSPP+SG Y YYSPPPPAQPSYTYSSPPPP GII  GGYYQ
Sbjct: 61  --PPPPPPSPPPPVNCPPPPSPPSSGTYDYYSPPPPAQPSYTYSSPPPPGGIIGPGGYYQ 120

Query: 121 PPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           PPPYS+YPAPPPPNPIVPYFPF++HTPPPGS SA   RLT+S+  SV+TVALF+FLL LF
Sbjct: 121 PPPYSNYPAPPPPNPIVPYFPFFYHTPPPGS-SAAVPRLTNSLPCSVLTVALFSFLLALF 176

[Close]

BLAST of Sed0001707 vs. ExPASy TrEMBL
Match: A0A5A7U5R9 (Nutrient reservoir OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G007810 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.1e-57
Identity = 135/181 (74.59%), Postives = 148/181 (81.77%), Query Frame = 0


Query: 1   METAISLKFFLSLTAVLLTFPAGFGSLPVADRRTATATTKYQIECTMCSACDNPCGQYFS 60
           ME  ISL+  +SLT +LL       SLPV   R ++A  KYQIECTMCSACDNPCGQY S
Sbjct: 1   MEAPISLQILISLTPLLLLLLPRTSSLPVFHPR-SSAGAKYQIECTMCSACDNPCGQYLS 60

Query: 61  PPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYS-PPPPAQPSYTYSSPPPPRGII--GGYY 120
             PPPPPPSPPPPV CPPPPSPPTSG Y YYS PPPPAQP+YTYSSPPPPRGII  GGYY
Sbjct: 61  --PPPPPPSPPPPVNCPPPPSPPTSGTYDYYSPPPPPAQPTYTYSSPPPPRGIIGPGGYY 120

Query: 121 QPPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVAGSVITVALFTFLLGL 179
           QPPPY++YPAPPPPNPIVPYFPFY+HTPPPGS SA  GRLT+S+  SV+TVALF+FLL L
Sbjct: 121 QPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGS-SAAVGRLTNSLPCSVLTVALFSFLLVL 177

[Close]

BLAST of Sed0001707 vs. TAIR 10
Match: AT5G49280.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-26
Identity = 83/147 (56.46%), Postives = 93/147 (63.27%), Query Frame = 0


Query: 34  TATATTKYQ-IECTMCSACDNPCGQ-YFSPPPPPPPPSPPPPVKCPPPPSPPTSGNYYYY 93
           T T T+K + + CTMCS+CDNPC     SPPPP PPP   P   CPPPPSPP+SG    Y
Sbjct: 21  TPTVTSKDEVVSCTMCSSCDNPCSPVQSSPPPPSPPPPSTPTTACPPPPSPPSSGGGSSY 80

Query: 94  SPPPPAQPSYTYSSPPPPRGIIGGYYQPPPYS-DYPAPPPPNPIVPYFPFYFHTPPPGSF 153
             PPP+Q       PPP  G   GYY PPPYS +YP PPPPNPIVPYFPFY+HTPPPGS 
Sbjct: 81  YYPPPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYPTPPPPNPIVPYFPFYYHTPPPGS- 140

Query: 154 SAGAGRLTSSVAGSVITVALFTFLLGL 178
             G+ R  SS +   I  ALF   L L
Sbjct: 141 --GSDRFMSSYS---IIFALFAVFLCL 161

[Close]

BLAST of Sed0001707 vs. TAIR 10
Match: AT4G16140.1 (proline-rich family protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 78/152 (51.32%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 34  TATATTKYQI-ECTMCSACDNPCGQYFSPPPPPPPPSPPPP----VKCPPPPSPPTSGNY 93
           T T T+  QI +CTMC++CDNPC    SPPPPP  PSPPPP      CPPPPS    G Y
Sbjct: 19  TTTLTSPSQIADCTMCTSCDNPCQPNPSPPPPPSNPSPPPPSPTTTACPPPPSSSGGGPY 78

Query: 94  YYYSPPPPAQPSYTYSSPPPPRGIIGGYYQPPPYS--DYPAPPPPNPIVPYFPFYFHTPP 153
           YYY   PPA  S +Y   PPP    GGYY PPP S  +YP  PPPNPIVPYFPFY++ PP
Sbjct: 79  YYY---PPASQSGSYR--PPPSSSSGGYYYPPPKSGGNYPYTPPPNPIVPYFPFYYYNPP 138

Query: 154 PGSFSAGAGRLTSSVAGSVITVALFTFLLGLF 179
           P S  +G+        G V  + +F+   G F
Sbjct: 139 PQSVMSGSDAKIRFSYG-VSFILIFSLYFGCF 164

[Close]

BLAST of Sed0001707 vs. TAIR 10
Match: AT3G06750.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-18
Identity = 64/128 (50.00%), Postives = 75/128 (58.59%), Query Frame = 0


Query: 43  IECTMCSACDNPCGQYFSPPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYT 102
           + CTMCS+CDNPC         P P S  PP   PPPPS    G  YYYSPPPP+     
Sbjct: 30  VSCTMCSSCDNPCN--------PVPSSYSPP---PPPPSSSGGGGSYYYSPPPPSSSGGV 89

Query: 103 YSSPPPPRGIIGGYYQPPPYSDYPAPPPPNPIVPYFPFYFHTPPPGSFSAGAGRLTSSVA 162
              PP      GGYY PP Y +Y  PPPPNPIVPYFPFY+HTPP G   +G+ RL +S+ 
Sbjct: 90  KYPPPYGGDGYGGYYPPPYYGNYGTPPPPNPIVPYFPFYYHTPPQG--YSGSARLQNSLL 144

Query: 163 GSVITVAL 171
            ++  V L
Sbjct: 150 FALFAVLL 144

[Close]

BLAST of Sed0001707 vs. TAIR 10
Match: AT3G22800.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 54.7 bits (130), Expect = 8.9e-08
Identity = 52/121 (42.98%), Postives = 58/121 (47.93%), Query Frame = 0


Query: 31  DRRTATATTKYQ---IECTMCSACDNPCGQY-FSPPPPPPPPSPPPPVKCPPPPSPPTSG 90
           DRR    +   Q    EC   S+    C  +  SPP PPPPP PPPP   PPPP PP   
Sbjct: 342 DRRNCLPSRPMQRSLAECKSFSSYPIDCASFGCSPPSPPPPPPPPPPPPPPPPPPPP--- 401

Query: 91  NYYYYSPPPPAQPSYTYSSPPPPRGIIGGYYQPPPYSDYPAPPPPNPIVPYFPFYFHTPP 148
                 PPPP  P Y Y SPPPP      Y  PPP   Y  PPPP+P     P+ +  PP
Sbjct: 402 -----PPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPPSP-----PYVYPPPP 449

[Close]

BLAST of Sed0001707 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-06
Identity = 49/101 (48.51%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 59  FSPPPPPPPPSPPPPVKCPPPPSPPTSGNYYYYSPPPPAQPSYTYSSPPPPRGIIGGYYQ 118
           +SPPPPPPPP PPPPV  PPPPSPP      Y  PPPP  P      PPPP       Y 
Sbjct: 464 YSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPP------PPPP------VYS 523

Query: 119 PPPYSDYPAPPPPNPIVPYFPFYF--------HTPPPGSFS 152
           PPP   Y +PPPP    P  P Y         H+PPP  FS
Sbjct: 524 PPPPPVYSSPPPPPSPAP-TPVYCTRPPPPPPHSPPPPQFS 551

The following BLAST results are available for this feature:

BLAST of Sed0001707 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906774.1	8.8e-66	79.89	leucine-rich repeat extensin-like protein 6 [Benincasa hispida]	[more]
XP_022955565.1	9.7e-65	80.00	leucine-rich repeat extensin-like protein 6 [Cucurbita moschata]	[more]
KAG6582188.1	1.1e-63	79.44	hypothetical protein SDJN03_22190, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022979944.1	1.4e-63	79.44	leucine-rich repeat extensin-like protein 6 [Cucurbita maxima]	[more]
XP_023526139.1	4.1e-63	78.89	leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0001707 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUI1	1.3e-06	42.98	Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9T0K5	2.4e-05	48.51	Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of Sed0001707 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVF6	4.7e-65	80.00	leucine-rich repeat extensin-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IXZ9	6.8e-64	79.44	leucine-rich repeat extensin-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1C7N8	2.2e-62	75.00	leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A0A0LAN7	5.4e-61	76.11	Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1	[more]
A0A5A7U5R9	2.1e-57	74.59	Nutrient reservoir OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G0...	[more]

BLAST of Sed0001707 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49280.1	1.9e-26	56.46	hydroxyproline-rich glycoprotein family protein	[more]
AT4G16140.1	1.5e-23	51.32	proline-rich family protein	[more]
AT3G06750.1	1.1e-18	50.00	hydroxyproline-rich glycoprotein family protein	[more]
AT3G22800.1	8.9e-08	42.98	Leucine-rich repeat (LRR) family protein	[more]
AT4G13340.1	1.7e-06	48.51	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 116..133 score: 41.11 coord: 54..66 score: 36.92 coord: 66..87 score: 33.64 coord: 92..108 score: 44.71
None	No IPR available	PANTHER	PTHR37702	PROLINE-RICH FAMILY PROTEIN	coord: 31..173
None	No IPR available	PANTHER	PTHR37702:SF8	RESERVOIR, PUTATIVE-RELATED	coord: 31..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001707.1	Sed0001707.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane