Sed0001627 (gene) Chayote v1

Overview


Name	Sed0001627
Type	gene
Organism	Sechium edule (Chayote v1)
Description	UPF0400 protein C337.03
Location	LG05: 24989562 .. 24992147 (+)
RNA-Seq Expression	Sed0001627
Synteny	Sed0001627

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACCTCTTCCACGATGTCGCCGGTCCACTCGTCGGCTCGGAAGGTTCCTTTGATGGATTCGATGGATAGAACCATCACTCTGCTGCTCGGAGATTCGGAGGTCTCCAGAATCCGGTCCATGGGCATTGAATTAGAGTTAGGGCTCAGCCTCAGAAGTGGGGTTTCCGTCACCAAGGGTAAGCGCAGTGGTTGCAGTGACCGCGGTCGGATATTGACGGCGAAGGATTTTCCCTATGCGATCTCCCTACAGTTTCCGGCGTCAAGAGAGCAACAAAACTTGTTTTCCACCGACAGTGGATCTCCTTCGGCTATCAGGTTTGGGGGATGCTTTGTTTATGATCAATTGTTAAATGAGTTTGTTTATTAACTTTTCTCTTTATAGAATTGAGGATTTATTAAAATCTTGGCTTTGATTCCAATTTTCTCAAACATTGTTTGTTAAGTATTTGGGTCTGTTTTTTTTTTCCCCCCACCGTTTCTGTGGCAACGTTATTTGGTTGAAGTTGGCACAATGTACTTGTTTAACTTTATTTATGTGAAATGAAATCCAATGAATGTGTAATGAATAACTTGTCACTGCCACATATTTGAAAATAGATTAACTTCCGTTAGTGTTTTAGTCTGGTAACATGAGCTCAACGGTAATTGGCACCTACTACTCCTCTTAAGGTCGAAGGTTCGGTTGTGTCACTGTATCGGTCCTAGTGATGTTTCTTTTCATTTCTTTTCCAAGATGGGTTGTGTATGTATGCTTTCAATGTATCTTTTATCGCTTATTGTGGCTTCTTTGCATTTCTTTTCCAAGATGGGTTGTGGATGTATGCTCTCAATGTATCTTTTAGGGCTTATTGTGGTTTCTTTTCTTAGAGTTCCATCTTCTTTTCTATATGGTTTGGTACTGTAGCCTGTTACCTATGGTACTGGAACTGCCGTACTAATGCATGATACCCAATAATCCATTTATTGTACGCTTCTATTACTTTTACAATATATACATTCATGGAGAAGATAAGATTAAGGTAATTGATTTTAGGCACTAGGCTAGGCCCCTAGGCAGTGATTTTTTCTAAGAATAAAGTTGTCTCTATGTTGTTTTGCAATTATTCTTTAGAGATCATGTTTCTTCATTGAAGGGATTTCTGTAGGTAGCCCCCTAGGTGTCTGCCTTATTTCTTGTCTATTTGGAATTTTGGATAATTAGTTCCATCCTTAATGTGATTAAGCTTTATCCCATTGGTGTATATTTCACATGAACAAAGCCAAGCAAGTTGTAGAAACATGGGATAAGCAGTTTCATTGTTCTCCAAGCAAGCAGAAATTGGCCTACTTGTATCCTTACTTATGACATTTTGCAGAACAGTAGGCATAAAGACTCAGAGTTTGTTGGTGAATTTTGGAAAGTCCTTCCCAGTGCATTTCGTCATGTAATTGAAAATGGGGATGATTTTGGAAGAAATGCTGCCCTACCAATGGTATATCAATAATCATTGCTTACAATGCATCCTTATCCTCTGTCAATTATTTTCACGTGGATAAATTTTTGTAAACTTCCATCTACTGCACCTAAGAAAATATCTCATTAGATACTTTTTTTTATATAGGAAACAATACTTTTGATGAATGAAAAGTAGAAAGAAAGTGAAACCTATTGAAACTATTAAAAAAGACAACTCCAAAACAAAAGGAGAAATAAAAACCATCAATAATGAATAAAAAACCAAATAGTTACAGGTAAATGAAATTGTTTCTTATCCAAAAAAATGAAAGGTTTTCATAGATAAGTAAAACAATAAATATAAGGCCCTCCATGACCTGTGAAGAGTGATTACAACTCTTGATCAAAGATTAAAGTAAGGGTCTATAAAGGAACAAATCTTATATGGCAGAGATTTGTAAAAGAACAAATCTTGTATGAATATGTACATATCCAAATCCCTGTGGAGATAGTCGCCTAGGAAACTAAGAGGTTTAGAGTTCAATTTATTGTGGCCACATATCTAGGAATTAGTTTTCTATTGGTTTCCGTGACAACTAAATGTTGTAAGGTCAAGTACTAAATGTTGTAGAGCCCGTCAACGTAAGAATAATTAATGTGTGCATAAGTTGGCCAAACACTTAACAATTCTTATAATTTGCTGGACCACTCTTTTTTGTTTCTTATAAAAAAAAGTCTATTATATTTAAAATTAAATGTATTTAACGATTATTGATATGTTGAAGTGGAAGAGAATTTTGATTGTTATTTCTAGATCTGTTACCAGGTATGTTTTATTTAGACATATTTTAAATTTACTCACAGATTGGCATCTGTGAAGAGAGAAAAGTTTTTGGATCTCGAGGGCAGAGTCTTAAGGAAGAGATAATGGGAAAATATATGGAAAGTAGTAATCGAAATGGGAAGCAATTCAACATTAAACTGGTAAAATATTACTCTTCCATCATGACTACCCAGTTGTTGTATTAATAAATAGTCTGGCCAAGTGACCATTCAGTCACCTATTTTTATTTATTCTTACAACAGAAACAATCTTCGAGCGTATCATTGGATAAAATAGTTTCTGATTACCAAGTTGTTCATTGA

mRNA sequence

ATGGTCACCTCTTCCACGATGTCGCCGGTCCACTCGTCGGCTCGGAAGGTTCCTTTGATGGATTCGATGGATAGAACCATCACTCTGCTGCTCGGAGATTCGGAGGTCTCCAGAATCCGGTCCATGGGCATTGAATTAGAGTTAGGGCTCAGCCTCAGAAGTGGGGTTTCCGTCACCAAGGGTAAGCGCAGTGGTTGCAGTGACCGCGGTCGGATATTGACGGCGAAGGATTTTCCCTATGCGATCTCCCTACAGTTTCCGGCGTCAAGAGAGCAACAAAACTTGTTTTCCACCGACAGTGGATCTCCTTCGGCTATCAGTAGGCATAAAGACTCAGAGTTTGTTGGTGAATTTTGGAAAGTCCTTCCCAGTGCATTTCGTCATGTAATTGAAAATGGGGATGATTTTGGAAGAAATGCTGCCCTACCAATGATTGGCATCTGTGAAGAGAGAAAAGTTTTTGGATCTCGAGGGCAGAGTCTTAAGGAAGAGATAATGGGAAAATATATGGAAAGTAGTAATCGAAATGGGAAGCAATTCAACATTAAACTGAAACAATCTTCGAGCGTATCATTGGATAAAATAGTTTCTGATTACCAAGTTGTTCATTGA

Coding sequence (CDS)

ATGGTCACCTCTTCCACGATGTCGCCGGTCCACTCGTCGGCTCGGAAGGTTCCTTTGATGGATTCGATGGATAGAACCATCACTCTGCTGCTCGGAGATTCGGAGGTCTCCAGAATCCGGTCCATGGGCATTGAATTAGAGTTAGGGCTCAGCCTCAGAAGTGGGGTTTCCGTCACCAAGGGTAAGCGCAGTGGTTGCAGTGACCGCGGTCGGATATTGACGGCGAAGGATTTTCCCTATGCGATCTCCCTACAGTTTCCGGCGTCAAGAGAGCAACAAAACTTGTTTTCCACCGACAGTGGATCTCCTTCGGCTATCAGTAGGCATAAAGACTCAGAGTTTGTTGGTGAATTTTGGAAAGTCCTTCCCAGTGCATTTCGTCATGTAATTGAAAATGGGGATGATTTTGGAAGAAATGCTGCCCTACCAATGATTGGCATCTGTGAAGAGAGAAAAGTTTTTGGATCTCGAGGGCAGAGTCTTAAGGAAGAGATAATGGGAAAATATATGGAAAGTAGTAATCGAAATGGGAAGCAATTCAACATTAAACTGAAACAATCTTCGAGCGTATCATTGGATAAAATAGTTTCTGATTACCAAGTTGTTCATTGA

Protein sequence

MVTSSTMSPVHSSARKVPLMDSMDRTITLLLGDSEVSRIRSMGIELELGLSLRSGVSVTKGKRSGCSDRGRILTAKDFPYAISLQFPASREQQNLFSTDSGSPSAISRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIMGKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH

Homology

[Close]

BLAST of Sed0001627 vs. NCBI nr
Match: XP_022152479.1 (UPF0400 protein C337.03 [Momordica charantia] >XP_022152481.1 UPF0400 protein C337.03 [Momordica charantia])

HSP 1 Score: 158.3 bits (399), Expect = 7.0e-35
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 88  ASREQQNLFSTDSGSPSAISRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGI 147
           A REQ+  +   +      SR K SEFVGEFWKVLP A R VIENGDDFGRNAAL +IGI
Sbjct: 52  APREQRLAYLYLANDILQNSRRKGSEFVGEFWKVLPDALRDVIENGDDFGRNAALRLIGI 111

Query: 148 CEERKVFGSRGQSLKEEIMGKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH 204
            EERKVFGSRGQSLKEEIMGK++E+ NRNGKQF++KLKQS+S SLDKIV+ YQVV+
Sbjct: 112 WEERKVFGSRGQSLKEEIMGKHVETGNRNGKQFSVKLKQSTSTSLDKIVAGYQVVY 167

[Close]

BLAST of Sed0001627 vs. NCBI nr
Match: KAG6602704.1 (Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-34
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           SR K SEFVGEFWKVLP+A R VIENGDDFGRNAAL +IGI EERKVFGSRGQSLKEEIM
Sbjct: 71  SRRKGSEFVGEFWKVLPAALRDVIENGDDFGRNAALRLIGIWEERKVFGSRGQSLKEEIM 130

Query: 167 GKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVV 203
           GK+ME+ NRNGKQ ++KLKQS+S SLDKIVS YQ+V
Sbjct: 131 GKHMETGNRNGKQVSVKLKQSASESLDKIVSGYQIV 166

[Close]

BLAST of Sed0001627 vs. NCBI nr
Match: XP_008441251.1 (PREDICTED: UPF0400 protein C337.03 isoform X1 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-33
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           SR K SEFVGEFWKVLP A R VI NGD+FGRNAAL +IGI EERKVFGSRGQSLKEEIM
Sbjct: 71  SRRKGSEFVGEFWKVLPDALRDVIGNGDEFGRNAALRLIGIWEERKVFGSRGQSLKEEIM 130

Query: 167 GKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH 204
           GK++E+ NRNGK FN KLKQS+SVSLDKIVS YQVV+
Sbjct: 131 GKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVY 167

[Close]

BLAST of Sed0001627 vs. NCBI nr
Match: XP_004138638.1 (UPF0400 protein C337.03 [Cucumis sativus] >XP_031737380.1 UPF0400 protein C337.03 [Cucumis sativus] >KGN63123.1 hypothetical protein Csa_021963 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-33
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           SR K SEFVGEFWKVLP A R VI NGD+FGRNAAL +IGI EERKVFGSRGQSLKEEIM
Sbjct: 71  SRRKGSEFVGEFWKVLPDALRDVIGNGDEFGRNAALRLIGIWEERKVFGSRGQSLKEEIM 130

Query: 167 GKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH 204
           GK++E+ NRNGK FN KLKQS+SVSLDKIVS YQVV+
Sbjct: 131 GKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVY 167

[Close]

BLAST of Sed0001627 vs. NCBI nr
Match: XP_008441252.1 (PREDICTED: UPF0400 protein C337.03 isoform X2 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-33
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           SR K SEFVGEFWKVLP A R VI NGD+FGRNAAL +IGI EERKVFGSRGQSLKEEIM
Sbjct: 71  SRRKGSEFVGEFWKVLPDALRDVIGNGDEFGRNAALRLIGIWEERKVFGSRGQSLKEEIM 130

Query: 167 GKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH 204
           GK++E+ NRNGK FN KLKQS+SVSLDKIVS YQVV+
Sbjct: 131 GKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVY 167

[Close]

BLAST of Sed0001627 vs. ExPASy TrEMBL
Match: A0A6J1DG44 (UPF0400 protein C337.03 OS=Momordica charantia OX=3673 GN=LOC111020199 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.4e-35
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 88  ASREQQNLFSTDSGSPSAISRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGI 147
           A REQ+  +   +      SR K SEFVGEFWKVLP A R VIENGDDFGRNAAL +IGI
Sbjct: 52  APREQRLAYLYLANDILQNSRRKGSEFVGEFWKVLPDALRDVIENGDDFGRNAALRLIGI 111

Query: 148 CEERKVFGSRGQSLKEEIMGKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH 204
            EERKVFGSRGQSLKEEIMGK++E+ NRNGKQF++KLKQS+S SLDKIV+ YQVV+
Sbjct: 112 WEERKVFGSRGQSLKEEIMGKHVETGNRNGKQFSVKLKQSTSTSLDKIVAGYQVVY 167

[Close]

BLAST of Sed0001627 vs. ExPASy TrEMBL
Match: A0A5D3C5Q5 (UPF0400 protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001490 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           SR K SEFVGEFWKVLP A R VI NGD+FGRNAAL +IGI EERKVFGSRGQSLKEEIM
Sbjct: 37  SRRKGSEFVGEFWKVLPDALRDVIGNGDEFGRNAALRLIGIWEERKVFGSRGQSLKEEIM 96

Query: 167 GKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH 204
           GK++E+ NRNGK FN KLKQS+SVSLDKIVS YQVV+
Sbjct: 97  GKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVY 133

[Close]

BLAST of Sed0001627 vs. ExPASy TrEMBL
Match: E5GB39 (CID domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           SR K SEFVGEFWKVLP A R VI NGD+FGRNAAL +IGI EERKVFGSRGQSLKEEIM
Sbjct: 37  SRRKGSEFVGEFWKVLPDALRDVIGNGDEFGRNAALRLIGIWEERKVFGSRGQSLKEEIM 96

Query: 167 GKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH 204
           GK++E+ NRNGK FN KLKQS+SVSLDKIVS YQVV+
Sbjct: 97  GKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVY 133

[Close]

BLAST of Sed0001627 vs. ExPASy TrEMBL
Match: A0A0A0LMU3 (CID domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404750 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           SR K SEFVGEFWKVLP A R VI NGD+FGRNAAL +IGI EERKVFGSRGQSLKEEIM
Sbjct: 71  SRRKGSEFVGEFWKVLPDALRDVIGNGDEFGRNAALRLIGIWEERKVFGSRGQSLKEEIM 130

Query: 167 GKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH 204
           GK++E+ NRNGK FN KLKQS+SVSLDKIVS YQVV+
Sbjct: 131 GKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVY 167

[Close]

BLAST of Sed0001627 vs. ExPASy TrEMBL
Match: A0A1S3B3S0 (UPF0400 protein C337.03 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485437 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           SR K SEFVGEFWKVLP A R VI NGD+FGRNAAL +IGI EERKVFGSRGQSLKEEIM
Sbjct: 71  SRRKGSEFVGEFWKVLPDALRDVIGNGDEFGRNAALRLIGIWEERKVFGSRGQSLKEEIM 130

Query: 167 GKYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVVH 204
           GK++E+ NRNGK FN KLKQS+SVSLDKIVS YQVV+
Sbjct: 131 GKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVY 167

[Close]

BLAST of Sed0001627 vs. TAIR 10
Match: AT3G26990.1 (ENTH/VHS family protein )

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-25
Identity = 61/120 (50.83%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 88  ASREQQNLFSTDSGSPSAISRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGI 147
           A REQ+  +   +      SR K SEFVGEFWKVLP A R +IENGDDFGR +A  ++ I
Sbjct: 52  APREQRLAYLYLANDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDDFGRKSARRLVNI 111

Query: 148 CEERKVFGSRGQSLKEEIMGKYMESSNRNGKQFNIKL----KQSSSVSLDKIVSDYQVVH 204
            EERKVFGSRGQ LKEE++G+  E+  RNG    +KL    +Q +  +L+K+VS  +V+H
Sbjct: 112 WEERKVFGSRGQILKEELLGRQPENGTRNGNLVPLKLSVPQRQVNGSTLEKVVSAVEVLH 171

[Close]

BLAST of Sed0001627 vs. TAIR 10
Match: AT5G10060.1 (ENTH/VHS family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           S+ + +EFV EFW VLP A + ++  GDD G++A   +I I EER+VFGSR +SLK+ ++
Sbjct: 71  SKRQGNEFVQEFWNVLPKALKDIVSQGDDNGKSAVARVIKIWEERRVFGSRSKSLKDVML 130

Query: 167 GKYM--------------ESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVV 203
           G+ +              +SS R  K    KL  S  V+ +KI S Y +V
Sbjct: 131 GEDVPLPLDISKKRPRGSKSSKRESKSSRTKLASSGGVA-EKIASAYHLV 179

[Close]

BLAST of Sed0001627 vs. TAIR 10
Match: AT5G65180.1 (ENTH/VHS family protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-12
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 107 SRHKDSEFVGEFWKVLPSAFRHVIENGDDFGRNAALPMIGICEERKVFGSRGQSLKEEIM 166
           S+ + +EFV EFWKVLP A + ++  GDD+G+     ++ I EER+VFGSR +SLK+ ++
Sbjct: 71  SKRQGNEFVQEFWKVLPGALKDIVSLGDDYGKGVVSRLVNIWEERRVFGSRSKSLKDVML 130

Query: 167 G------------KYMESSNRNGKQFNIKLKQSSSVSLDKIVSDYQVV 203
                        ++  S +      + K K SS    +KIVS + +V
Sbjct: 131 SEEAPPPLDVSKKRFRGSKSAKRDSKSTKTKLSSGGVSEKIVSAFNLV 178

The following BLAST results are available for this feature:

BLAST of Sed0001627 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152479.1	7.0e-35	70.69	UPF0400 protein C337.03 [Momordica charantia] >XP_022152481.1 UPF0400 protein C3...	[more]
KAG6602704.1	2.7e-34	81.25	Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita ...	[more]
XP_008441251.1	1.0e-33	80.41	PREDICTED: UPF0400 protein C337.03 isoform X1 [Cucumis melo]	[more]
XP_004138638.1	1.0e-33	80.41	UPF0400 protein C337.03 [Cucumis sativus] >XP_031737380.1 UPF0400 protein C337.0...	[more]
XP_008441252.1	1.0e-33	80.41	PREDICTED: UPF0400 protein C337.03 isoform X2 [Cucumis melo]	[more]

BLAST of Sed0001627 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001627 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DG44	3.4e-35	70.69	UPF0400 protein C337.03 OS=Momordica charantia OX=3673 GN=LOC111020199 PE=4 SV=1	[more]
A0A5D3C5Q5	4.9e-34	80.41	UPF0400 protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
E5GB39	4.9e-34	80.41	CID domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0LMU3	4.9e-34	80.41	CID domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404750 PE=4 SV...	[more]
A0A1S3B3S0	4.9e-34	80.41	UPF0400 protein C337.03 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485437 PE=4 ...	[more]

BLAST of Sed0001627 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26990.1	3.1e-25	50.83	ENTH/VHS family protein	[more]
AT5G10060.1	1.2e-13	39.09	ENTH/VHS family protein	[more]
AT5G65180.1	3.1e-12	35.19	ENTH/VHS family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008942	ENTH/VHS	GENE3D	1.25.40.90		coord: 103..167 e-value: 2.7E-5 score: 26.1
None	No IPR available	PANTHER	PTHR12460	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	coord: 107..203
None	No IPR available	PANTHER	PTHR12460:SF23	OS01G0925000 PROTEIN	coord: 107..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001627.1	Sed0001627.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031124	mRNA 3'-end processing
cellular_component	GO:0016591	RNA polymerase II, holoenzyme
molecular_function	GO:0000993	RNA polymerase II complex binding