Sed0001592 (gene) Chayote v1

Overview


Name	Sed0001592
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP synthase delta chain, chloroplastic-like
Location	LG07: 37480129 .. 37480761 (-)
RNA-Seq Expression	Sed0001592
Synteny	Sed0001592

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTTTAGCAACAACCTCCGTTTCAGCCTTCAGAGTTCCATCAACCCTCCCTTCCTCATCTCGCGAGCTTCTTCACCTCAAGAATCACACCGCTCATCTTCCTCATCGCTCCCCTTCTCCCAGACCCCTAAATTTCCTCTCCACCCCCAAAGCCCTAAATCCCCTCCAGTTCTCCCCCTCCCCGAGCCGCTCCTCTTCGCCGCCTCTCCACCTCCGCCCAGTCGCCCGATACGCCGCCGCACTCCTCCACGCATCGCAATCCACTGCCTCCATCCACACGGTCGCCAAGGACGTCGGGCGATAGTCGAAGCGAATCGGATGGGTTCTGGATGATCAGTTTGTTGGCGAGGAGGAGAAAGGGCGATTGGTGAGGGAGGTTTTAGGGAAGGGAGGGTTTGAGAAGAAGGTGGTGAAATTGACGAAGATGTTGATGGAGAAGAAGAGATTGGGGATTTTGAATGAGGTTTTGAGGGAATTCGAGAGGATTTATGATCAACTATGTGGAACCGAAGTGGTGTTTGTTTGTTCGAGGAGGAAGATGGAGGAAAGGGAGTTGTTTGGGATTGCCAAGAATGTGTACAGGCGTACTGGGGCTCTCCATGTGAAGGTTAGAAGCTTCGTTATGTAA

mRNA sequence

ATGGATACTTTAGCAACAACCTCCGTTTCAGCCTTCAGAGTTCCATCAACCCTCCCTTCCTCATCTCGCGAGCTTCTTCACCTCAAGAATCACACCGCTCATCTTCCTCATCGCTCCCCTTCTCCCAGACCCCTAAATTTCCTCTCCACCCCCAAAGCCCTAAATCCCCTCCAGTTCTCCCCCTCCCCGAGCCGCTCCTCTTCGCCGCCTCTCCACCTCCGCCCAGTCGCCCGATACGCCGCCGCACTCCTCCACGCATCGCAATCCACTGCCTCCATCCACACGCGAATCGGATGGGTTCTGGATGATCAGTTTGTTGGCGAGGAGGAGAAAGGGCGATTGGTGAGGGAGGTTTTAGGGAAGGGAGGGTTTGAGAAGAAGGTGGTGAAATTGACGAAGATGTTGATGGAGAAGAAGAGATTGGGGATTTTGAATGAGGTTTTGAGGGAATTCGAGAGGATTTATGATCAACTATGTGGAACCGAAGTGGTGTTTGTTTGTTCGAGGAGGAAGATGGAGGAAAGGGAGTTGTTTGGGATTGCCAAGAATGTGTACAGGCGTACTGGGGCTCTCCATGTGAAGGTTAGAAGCTTCGTTATGTAA

Coding sequence (CDS)

ATGGATACTTTAGCAACAACCTCCGTTTCAGCCTTCAGAGTTCCATCAACCCTCCCTTCCTCATCTCGCGAGCTTCTTCACCTCAAGAATCACACCGCTCATCTTCCTCATCGCTCCCCTTCTCCCAGACCCCTAAATTTCCTCTCCACCCCCAAAGCCCTAAATCCCCTCCAGTTCTCCCCCTCCCCGAGCCGCTCCTCTTCGCCGCCTCTCCACCTCCGCCCAGTCGCCCGATACGCCGCCGCACTCCTCCACGCATCGCAATCCACTGCCTCCATCCACACGCGAATCGGATGGGTTCTGGATGATCAGTTTGTTGGCGAGGAGGAGAAAGGGCGATTGGTGAGGGAGGTTTTAGGGAAGGGAGGGTTTGAGAAGAAGGTGGTGAAATTGACGAAGATGTTGATGGAGAAGAAGAGATTGGGGATTTTGAATGAGGTTTTGAGGGAATTCGAGAGGATTTATGATCAACTATGTGGAACCGAAGTGGTGTTTGTTTGTTCGAGGAGGAAGATGGAGGAAAGGGAGTTGTTTGGGATTGCCAAGAATGTGTACAGGCGTACTGGGGCTCTCCATGTGAAGGTTAGAAGCTTCGTTATGTAA

Protein sequence

MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPRPLNFLSTPKALNPLQFSPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHTRIGWVLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERIYDQLCGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFVM

Homology

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BLAST of Sed0001592 vs. NCBI nr
Match: XP_022975394.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 5.8e-66
Identity = 152/220 (69.09%), Postives = 168/220 (76.36%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPR------PLNFLSTPKAL 60
           MDTL T+SVS  RVPSTL +SSR+LLHLKNH+AHLPHRSPS R      P NFLST K L
Sbjct: 1   MDTL-TSSVSTLRVPSTL-ASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTL 60

Query: 61  NPLQFSPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT---------------RIGW 120
           NP  FS SP RSSSP LH RP A YAAAL+ ASQ+T SIH+               RIG 
Sbjct: 61  NPFPFSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGG 120

Query: 121 VLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERIYDQLC 180
            L+D FVGEEEKGRLVRE+  KGGFEK+VVKLTKML+EKKRLGILNEVL EFERIYD+LC
Sbjct: 121 FLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIYDELC 180

Query: 181 GTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           GTEVV V S RKM+E ELFGIAKNV R +GA+ VKVRSF+
Sbjct: 181 GTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFI 218

[Close]

BLAST of Sed0001592 vs. NCBI nr
Match: XP_022974855.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita maxima] >XP_022974856.1 ATP synthase delta chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-64
Identity = 153/225 (68.00%), Postives = 169/225 (75.11%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPR------PLNFLSTPKAL 60
           MDTL T+SVS  RVPSTL +SSR+LLHLKNH+AHLPHRSPS R      P NFLST K L
Sbjct: 1   MDTL-TSSVSTLRVPSTL-ASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTL 60

Query: 61  NPLQF-----SPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT-------------- 120
           NPL F     S SP RSSSP LH RP A YAAAL+ ASQ+T SIH+              
Sbjct: 61  NPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRT 120

Query: 121 -RIGWVLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERI 180
            RIG  L+D FVGEEEKGRLVRE+  KGGFEK+VVKLTKML+EKKRLGILNEVL EFERI
Sbjct: 121 KRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERI 180

Query: 181 YDQLCGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           YD+LCGTEVV V S RKM+E ELFGIAKNV R +GA+ VKVRSF+
Sbjct: 181 YDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFI 223

[Close]

BLAST of Sed0001592 vs. NCBI nr
Match: XP_023540771.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.0 bits (650), Expect = 5.4e-64
Identity = 151/225 (67.11%), Postives = 169/225 (75.11%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPR------PLNFLSTPKAL 60
           MDTL T+SVS  RVPSTL +SSR+L+HLKNH+AHLPHRSPS R      P NFLST K L
Sbjct: 1   MDTL-TSSVSTLRVPSTL-ASSRDLIHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTL 60

Query: 61  NPLQF-----SPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT-------------- 120
           NPL F     S SP RSSSP LH RP A YAAAL+ ASQ+T SIH+              
Sbjct: 61  NPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRT 120

Query: 121 -RIGWVLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERI 180
            RIG  L+D FVGEEEKGRLVRE+  KGGFEK+VVKLTKML+EKKRLGILNEVL EFERI
Sbjct: 121 KRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERI 180

Query: 181 YDQLCGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           YD+LCGTEVV V S RKM+E EL+GIAKNV R +GA+ VKVRSF+
Sbjct: 181 YDELCGTEVVLVSSNRKMQEEELYGIAKNVQRLSGAMKVKVRSFI 223

[Close]

BLAST of Sed0001592 vs. NCBI nr
Match: KAG7028532.1 (ATP synthase delta chain, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-63
Identity = 151/225 (67.11%), Postives = 169/225 (75.11%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPR------PLNFLSTPKAL 60
           MDTL T+SVS  RVPSTL +SSR+LLHLKN++AHLPHRSPS R      P NFLST K L
Sbjct: 1   MDTL-TSSVSTLRVPSTL-ASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTL 60

Query: 61  NPLQF-----SPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT-------------- 120
           NPL F     S SP RSSSP LH RP A YAAAL+ ASQ+T SIH+              
Sbjct: 61  NPLPFSSSFSSSSPRRSSSPSLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRT 120

Query: 121 -RIGWVLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERI 180
            RIG  L+D FV EEEKGRLVRE+  KGGFEK+VVKLTKML+EKKRLGILNEVL EFERI
Sbjct: 121 KRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLVEKKRLGILNEVLSEFERI 180

Query: 181 YDQLCGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           YD+LCGTEVV V S RKM+E+ELFGIAKNV R +GA+ VKVRSF+
Sbjct: 181 YDELCGTEVVLVSSNRKMQEQELFGIAKNVQRLSGAMKVKVRSFI 223

[Close]

BLAST of Sed0001592 vs. NCBI nr
Match: XP_022934549.1 (ATP synthase delta chain, chloroplastic-like [Cucurbita moschata] >XP_022934555.1 ATP synthase delta chain, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 251.1 bits (640), Expect = 7.8e-63
Identity = 151/225 (67.11%), Postives = 168/225 (74.67%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPR------PLNFLSTPKAL 60
           MDTL T+SVS  RVPSTL +SSR+LLHLKN++AHLPHRSPS R      P NFLST K L
Sbjct: 1   MDTL-TSSVSTLRVPSTL-ASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTL 60

Query: 61  NPLQF-----SPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT-------------- 120
           NPL F     S SP RSSSP LH RP A YAAAL+ ASQ+T SIH+              
Sbjct: 61  NPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRT 120

Query: 121 -RIGWVLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERI 180
            RIG  L+D FV EEEKGRLVRE+  KGGFEK+VVKLTKML+EKKRLGILNEVL EFERI
Sbjct: 121 KRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERI 180

Query: 181 YDQLCGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           YD+LCGTEVV V S RKM+E ELFGIAKNV R +GA+ VKVRSF+
Sbjct: 181 YDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFI 223

[Close]

BLAST of Sed0001592 vs. ExPASy Swiss-Prot
Match: P32980 (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.4e-11
Identity = 41/136 (30.15%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 79  YAAALLHASQSTASIH------TRIGWVLDDQ---------FVGEEEKGRLVREVLGKGG 138
           YA AL   ++S  ++        +I  + DD+          VGEE+K  LV E++    
Sbjct: 69  YANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVSSSS 128

Query: 139 FEKKVVKLTKMLMEKKRLGILNEVLREFERIYDQLCGTEVVFVCSRRKMEERELFGIAKN 198
            +  V     +L++ KR+ ++ E+++EFE++Y+ L  TE+  V S  K+E + L  IAK 
Sbjct: 129 IQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQIAKG 188

Query: 199 VYRRTGALHVKVRSFV 200
           V R TG+ +V++++ +
Sbjct: 189 VQRLTGSKNVRIKTVI 204

[Close]

BLAST of Sed0001592 vs. ExPASy Swiss-Prot
Match: P11402 (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-08
Identity = 45/185 (24.32%), Postives = 87/185 (47.03%), Query Frame = 0


Query: 39  SPSPRPLNFLSTPKALNPLQF-----SPSPSRSSSPPLHLRPV----ARYAAALLHASQS 98
           +P P  L+F S+    NPL+      S   ++     L  R V    +RYA+AL   +  
Sbjct: 29  TPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYASALADVADV 88

Query: 99  TASIHTR---------------IGWVLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKM 158
           T ++                  + +   +  +  + K  ++ E++   G +        +
Sbjct: 89  TGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINI 148

Query: 159 LMEKKRLGILNEVLREFERIYDQLCGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVK 200
           L++ +R+ ++ E+L EFE +++++ GTEV  V S  K+E   L  IAK V + TGA +V+
Sbjct: 149 LIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVR 208

[Close]

BLAST of Sed0001592 vs. ExPASy Swiss-Prot
Match: Q07300 (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07
Identity = 50/177 (28.25%), Postives = 86/177 (48.59%), Query Frame = 0


Query: 41  SPRPLNFLSTPKALNPLQFSPSPSRSSSPPLHLRPVAR-----YAAALLHAS------QS 100
           +PR  +F    + L  L+ +P   R       +RP A      YA+AL   +      + 
Sbjct: 29  APRSASFARAARGLPSLRLAPPRRRGDL----VRPRAEAAADSYASALSEVAVENGTLEQ 88

Query: 101 TASIHTRIGWVLDDQFVGE---------EEKGRLVREVLGKGGFEKKVVKLTKMLMEKKR 160
           T S   ++  +  D+ V E         EEK  L+ E+      +  VV    ++++  R
Sbjct: 89  TVSDLEKLQKIFADETVAEFFDNPTVPREEKTALIDEIAKSYELQPHVVNFINVVVDNFR 148

Query: 161 LGILNEVLREFERIYDQLCGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRS 198
             IL E++ EFE I++ L GTEV  V S  ++E ++L  IA++V + TGA +V++++
Sbjct: 149 ATILPEIVVEFENIFNSLTGTEVATVTSVVQLESQDLAQIAQHVQKMTGAKNVRLKT 201

[Close]

BLAST of Sed0001592 vs. ExPASy Swiss-Prot
Match: Q02758 (ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 30/94 (31.91%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 106 VGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERIYDQLCGTEVVF 165
           V +  K +L+ E     GF+        +L++ KR+ ++ ++++EFE +Y+ L  TE+V 
Sbjct: 114 VEDSTKRQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVV 173

Query: 166 VCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           V S  K+E   L  IAK V + TGA  V+ ++ +
Sbjct: 174 VTSVVKLESHHLAQIAKQVQKLTGAKKVRTKTLL 207

[Close]

BLAST of Sed0001592 vs. ExPASy Swiss-Prot
Match: Q9SSS9 (ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATPD PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-06
Identity = 26/91 (28.57%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 109 EEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERIYDQLCGTEVVFVCS 168
           E+K +++ +++     +        +L++  R+ I+ E+++EFE +Y++L  T++  V S
Sbjct: 100 EKKRQVIDDIVKSSSLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRS 159

Query: 169 RRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
             K+E  +L  IAK V + TGA +V+V++ +
Sbjct: 160 VVKLEAPQLAQIAKQVQKLTGAKNVRVKTVI 190

[Close]

BLAST of Sed0001592 vs. ExPASy TrEMBL
Match: A0A6J1IKE3 (ATP synthase delta chain, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111474715 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.8e-66
Identity = 152/220 (69.09%), Postives = 168/220 (76.36%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPR------PLNFLSTPKAL 60
           MDTL T+SVS  RVPSTL +SSR+LLHLKNH+AHLPHRSPS R      P NFLST K L
Sbjct: 1   MDTL-TSSVSTLRVPSTL-ASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTL 60

Query: 61  NPLQFSPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT---------------RIGW 120
           NP  FS SP RSSSP LH RP A YAAAL+ ASQ+T SIH+               RIG 
Sbjct: 61  NPFPFSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRTKRIGG 120

Query: 121 VLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERIYDQLC 180
            L+D FVGEEEKGRLVRE+  KGGFEK+VVKLTKML+EKKRLGILNEVL EFERIYD+LC
Sbjct: 121 FLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERIYDELC 180

Query: 181 GTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           GTEVV V S RKM+E ELFGIAKNV R +GA+ VKVRSF+
Sbjct: 181 GTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFI 218

[Close]

BLAST of Sed0001592 vs. ExPASy TrEMBL
Match: A0A6J1IF16 (ATP synthase delta chain, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111473623 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 6.9e-65
Identity = 153/225 (68.00%), Postives = 169/225 (75.11%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPR------PLNFLSTPKAL 60
           MDTL T+SVS  RVPSTL +SSR+LLHLKNH+AHLPHRSPS R      P NFLST K L
Sbjct: 1   MDTL-TSSVSTLRVPSTL-ASSRDLLHLKNHSAHLPHRSPSRRSNSISKPPNFLSTHKTL 60

Query: 61  NPLQF-----SPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT-------------- 120
           NPL F     S SP RSSSP LH RP A YAAAL+ ASQ+T SIH+              
Sbjct: 61  NPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRT 120

Query: 121 -RIGWVLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERI 180
            RIG  L+D FVGEEEKGRLVRE+  KGGFEK+VVKLTKML+EKKRLGILNEVL EFERI
Sbjct: 121 KRIGGFLNDPFVGEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERI 180

Query: 181 YDQLCGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           YD+LCGTEVV V S RKM+E ELFGIAKNV R +GA+ VKVRSF+
Sbjct: 181 YDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFI 223

[Close]

BLAST of Sed0001592 vs. ExPASy TrEMBL
Match: A0A6J1F2X7 (ATP synthase delta chain, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441689 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.8e-63
Identity = 151/225 (67.11%), Postives = 168/225 (74.67%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPR------PLNFLSTPKAL 60
           MDTL T+SVS  RVPSTL +SSR+LLHLKN++AHLPHRSPS R      P NFLST K L
Sbjct: 1   MDTL-TSSVSTLRVPSTL-ASSRDLLHLKNYSAHLPHRSPSRRSNSISKPPNFLSTHKTL 60

Query: 61  NPLQF-----SPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT-------------- 120
           NPL F     S SP RSSSP LH RP A YAAAL+ ASQ+T SIH+              
Sbjct: 61  NPLPFSSSFSSSSPRRSSSPLLHRRPAAGYAAALVDASQTTGSIHSVAKDVGRFSKVLRT 120

Query: 121 -RIGWVLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERI 180
            RIG  L+D FV EEEKGRLVRE+  KGGFEK+VVKLTKML+EKKRLGILNEVL EFERI
Sbjct: 121 KRIGGFLNDPFVVEEEKGRLVREIAAKGGFEKQVVKLTKMLIEKKRLGILNEVLSEFERI 180

Query: 181 YDQLCGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           YD+LCGTEVV V S RKM+E ELFGIAKNV R +GA+ VKVRSF+
Sbjct: 181 YDELCGTEVVLVSSNRKMQEEELFGIAKNVQRLSGAMKVKVRSFI 223

[Close]

BLAST of Sed0001592 vs. ExPASy TrEMBL
Match: A0A6J1D0B5 (ATP synthase delta chain, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016400 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.9e-59
Identity = 141/215 (65.58%), Postives = 157/215 (73.02%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPR------PLNFLSTPKAL 60
           MD L T+SVS  RVPSTL SSSR+  + KN +AHLPHRS S R      P NFLST K L
Sbjct: 26  MDAL-TSSVSTLRVPSTLHSSSRDFFNFKN-SAHLPHRSSSSRSNSISKPPNFLSTHKPL 85

Query: 61  NPLQFSPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT----------RIGWVLDDQ 120
            PL FSPSP RSSSP LH RP A YAAAL+  +QS  SIH+          RIG +L+D 
Sbjct: 86  QPLPFSPSPRRSSSPVLHRRPAAGYAAALVDVAQSAGSIHSVARDVGRFSKRIGGILNDP 145

Query: 121 FVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERIYDQLCGTEVV 180
           FVGEEEKG LVRE+  KGGF++ VV+LTKML+EKK+LGIL EVL EFERIYDQLCGTEVV
Sbjct: 146 FVGEEEKGGLVREIAAKGGFQRPVVRLTKMLIEKKKLGILKEVLSEFERIYDQLCGTEVV 205

Query: 181 FVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
            V S RKMEE ELFGIAKNV   TGA  VK+RSFV
Sbjct: 206 MVSSSRKMEEEELFGIAKNVQSLTGAAKVKIRSFV 238

[Close]

BLAST of Sed0001592 vs. ExPASy TrEMBL
Match: A0A0A0L326 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119340 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.4e-57
Identity = 136/221 (61.54%), Postives = 158/221 (71.49%), Query Frame = 0


Query: 1   MDTLATTSV-SAFRVPSTLPSSSRELLHLKNHTAHLPHRSPS------PRPLNFLSTPKA 60
           MDTL T SV SA RVPS   +SSR+ LHLKN TAHLPHRSPS       +P NFLSTP+ 
Sbjct: 1   MDTLTTPSVSSALRVPSRTLTSSRDFLHLKNPTAHLPHRSPSRTSNSISKPPNFLSTPQT 60

Query: 61  LNPLQFSPSPSRSSSPPLHLRPVARYAAALLHASQSTASIHT---------------RIG 120
           LNP     +P RSSSP LH RP + YAAALL ASQST +IH+               RIG
Sbjct: 61  LNPSIPFSTPRRSSSPLLHRRPASGYAAALLDASQSTGTIHSVAKDVGRFSKLLRGKRIG 120

Query: 121 WVLDDQFVGEEEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERIYDQL 180
            VL+D  VG+EEKGRLV+E+  KGGFE++VVKLTKML+EK +L IL EV  EFER+YD+L
Sbjct: 121 RVLNDPLVGDEEKGRLVKEIAVKGGFERQVVKLTKMLIEKSKLSILTEVFSEFERVYDEL 180

Query: 181 CGTEVVFVCSRRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
           CGTEVV V S +KMEE EL GIAKNV R +GA+ VKVRSF+
Sbjct: 181 CGTEVVMVSSSKKMEEEELIGIAKNVQRLSGAIKVKVRSFI 221

[Close]

BLAST of Sed0001592 vs. TAIR 10
Match: AT4G09650.1 (ATP synthase delta-subunit gene )

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-07
Identity = 26/91 (28.57%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 109 EEKGRLVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERIYDQLCGTEVVFVCS 168
           E+K +++ +++     +        +L++  R+ I+ E+++EFE +Y++L  T++  V S
Sbjct: 100 EKKRQVIDDIVKSSSLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRS 159

Query: 169 RRKMEERELFGIAKNVYRRTGALHVKVRSFV 200
             K+E  +L  IAK V + TGA +V+V++ +
Sbjct: 160 VVKLEAPQLAQIAKQVQKLTGAKNVRVKTVI 190

[Close]

BLAST of Sed0001592 vs. TAIR 10
Match: AT4G00895.1 (ATPase, F1 complex, OSCP/delta subunit protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.5e-07
Identity = 59/192 (30.73%), Postives = 91/192 (47.40%), Query Frame = 0


Query: 1   MDTLATTSVSAFRVPSTLPSSSRELLHLKNHTAHLPHRSPSPRPLNFLSTPKALNPLQFS 60
           MDTL + SVS+  +PS  P     L  + +      + + S    N LS P + +P   S
Sbjct: 1   MDTL-SASVSSLNLPSLPPPPQPPLRSISSRFKSTVNATTSASSTN-LSKPTSSSPSSAS 60

Query: 61  PSPSRSSS----------------------PPLHLRPVARYAAALLHASQSTASIHTRIG 120
            S +R+ +                      PP+H +  + +AAAL+   QS   +     
Sbjct: 61  YSQNRNPNFLKAISFHLPQTKPSRVVTPPPPPVHDKAASGFAAALVSVCQSKNCLGRTQE 120

Query: 121 WV--LDDQFVGEEEKGR--LVREVLGKGGFEKKVVKLTKMLMEKKRLGILNEVLREFERI 167
            V  L +  VGEE+K    LV +V+ +G F K    L KML+ + + GIL +VL EFERI
Sbjct: 121 DVRRLMEFLVGEEKKRNKVLVNDVVERGKFGKHFKGLVKMLIARGKSGILVDVLMEFERI 180

The following BLAST results are available for this feature:

BLAST of Sed0001592 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022975394.1	5.8e-66	69.09	ATP synthase delta chain, chloroplastic-like [Cucurbita maxima]	[more]
XP_022974855.1	1.4e-64	68.00	ATP synthase delta chain, chloroplastic-like [Cucurbita maxima] >XP_022974856.1 ...	[more]
XP_023540771.1	5.4e-64	67.11	ATP synthase delta chain, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG7028532.1	3.5e-63	67.11	ATP synthase delta chain, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022934549.1	7.8e-63	67.11	ATP synthase delta chain, chloroplastic-like [Cucurbita moschata] >XP_022934555....	[more]

BLAST of Sed0001592 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32980	9.4e-11	30.15	ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=...	[more]
P11402	4.4e-08	24.32	ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=...	[more]
Q07300	4.8e-07	28.25	ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 ...	[more]
Q02758	1.1e-06	31.91	ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV...	[more]
Q9SSS9	5.4e-06	28.57	ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATP...	[more]

BLAST of Sed0001592 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IKE3	2.8e-66	69.09	ATP synthase delta chain, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1IF16	6.9e-65	68.00	ATP synthase delta chain, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1F2X7	3.8e-63	67.11	ATP synthase delta chain, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1D0B5	1.9e-59	65.58	ATP synthase delta chain, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A0A0L326	2.4e-57	61.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119340 PE=3 SV=1	[more]

BLAST of Sed0001592 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09650.1	3.8e-07	28.57	ATP synthase delta-subunit gene	[more]
AT4G00895.1	6.5e-07	30.73	ATPase, F1 complex, OSCP/delta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000711	ATPase, OSCP/delta subunit	PFAM	PF00213	OSCP	coord: 88..196 e-value: 2.6E-12 score: 47.2
IPR000711	ATPase, OSCP/delta subunit	PANTHER	PTHR11910	ATP SYNTHASE DELTA CHAIN	coord: 1..198
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	GENE3D	1.10.520.20		coord: 77..152 e-value: 6.2E-7 score: 31.9
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	SUPERFAMILY	47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 78..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..69
None	No IPR available	PANTHER	PTHR11910:SF8	ATPASE, F1 COMPLEX, OSCP/DELTA SUBUNIT PROTEIN	coord: 1..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001592.1	Sed0001592.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism