Sed0001469 (gene) Chayote v1

Overview


Name	Sed0001469
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Plant transposase
Location	LG02: 32564166 .. 32564703 (-)
RNA-Seq Expression	Sed0001469
Synteny	Sed0001469

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGGTTGTGGAGAGCAAGTAAATCACGCTTGGTGAGTAAGATTCGAAGTGCTTCCCACGATGAGTTGGATACATTAAAGCCCGATAATATTACTTCAATGCATGATTGGAACGACTTAATCAAAGATAAAACAAGTGCACAGTTTAAGGTATGTTAGTTTTGTTAAGTCTTTTCTGAGTTTGCTACATATTTGTTTATATGGTATCCAAAATGATTGAAACTTAAAGTATTGTATTGGTCACTTTAGGCAAAAAGCAAAAAATTTCAAGAGATCAAGAAAAAACAACTTCCTCACACATGTAGTCGTAAAGGCTATGCTCGACTGACTGAAGACATGGTACTATTAAATATAATAACATTGTTACTTATAATTAACAATCCATAATATATAACTAAATAATTATTTTTTATGCTAAATTATGTAGAAAAGTAGTTCATCAACTAATATTACACGAGTAATGGTTTGGACAAGGGCACATACGAAGAAAGATGGACAACCTGTTAACTCACAAGTTGCAGACACAATGGTATGA

mRNA sequence

ATGGGTGGGTTGTGGAGAGCAAGTAAATCACGCTTGGTGAGTAAGATTCGAAGTGCTTCCCACGATGAGTTGGATACATTAAAGCCCGATAATATTACTTCAATGCATGATTGGAACGACTTAATCAAAGATAAAACAAGTGCACAGTTTAAGGCAAAAAGCAAAAAATTTCAAGAGATCAAGAAAAAACAACTTCCTCACACATGTAGTCGTAAAGGCTATGCTCGACTGACTGAAGACATGAAAAGTAGTTCATCAACTAATATTACACGAGTAATGGTTTGGACAAGGGCACATACGAAGAAAGATGGACAACCTGTTAACTCACAAGTTGCAGACACAATGGTATGA

Coding sequence (CDS)

ATGGGTGGGTTGTGGAGAGCAAGTAAATCACGCTTGGTGAGTAAGATTCGAAGTGCTTCCCACGATGAGTTGGATACATTAAAGCCCGATAATATTACTTCAATGCATGATTGGAACGACTTAATCAAAGATAAAACAAGTGCACAGTTTAAGGCAAAAAGCAAAAAATTTCAAGAGATCAAGAAAAAACAACTTCCTCACACATGTAGTCGTAAAGGCTATGCTCGACTGACTGAAGACATGAAAAGTAGTTCATCAACTAATATTACACGAGTAATGGTTTGGACAAGGGCACATACGAAGAAAGATGGACAACCTGTTAACTCACAAGTTGCAGACACAATGGTATGA

Protein sequence

MGGLWRASKSRLVSKIRSASHDELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQEIKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTMV

Homology

[Close]

BLAST of Sed0001469 vs. NCBI nr
Match: KAA0032201.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D EL+ LKPDNI+SMHDWND IK KTSA FKAKSKKF++
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCSR+GYARL ED+K SSST ITRV VWT+AH KKDG P+NSQVADT+
Sbjct: 255 MKQKQLPHTCSRRGYARLAEDLKKSSSTPITRVDVWTKAHVKKDGTPMNSQVADTL 310

[Close]

BLAST of Sed0001469 vs. NCBI nr
Match: KAA0057491.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 90/116 (77.59%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D E + LKPDNI+SMHDWND IK KTSA FKAKSKKF++
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEEFNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCSR+GYARL ED+K SSST+ITRV VWT+AH KKDG P+NSQVADT+
Sbjct: 255 MKQKQLPHTCSRRGYARLAEDLKKSSSTSITRVDVWTKAHVKKDGTPMNSQVADTL 310

[Close]

BLAST of Sed0001469 vs. NCBI nr
Match: TYK14770.1 (uncharacterized protein E5676_scaffold1610G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 90/116 (77.59%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D EL+ +KPDNI+SMHDWND IK KTSA FKAKSKKF++
Sbjct: 239 MGGLWRASKSRLVSKIGEASNDEELNKIKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 298

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCSRKGYARL ED+K+SSST ITRV VWT+ H KKDG P+NSQVADT+
Sbjct: 299 MKQKQLPHTCSRKGYARLAEDLKNSSSTPITRVDVWTKTHVKKDGTPMNSQVADTL 354

[Close]

BLAST of Sed0001469 vs. NCBI nr
Match: KAA0051001.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 6.4e-41
Identity = 90/116 (77.59%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D EL  LKPDNI+SMHDWND IK KTSA FKAKSKKF++
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEELSKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCS +GYARL ED+K SSST ITRV VWT+AH KKDG P+NSQVADT+
Sbjct: 255 MKQKQLPHTCSHRGYARLAEDLKKSSSTPITRVDVWTKAHVKKDGTPMNSQVADTL 310

[Close]

BLAST of Sed0001469 vs. NCBI nr
Match: KAA0042856.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 8.3e-41
Identity = 90/116 (77.59%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D EL+ LKPDNI+SMHDWND IK KTSA FKAKSK F++
Sbjct: 195 MGGLWRASKSRLVSKIGKASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKTFKD 254

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCSR+GYARL ED+K SSST ITRV VWT+AH KKDG P+NSQVADT+
Sbjct: 255 MKQKQLPHTCSRRGYARLAEDLKKSSSTLITRVDVWTKAHVKKDGTPMNSQVADTL 310

[Close]

BLAST of Sed0001469 vs. ExPASy TrEMBL
Match: A0A5A7SRN7 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00120 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.2e-42
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D EL+ LKPDNI+SMHDWND IK KTSA FKAKSKKF++
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCSR+GYARL ED+K SSST ITRV VWT+AH KKDG P+NSQVADT+
Sbjct: 255 MKQKQLPHTCSRRGYARLAEDLKKSSSTPITRVDVWTKAHVKKDGTPMNSQVADTL 310

[Close]

BLAST of Sed0001469 vs. ExPASy TrEMBL
Match: A0A5A7UVF2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003770 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.1e-42
Identity = 90/116 (77.59%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D E + LKPDNI+SMHDWND IK KTSA FKAKSKKF++
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEEFNKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCSR+GYARL ED+K SSST+ITRV VWT+AH KKDG P+NSQVADT+
Sbjct: 255 MKQKQLPHTCSRRGYARLAEDLKKSSSTSITRVDVWTKAHVKKDGTPMNSQVADTL 310

[Close]

BLAST of Sed0001469 vs. ExPASy TrEMBL
Match: A0A5D3CTK4 (Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00080 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 90/116 (77.59%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D EL+ +KPDNI+SMHDWND IK KTSA FKAKSKKF++
Sbjct: 239 MGGLWRASKSRLVSKIGEASNDEELNKIKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 298

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCSRKGYARL ED+K+SSST ITRV VWT+ H KKDG P+NSQVADT+
Sbjct: 299 MKQKQLPHTCSRKGYARLAEDLKNSSSTPITRVDVWTKTHVKKDGTPMNSQVADTL 354

[Close]

BLAST of Sed0001469 vs. ExPASy TrEMBL
Match: A0A5A7UBP2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00210 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.1e-41
Identity = 90/116 (77.59%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D EL  LKPDNI+SMHDWND IK KTSA FKAKSKKF++
Sbjct: 195 MGGLWRASKSRLVSKIGEASNDEELSKLKPDNISSMHDWNDFIKHKTSATFKAKSKKFKD 254

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCS +GYARL ED+K SSST ITRV VWT+AH KKDG P+NSQVADT+
Sbjct: 255 MKQKQLPHTCSHRGYARLAEDLKKSSSTPITRVDVWTKAHVKKDGTPMNSQVADTL 310

[Close]

BLAST of Sed0001469 vs. ExPASy TrEMBL
Match: A0A5A7TLJ2 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003690 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.0e-41
Identity = 90/116 (77.59%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 1   MGGLWRASKSRLVSKIRSASHD-ELDTLKPDNITSMHDWNDLIKDKTSAQFKAKSKKFQE 60
           MGGLWRASKSRLVSKI  AS+D EL+ LKPDNI+SMHDWND IK KTSA FKAKSK F++
Sbjct: 195 MGGLWRASKSRLVSKIGKASNDEELNKLKPDNISSMHDWNDFIKHKTSATFKAKSKTFKD 254

Query: 61  IKKKQLPHTCSRKGYARLTEDMKSSSSTNITRVMVWTRAHTKKDGQPVNSQVADTM 116
           +K+KQLPHTCSR+GYARL ED+K SSST ITRV VWT+AH KKDG P+NSQVADT+
Sbjct: 255 MKQKQLPHTCSRRGYARLAEDLKKSSSTLITRVDVWTKAHVKKDGTPMNSQVADTL 310

The following BLAST results are available for this feature:

BLAST of Sed0001469 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032201.1	1.3e-41	78.45	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0057491.1	1.7e-41	77.59	Plant transposase [Cucumis melo var. makuwa]	[more]
TYK14770.1	2.2e-41	77.59	uncharacterized protein E5676_scaffold1610G00080 [Cucumis melo var. makuwa]	[more]
KAA0051001.1	6.4e-41	77.59	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0042856.1	8.3e-41	77.59	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of Sed0001469 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001469 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRN7	6.2e-42	78.45	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00...	[more]
A0A5A7UVF2	8.1e-42	77.59	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00...	[more]
A0A5D3CTK4	1.1e-41	77.59	Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UBP2	3.1e-41	77.59	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G0...	[more]
A0A5A7TLJ2	4.0e-41	77.59	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003...	[more]

BLAST of Sed0001469 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 36..115 e-value: 7.9E-12 score: 45.5
None	No IPR available	PANTHER	PTHR33144	OS10G0409366 PROTEIN-RELATED	coord: 1..83
None	No IPR available	PANTHER	PTHR33144:SF27	SUBFAMILY NOT NAMED	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001469.1	Sed0001469.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane