Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAGATCGAAGTTCAAAATTGAAAGCAAAATTACCAAACGCCAAAGTTTCTGTTTCTCTTCTTCAAGGTGATCGGATTCTCTCACCGGGCTCCGATTCTAGGGTTTCAGCTCAGGCGACTATTCCGATGGATGAGCCGCCGCACAAGAATCCCGTTCCTCGGTGCCAAGAATGCTACATTCCTCAGTTCGAGTGCTGGATCCGCCACTATTTTCTACTCAACTTGTACATCCGCCGTTTCTGCACGAATTGCGTCCTCAAGAACAGTCTCGACGGTTTCTGTCCCGTTTGCTTCGAGGTTTACGAAGATTCGACTGCGCCGCCGCCGTGTCCTGACCGGGTAATTTGCTCGAAATGTCCTTCGATTTCTCATCGATCTTGCATTTCTTCTGGTTTTGATTCTGCGTATCTGTGTCCTCTCTGCTCCGATCCTAATCTCGCCTTCTTTAGTCTTGGCCGATCGGAGGCCGGGAGGATTGTTGATCTTAAATCGTCGAAGGTGTTTCTTGCTGCCGCTACTCTTGCCGCTCGGTCGATGCGAAAAGCCGTGGCTGGCGCTAGGGCTGTAGCGGATAAGGAGATCGAGATGGCTGTGATTGCTAGGAAGGAGGCTATTCGCGCGTTGGAGCGATTTGCTTTTATTGATCAACCGGAGAAAGTTAGAAAGGAAAGTGCTAATAGAAATAGTAATAAAGATGATGATGATTCAAAGGCTAATAGTGATACTAATGTTGATGCTGATTCAAAGGCTGATAGTAGTGGAGATGCTGCTTTTGCAGAAGAATTAACTGAAATGCTTGAGTTTGATTCAAAGGCCGATACTAATAGAGATGATGATTCAAAGGCTAATAGTGATACTAATGTAGATGCTGATTCAAATGCTGATAGTAAGAATGGTGGAGATGCTGAGTTTGCAGAAGAATTAGCTGAAATGCTCGATTCTGATTCTAACGATGATAACTGA
mRNA sequence
ATGTGCAGATCGAAGTTCAAAATTGAAAGCAAAATTACCAAACGCCAAAGTGATCGGATTCTCTCACCGGGCTCCGATTCTAGGGTTTCAGCTCAGGCGACTATTCCGATGGATGAGCCGCCGCACAAGAATCCCGTTCCTCGGTGCCAAGAATGCTACATTCCTCAGTTCGAGTGCTGGATCCGCCACTATTTTCTACTCAACTTGTACATCCGCCGTTTCTGCACGAATTGCGTCCTCAAGAACAGTCTCGACGGTTTCTGTCCCGTTTGCTTCGAGGTTTACGAAGATTCGACTGCGCCGCCGCCGTGTCCTGACCGGGTAATTTGCTCGAAATGTCCTTCGATTTCTCATCGATCTTGCATTTCTTCTGGTTTTGATTCTGCGTATCTGTGTCCTCTCTGCTCCGATCCTAATCTCGCCTTCTTTAGTCTTGGCCGATCGGAGGCCGGGAGGATTGTTGATCTTAAATCGTCGAAGGTGTTTCTTGCTGCCGCTACTCTTGCCGCTCGGTCGATGCGAAAAGCCGTGGCTGGCGCTAGGGCTGTAGCGGATAAGGAGATCGAGATGGCTGTGATTGCTAGGAAGGAGGCTATTCGCGCGTTGGAGCGATTTGCTTTTATTGATCAACCGGAGAAAGTTAGAAAGGAAAGTGCTAATAGAAATAGTAATAAAGATGATGATGATTCAAAGGCTAATAGTGATACTAATGTTGATGCTGATTCAAAGGCTGATAGTAGTGGAGATGCTGCTTTTGCAGAAGAATTAACTGAAATGCTTGAGTTTGATTCAAAGGCCGATACTAATAGAGATGATGATTCAAAGGCTAATAGTGATACTAATGTAGATGCTGATTCAAATGCTGATAGTAAGAATGGTGGAGATGCTGAGTTTGCAGAAGAATTAGCTGAAATGCTCGATTCTGATTCTAACGATGATAACTGA
Coding sequence (CDS)
ATGTGCAGATCGAAGTTCAAAATTGAAAGCAAAATTACCAAACGCCAAAGTGATCGGATTCTCTCACCGGGCTCCGATTCTAGGGTTTCAGCTCAGGCGACTATTCCGATGGATGAGCCGCCGCACAAGAATCCCGTTCCTCGGTGCCAAGAATGCTACATTCCTCAGTTCGAGTGCTGGATCCGCCACTATTTTCTACTCAACTTGTACATCCGCCGTTTCTGCACGAATTGCGTCCTCAAGAACAGTCTCGACGGTTTCTGTCCCGTTTGCTTCGAGGTTTACGAAGATTCGACTGCGCCGCCGCCGTGTCCTGACCGGGTAATTTGCTCGAAATGTCCTTCGATTTCTCATCGATCTTGCATTTCTTCTGGTTTTGATTCTGCGTATCTGTGTCCTCTCTGCTCCGATCCTAATCTCGCCTTCTTTAGTCTTGGCCGATCGGAGGCCGGGAGGATTGTTGATCTTAAATCGTCGAAGGTGTTTCTTGCTGCCGCTACTCTTGCCGCTCGGTCGATGCGAAAAGCCGTGGCTGGCGCTAGGGCTGTAGCGGATAAGGAGATCGAGATGGCTGTGATTGCTAGGAAGGAGGCTATTCGCGCGTTGGAGCGATTTGCTTTTATTGATCAACCGGAGAAAGTTAGAAAGGAAAGTGCTAATAGAAATAGTAATAAAGATGATGATGATTCAAAGGCTAATAGTGATACTAATGTTGATGCTGATTCAAAGGCTGATAGTAGTGGAGATGCTGCTTTTGCAGAAGAATTAACTGAAATGCTTGAGTTTGATTCAAAGGCCGATACTAATAGAGATGATGATTCAAAGGCTAATAGTGATACTAATGTAGATGCTGATTCAAATGCTGATAGTAAGAATGGTGGAGATGCTGAGTTTGCAGAAGAATTAGCTGAAATGCTCGATTCTGATTCTAACGATGATAACTGA
Protein sequence
MCRSKFKIESKITKRQSDRILSPGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFFSLGRSEAGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSNKDDDDSKANSDTNVDADSKADSSGDAAFAEELTEMLEFDSKADTNRDDDSKANSDTNVDADSNADSKNGGDAEFAEELAEMLDSDSNDDN
Homology
BLAST of Sed0001415 vs. NCBI nr
Match:
KAG7029036.1 (hypothetical protein SDJN02_10219, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 184.5 bits (467), Expect = 1.4e-42
Identity = 105/219 (47.95%), Postives = 134/219 (61.19%), Query Frame = 0
Query: 20 ILSPGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCV 79
+L G VS A P N + CQEC I Q ECWI H + RR CTNCV
Sbjct: 16 VLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCV 75
Query: 80 LKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPN 139
L+N++ FCPVCF+VY+DSTA PP RV+C +CPSISH SCIS F S +LCPLCSDP+
Sbjct: 76 LRNNISRFCPVCFDVYDDSTA-PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPS 135
Query: 140 LAFF--------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVAD 199
FF L +SE AGR + KS+K +AAA +AA+SMR+A A ARA+A+
Sbjct: 136 FTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAE 195
Query: 200 KEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN 225
+I+ A A+K+A ALER A+++ EK E AN N +
Sbjct: 196 MKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGD 233
BLAST of Sed0001415 vs. NCBI nr
Match:
KAG6597592.1 (hypothetical protein SDJN03_10772, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 179.9 bits (455), Expect = 3.5e-41
Identity = 100/195 (51.28%), Postives = 127/195 (65.13%), Query Frame = 0
Query: 44 NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
N + CQEC I Q ECWI H + RR CTNCVL+N++ FCPVCF+VY+DSTA PP
Sbjct: 4 NSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA-PP 63
Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------ 163
RV+C +CPSISH SCIS F S +LCPLCSDP+ FF L +SE
Sbjct: 64 SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATL 123
Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
AGR + KS+K +AAA +AA+SMR+A A ARAVA+ +I+ A A+K+A ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183
Query: 224 QPEKVRKESANRNSN 225
EK E AN N +
Sbjct: 184 LEEKDGNEHANSNGD 197
BLAST of Sed0001415 vs. NCBI nr
Match:
XP_022943680.1 (uncharacterized protein LOC111448356 [Cucurbita moschata])
HSP 1 Score: 179.9 bits (455), Expect = 3.5e-41
Identity = 100/195 (51.28%), Postives = 127/195 (65.13%), Query Frame = 0
Query: 44 NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
N + CQEC I Q ECWI H + RR CTNCVL+N++ FCPVCF+VY+DSTA PP
Sbjct: 4 NSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA-PP 63
Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------ 163
RV+C +CPSISH SCIS F S +LCPLCSDP+ FF L +SE
Sbjct: 64 SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATL 123
Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
AGR + KS+K +AAA +AA+SMR+A A ARAVA+ +I+ A A+K+A ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183
Query: 224 QPEKVRKESANRNSN 225
EK E AN N +
Sbjct: 184 LEEKDGNEHANSNGD 197
BLAST of Sed0001415 vs. NCBI nr
Match:
XP_023540291.1 (uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 179.1 bits (453), Expect = 5.9e-41
Identity = 101/195 (51.79%), Postives = 128/195 (65.64%), Query Frame = 0
Query: 44 NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
N + CQEC I Q ECWI H + RR CTNCVL+N++ FCPVCF+VY+DSTA PP
Sbjct: 4 NSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA-PP 63
Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLG--RSE------ 163
RV+C +CPSISH SCIS F S +LCPLCSDP+ FF LG +SE
Sbjct: 64 SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGVCQSEYAVATL 123
Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
AGR + KS+K +AAA +AA+SMR+A A ARAVA+ +I+ A A+K+A ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183
Query: 224 QPEKVRKESANRNSN 225
EK E AN N +
Sbjct: 184 LEEKDGNEHANSNGD 197
BLAST of Sed0001415 vs. NCBI nr
Match:
XP_022955770.1 (uncharacterized protein LOC111457661 [Cucurbita moschata])
HSP 1 Score: 177.6 bits (449), Expect = 1.7e-40
Identity = 117/249 (46.99%), Postives = 143/249 (57.43%), Query Frame = 0
Query: 5 KFKIESKITKRQSDRI---------LSPGSDSRVS----AQATIPMDEPPH----KNPVP 64
+FKI++K K D GSDSRVS A A PM+ P + N +
Sbjct: 10 EFKIQTKRPKSPGDFFFFLVFTAPDFVAGSDSRVSVPANAAAVPPMNRPHYNHLQSNSIS 69
Query: 65 RCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDR 124
C EC I Q CWI H RR CTNCVLKN+L FCP+CF++Y+DST PP R
Sbjct: 70 NCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDST-PPSSHQR 129
Query: 125 VICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLGRSE------AGRIVD 184
V+C +CPSISH SC S F S +LCP+CSDP AFF L +SE AGR D
Sbjct: 130 VMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVAVLAGR--D 189
Query: 185 LKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVR 225
KS+K +AAA +AA+SMR+A A ARAVA+ +I AV A+K+A ALER AF+ EK R
Sbjct: 190 GKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALERLAFLVLQEKDR 249
BLAST of Sed0001415 vs. ExPASy TrEMBL
Match:
A0A6J1FY52 (uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC111448356 PE=4 SV=1)
HSP 1 Score: 179.9 bits (455), Expect = 1.7e-41
Identity = 100/195 (51.28%), Postives = 127/195 (65.13%), Query Frame = 0
Query: 44 NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
N + CQEC I Q ECWI H + RR CTNCVL+N++ FCPVCF+VY+DSTA PP
Sbjct: 4 NSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA-PP 63
Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------ 163
RV+C +CPSISH SCIS F S +LCPLCSDP+ FF L +SE
Sbjct: 64 SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATL 123
Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
AGR + KS+K +AAA +AA+SMR+A A ARAVA+ +I+ A A+K+A ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183
Query: 224 QPEKVRKESANRNSN 225
EK E AN N +
Sbjct: 184 LEEKDGNEHANSNGD 197
BLAST of Sed0001415 vs. ExPASy TrEMBL
Match:
A0A6J1I928 (uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781 PE=4 SV=1)
HSP 1 Score: 177.6 bits (449), Expect = 8.4e-41
Identity = 98/195 (50.26%), Postives = 126/195 (64.62%), Query Frame = 0
Query: 44 NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
N + CQEC I Q ECWI H + RR CTNC+L+N++ FCPVCF+VY+DSTA PP
Sbjct: 4 NSISHCQECGITQSECWILHNVRVKASFRRLCTNCILRNNISRFCPVCFDVYDDSTA-PP 63
Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------ 163
RV+C +CPSISH SCIS F S +LCPLCSDP+ FF L +SE
Sbjct: 64 SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATL 123
Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
AGR + KS+K +AAA +AA+SMR+A A ARAVA+ +I+ A A+K+A ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183
Query: 224 QPEKVRKESANRNSN 225
EK E N N +
Sbjct: 184 LEEKDGNEYGNSNGD 197
BLAST of Sed0001415 vs. ExPASy TrEMBL
Match:
A0A6J1GVZ7 (uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC111457661 PE=4 SV=1)
HSP 1 Score: 177.6 bits (449), Expect = 8.4e-41
Identity = 117/249 (46.99%), Postives = 143/249 (57.43%), Query Frame = 0
Query: 5 KFKIESKITKRQSDRI---------LSPGSDSRVS----AQATIPMDEPPH----KNPVP 64
+FKI++K K D GSDSRVS A A PM+ P + N +
Sbjct: 10 EFKIQTKRPKSPGDFFFFLVFTAPDFVAGSDSRVSVPANAAAVPPMNRPHYNHLQSNSIS 69
Query: 65 RCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDR 124
C EC I Q CWI H RR CTNCVLKN+L FCP+CF++Y+DST PP R
Sbjct: 70 NCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDST-PPSSHQR 129
Query: 125 VICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLGRSE------AGRIVD 184
V+C +CPSISH SC S F S +LCP+CSDP AFF L +SE AGR D
Sbjct: 130 VMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVAVLAGR--D 189
Query: 185 LKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVR 225
KS+K +AAA +AA+SMR+A A ARAVA+ +I AV A+K+A ALER AF+ EK R
Sbjct: 190 GKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALERLAFLVLQEKDR 249
BLAST of Sed0001415 vs. ExPASy TrEMBL
Match:
A0A6J1C9K9 (uncharacterized protein LOC111009209 OS=Momordica charantia OX=3673 GN=LOC111009209 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 2.4e-40
Identity = 105/217 (48.39%), Postives = 132/217 (60.83%), Query Frame = 0
Query: 27 SRVSA-QATIPMDEP---PHKN----PVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNC 86
SRVSA A P P PH+N P CQEC Q CWI H+ L RR CTNC
Sbjct: 69 SRVSAPPANAPPPPPMNRPHRNLLLHPNSHCQECGTSQSHCWILHHVRLKASFRRLCTNC 128
Query: 87 VLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDP 146
VLKN+L GFCPVCF+VY+DS +PPP RV+C +CPSISH SC+S F S +LC CSDP
Sbjct: 129 VLKNNLSGFCPVCFDVYDDS-SPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSHCSDP 188
Query: 147 NLAFF----SLGRSEAG--------RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADK 206
FF S S++G R+VD KS++ +AAA +AA+SMR+A A ARA A+
Sbjct: 189 RFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAET 248
Query: 207 EIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNS 224
+I+ A A+K+A ALER AF+ E+ R N+
Sbjct: 249 KIKNAAFAKKQATLALERLAFLVLQEEDRNGCVKSNN 284
BLAST of Sed0001415 vs. ExPASy TrEMBL
Match:
A0A0A0L5G4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)
HSP 1 Score: 170.6 bits (431), Expect = 1.0e-38
Identity = 106/231 (45.89%), Postives = 137/231 (59.31%), Query Frame = 0
Query: 25 SDSRVS--AQATIPMDEPPH-----KNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTN 84
S SRVS A AT+P H N + CQ+C I Q CWI H RR CTN
Sbjct: 51 SHSRVSVPANATVPPMNRQHSNHLQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTN 110
Query: 85 CVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSD 144
CVLK++L FCP+CF+VYEDST PPP RV+C +CPSISH SC+S F S +LCPLCSD
Sbjct: 111 CVLKHNLSRFCPLCFDVYEDST-PPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSD 170
Query: 145 PNLAFF-------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVA 204
P FF SL +SE AG+ VD KS K +AAA ++A+SMR+A ARAVA
Sbjct: 171 PRFVFFDGFDSGGSLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVA 230
Query: 205 DKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSNKDDDDSKANSD 236
+ +I+ A A+K+A ALE+ A++ EK + + N + D + K +
Sbjct: 231 EMKIKNAAFAKKQATLALEQLAYLVLQEKDKNGYSKSNGDAVDSERKVEEE 280
BLAST of Sed0001415 vs. TAIR 10
Match:
AT1G09520.1 (LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )
HSP 1 Score: 99.4 bits (246), Expect = 5.6e-21
Identity = 81/229 (35.37%), Postives = 108/229 (47.16%), Query Frame = 0
Query: 23 PGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKN 82
P S + S AT N RC +C + W+ H L +R FCT+C+L+N
Sbjct: 4 PSSTTATSTSAT----SDAAANSTERCDDC--GSSDAWVIHTVRLRASLRFFCTHCLLRN 63
Query: 83 SLDGFCPVCFEVYEDSTAPPPCPDRVICS--KCPSISHRSCISSGFDSAYLCPLCSDPN- 142
FCP CF +Y+ S PP RV CS C S++H C +YLCP C DPN
Sbjct: 64 HPASFCPGCFALYDSS---PPSFRRVSCSIKGCHSLTHIHCAGDESHLSYLCPPCRDPNS 123
Query: 143 LAFFSLGRSEAG-RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEA 202
+FF E G R VD S+ FL AA +AA SM KAV A+ D+ + A +A+K A
Sbjct: 124 FSFFRPIVDENGSRFVDKALSEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRA 183
Query: 203 IRALERFAFIDQPEKVRKESANRNSNKDDDDSKANSDTNVDADSKADSS 248
ALE+ +D EK R D K + +N + +SS
Sbjct: 184 REALEQVVMLDAKEKARSVVPKLKEAPVDQKPKLSPASNGATVKETESS 223
BLAST of Sed0001415 vs. TAIR 10
Match:
AT3G17460.1 (PHD finger family protein )
HSP 1 Score: 65.1 bits (157), Expect = 1.2e-10
Identity = 63/204 (30.88%), Postives = 92/204 (45.10%), Query Frame = 0
Query: 44 NPVPRCQECYI-PQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPP 103
NP + +EC + + E H + RR CT+C+LK + FC VCF ++ D+ PP
Sbjct: 2 NPEQKQRECIVCREKEPSFIHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLF-DNAVPP 61
Query: 104 PCPDRVICSKCPSISHRSC---------ISSGFD-----SAYLCPLCSDPNLAFFSLGRS 163
R+IC CPS +H SC SS S++ C CS+PN FF R
Sbjct: 62 QA--RIICVNCPSSTHLSCSTQPPSSSAASSSSSAPPPASSFTCQPCSNPNFTFFPKSRV 121
Query: 164 EAG----RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALER 223
+ KS+ +AA ++ +M KAVA + A K+I A A+ A AL
Sbjct: 122 NEDVPDETPLTPKSAMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGALTN 181
Query: 224 FAFIDQPEKVRKESANRNSNKDDD 229
I V ++S K+D+
Sbjct: 182 LQDI-----VIRQSKVTGKRKEDE 197
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7029036.1 | 1.4e-42 | 47.95 | hypothetical protein SDJN02_10219, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6597592.1 | 3.5e-41 | 51.28 | hypothetical protein SDJN03_10772, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022943680.1 | 3.5e-41 | 51.28 | uncharacterized protein LOC111448356 [Cucurbita moschata] | [more] |
XP_023540291.1 | 5.9e-41 | 51.79 | uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo] | [more] |
XP_022955770.1 | 1.7e-40 | 46.99 | uncharacterized protein LOC111457661 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1FY52 | 1.7e-41 | 51.28 | uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC1114483... | [more] |
A0A6J1I928 | 8.4e-41 | 50.26 | uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781... | [more] |
A0A6J1GVZ7 | 8.4e-41 | 46.99 | uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC1114576... | [more] |
A0A6J1C9K9 | 2.4e-40 | 48.39 | uncharacterized protein LOC111009209 OS=Momordica charantia OX=3673 GN=LOC111009... | [more] |
A0A0A0L5G4 | 1.0e-38 | 45.89 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G09520.1 | 5.6e-21 | 35.37 | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12... | [more] |
AT3G17460.1 | 1.2e-10 | 30.88 | PHD finger family protein | [more] |