Sed0001415 (gene) Chayote v1

Overview
NameSed0001415
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDNA binding protein
LocationLG12: 4388018 .. 4388984 (+)
RNA-Seq ExpressionSed0001415
SyntenySed0001415
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAGATCGAAGTTCAAAATTGAAAGCAAAATTACCAAACGCCAAAGTTTCTGTTTCTCTTCTTCAAGGTGATCGGATTCTCTCACCGGGCTCCGATTCTAGGGTTTCAGCTCAGGCGACTATTCCGATGGATGAGCCGCCGCACAAGAATCCCGTTCCTCGGTGCCAAGAATGCTACATTCCTCAGTTCGAGTGCTGGATCCGCCACTATTTTCTACTCAACTTGTACATCCGCCGTTTCTGCACGAATTGCGTCCTCAAGAACAGTCTCGACGGTTTCTGTCCCGTTTGCTTCGAGGTTTACGAAGATTCGACTGCGCCGCCGCCGTGTCCTGACCGGGTAATTTGCTCGAAATGTCCTTCGATTTCTCATCGATCTTGCATTTCTTCTGGTTTTGATTCTGCGTATCTGTGTCCTCTCTGCTCCGATCCTAATCTCGCCTTCTTTAGTCTTGGCCGATCGGAGGCCGGGAGGATTGTTGATCTTAAATCGTCGAAGGTGTTTCTTGCTGCCGCTACTCTTGCCGCTCGGTCGATGCGAAAAGCCGTGGCTGGCGCTAGGGCTGTAGCGGATAAGGAGATCGAGATGGCTGTGATTGCTAGGAAGGAGGCTATTCGCGCGTTGGAGCGATTTGCTTTTATTGATCAACCGGAGAAAGTTAGAAAGGAAAGTGCTAATAGAAATAGTAATAAAGATGATGATGATTCAAAGGCTAATAGTGATACTAATGTTGATGCTGATTCAAAGGCTGATAGTAGTGGAGATGCTGCTTTTGCAGAAGAATTAACTGAAATGCTTGAGTTTGATTCAAAGGCCGATACTAATAGAGATGATGATTCAAAGGCTAATAGTGATACTAATGTAGATGCTGATTCAAATGCTGATAGTAAGAATGGTGGAGATGCTGAGTTTGCAGAAGAATTAGCTGAAATGCTCGATTCTGATTCTAACGATGATAACTGA

mRNA sequence

ATGTGCAGATCGAAGTTCAAAATTGAAAGCAAAATTACCAAACGCCAAAGTGATCGGATTCTCTCACCGGGCTCCGATTCTAGGGTTTCAGCTCAGGCGACTATTCCGATGGATGAGCCGCCGCACAAGAATCCCGTTCCTCGGTGCCAAGAATGCTACATTCCTCAGTTCGAGTGCTGGATCCGCCACTATTTTCTACTCAACTTGTACATCCGCCGTTTCTGCACGAATTGCGTCCTCAAGAACAGTCTCGACGGTTTCTGTCCCGTTTGCTTCGAGGTTTACGAAGATTCGACTGCGCCGCCGCCGTGTCCTGACCGGGTAATTTGCTCGAAATGTCCTTCGATTTCTCATCGATCTTGCATTTCTTCTGGTTTTGATTCTGCGTATCTGTGTCCTCTCTGCTCCGATCCTAATCTCGCCTTCTTTAGTCTTGGCCGATCGGAGGCCGGGAGGATTGTTGATCTTAAATCGTCGAAGGTGTTTCTTGCTGCCGCTACTCTTGCCGCTCGGTCGATGCGAAAAGCCGTGGCTGGCGCTAGGGCTGTAGCGGATAAGGAGATCGAGATGGCTGTGATTGCTAGGAAGGAGGCTATTCGCGCGTTGGAGCGATTTGCTTTTATTGATCAACCGGAGAAAGTTAGAAAGGAAAGTGCTAATAGAAATAGTAATAAAGATGATGATGATTCAAAGGCTAATAGTGATACTAATGTTGATGCTGATTCAAAGGCTGATAGTAGTGGAGATGCTGCTTTTGCAGAAGAATTAACTGAAATGCTTGAGTTTGATTCAAAGGCCGATACTAATAGAGATGATGATTCAAAGGCTAATAGTGATACTAATGTAGATGCTGATTCAAATGCTGATAGTAAGAATGGTGGAGATGCTGAGTTTGCAGAAGAATTAGCTGAAATGCTCGATTCTGATTCTAACGATGATAACTGA

Coding sequence (CDS)

ATGTGCAGATCGAAGTTCAAAATTGAAAGCAAAATTACCAAACGCCAAAGTGATCGGATTCTCTCACCGGGCTCCGATTCTAGGGTTTCAGCTCAGGCGACTATTCCGATGGATGAGCCGCCGCACAAGAATCCCGTTCCTCGGTGCCAAGAATGCTACATTCCTCAGTTCGAGTGCTGGATCCGCCACTATTTTCTACTCAACTTGTACATCCGCCGTTTCTGCACGAATTGCGTCCTCAAGAACAGTCTCGACGGTTTCTGTCCCGTTTGCTTCGAGGTTTACGAAGATTCGACTGCGCCGCCGCCGTGTCCTGACCGGGTAATTTGCTCGAAATGTCCTTCGATTTCTCATCGATCTTGCATTTCTTCTGGTTTTGATTCTGCGTATCTGTGTCCTCTCTGCTCCGATCCTAATCTCGCCTTCTTTAGTCTTGGCCGATCGGAGGCCGGGAGGATTGTTGATCTTAAATCGTCGAAGGTGTTTCTTGCTGCCGCTACTCTTGCCGCTCGGTCGATGCGAAAAGCCGTGGCTGGCGCTAGGGCTGTAGCGGATAAGGAGATCGAGATGGCTGTGATTGCTAGGAAGGAGGCTATTCGCGCGTTGGAGCGATTTGCTTTTATTGATCAACCGGAGAAAGTTAGAAAGGAAAGTGCTAATAGAAATAGTAATAAAGATGATGATGATTCAAAGGCTAATAGTGATACTAATGTTGATGCTGATTCAAAGGCTGATAGTAGTGGAGATGCTGCTTTTGCAGAAGAATTAACTGAAATGCTTGAGTTTGATTCAAAGGCCGATACTAATAGAGATGATGATTCAAAGGCTAATAGTGATACTAATGTAGATGCTGATTCAAATGCTGATAGTAAGAATGGTGGAGATGCTGAGTTTGCAGAAGAATTAGCTGAAATGCTCGATTCTGATTCTAACGATGATAACTGA

Protein sequence

MCRSKFKIESKITKRQSDRILSPGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFFSLGRSEAGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSNKDDDDSKANSDTNVDADSKADSSGDAAFAEELTEMLEFDSKADTNRDDDSKANSDTNVDADSNADSKNGGDAEFAEELAEMLDSDSNDDN
Homology
BLAST of Sed0001415 vs. NCBI nr
Match: KAG7029036.1 (hypothetical protein SDJN02_10219, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-42
Identity = 105/219 (47.95%), Postives = 134/219 (61.19%), Query Frame = 0

Query: 20  ILSPGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCV 79
           +L  G    VS  A      P   N +  CQEC I Q ECWI H   +    RR CTNCV
Sbjct: 16  VLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCV 75

Query: 80  LKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPN 139
           L+N++  FCPVCF+VY+DSTA PP   RV+C +CPSISH SCIS  F S +LCPLCSDP+
Sbjct: 76  LRNNISRFCPVCFDVYDDSTA-PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPS 135

Query: 140 LAFF--------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVAD 199
             FF         L +SE      AGR +  KS+K  +AAA +AA+SMR+A A ARA+A+
Sbjct: 136 FTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAE 195

Query: 200 KEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN 225
            +I+ A  A+K+A  ALER A+++  EK   E AN N +
Sbjct: 196 MKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGD 233

BLAST of Sed0001415 vs. NCBI nr
Match: KAG6597592.1 (hypothetical protein SDJN03_10772, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.9 bits (455), Expect = 3.5e-41
Identity = 100/195 (51.28%), Postives = 127/195 (65.13%), Query Frame = 0

Query: 44  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
           N +  CQEC I Q ECWI H   +    RR CTNCVL+N++  FCPVCF+VY+DSTA PP
Sbjct: 4   NSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA-PP 63

Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------ 163
              RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF         L +SE      
Sbjct: 64  SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATL 123

Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
           AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183

Query: 224 QPEKVRKESANRNSN 225
             EK   E AN N +
Sbjct: 184 LEEKDGNEHANSNGD 197

BLAST of Sed0001415 vs. NCBI nr
Match: XP_022943680.1 (uncharacterized protein LOC111448356 [Cucurbita moschata])

HSP 1 Score: 179.9 bits (455), Expect = 3.5e-41
Identity = 100/195 (51.28%), Postives = 127/195 (65.13%), Query Frame = 0

Query: 44  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
           N +  CQEC I Q ECWI H   +    RR CTNCVL+N++  FCPVCF+VY+DSTA PP
Sbjct: 4   NSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA-PP 63

Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------ 163
              RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF         L +SE      
Sbjct: 64  SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATL 123

Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
           AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183

Query: 224 QPEKVRKESANRNSN 225
             EK   E AN N +
Sbjct: 184 LEEKDGNEHANSNGD 197

BLAST of Sed0001415 vs. NCBI nr
Match: XP_023540291.1 (uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.1 bits (453), Expect = 5.9e-41
Identity = 101/195 (51.79%), Postives = 128/195 (65.64%), Query Frame = 0

Query: 44  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
           N +  CQEC I Q ECWI H   +    RR CTNCVL+N++  FCPVCF+VY+DSTA PP
Sbjct: 4   NSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA-PP 63

Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLG--RSE------ 163
              RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF       LG  +SE      
Sbjct: 64  SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGVCQSEYAVATL 123

Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
           AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183

Query: 224 QPEKVRKESANRNSN 225
             EK   E AN N +
Sbjct: 184 LEEKDGNEHANSNGD 197

BLAST of Sed0001415 vs. NCBI nr
Match: XP_022955770.1 (uncharacterized protein LOC111457661 [Cucurbita moschata])

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-40
Identity = 117/249 (46.99%), Postives = 143/249 (57.43%), Query Frame = 0

Query: 5   KFKIESKITKRQSDRI---------LSPGSDSRVS----AQATIPMDEPPH----KNPVP 64
           +FKI++K  K   D              GSDSRVS    A A  PM+ P +     N + 
Sbjct: 10  EFKIQTKRPKSPGDFFFFLVFTAPDFVAGSDSRVSVPANAAAVPPMNRPHYNHLQSNSIS 69

Query: 65  RCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDR 124
            C EC I Q  CWI H        RR CTNCVLKN+L  FCP+CF++Y+DST PP    R
Sbjct: 70  NCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDST-PPSSHQR 129

Query: 125 VICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLGRSE------AGRIVD 184
           V+C +CPSISH SC S  F S +LCP+CSDP  AFF       L +SE      AGR  D
Sbjct: 130 VMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVAVLAGR--D 189

Query: 185 LKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVR 225
            KS+K  +AAA +AA+SMR+A A ARAVA+ +I  AV A+K+A  ALER AF+   EK R
Sbjct: 190 GKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALERLAFLVLQEKDR 249

BLAST of Sed0001415 vs. ExPASy TrEMBL
Match: A0A6J1FY52 (uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC111448356 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-41
Identity = 100/195 (51.28%), Postives = 127/195 (65.13%), Query Frame = 0

Query: 44  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
           N +  CQEC I Q ECWI H   +    RR CTNCVL+N++  FCPVCF+VY+DSTA PP
Sbjct: 4   NSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA-PP 63

Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------ 163
              RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF         L +SE      
Sbjct: 64  SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATL 123

Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
           AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183

Query: 224 QPEKVRKESANRNSN 225
             EK   E AN N +
Sbjct: 184 LEEKDGNEHANSNGD 197

BLAST of Sed0001415 vs. ExPASy TrEMBL
Match: A0A6J1I928 (uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.4e-41
Identity = 98/195 (50.26%), Postives = 126/195 (64.62%), Query Frame = 0

Query: 44  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPP 103
           N +  CQEC I Q ECWI H   +    RR CTNC+L+N++  FCPVCF+VY+DSTA PP
Sbjct: 4   NSISHCQECGITQSECWILHNVRVKASFRRLCTNCILRNNISRFCPVCFDVYDDSTA-PP 63

Query: 104 CPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------ 163
              RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF         L +SE      
Sbjct: 64  SHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATL 123

Query: 164 AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFID 223
           AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++
Sbjct: 124 AGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLE 183

Query: 224 QPEKVRKESANRNSN 225
             EK   E  N N +
Sbjct: 184 LEEKDGNEYGNSNGD 197

BLAST of Sed0001415 vs. ExPASy TrEMBL
Match: A0A6J1GVZ7 (uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC111457661 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 8.4e-41
Identity = 117/249 (46.99%), Postives = 143/249 (57.43%), Query Frame = 0

Query: 5   KFKIESKITKRQSDRI---------LSPGSDSRVS----AQATIPMDEPPH----KNPVP 64
           +FKI++K  K   D              GSDSRVS    A A  PM+ P +     N + 
Sbjct: 10  EFKIQTKRPKSPGDFFFFLVFTAPDFVAGSDSRVSVPANAAAVPPMNRPHYNHLQSNSIS 69

Query: 65  RCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDR 124
            C EC I Q  CWI H        RR CTNCVLKN+L  FCP+CF++Y+DST PP    R
Sbjct: 70  NCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDST-PPSSHQR 129

Query: 125 VICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLGRSE------AGRIVD 184
           V+C +CPSISH SC S  F S +LCP+CSDP  AFF       L +SE      AGR  D
Sbjct: 130 VMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVAVLAGR--D 189

Query: 185 LKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVR 225
            KS+K  +AAA +AA+SMR+A A ARAVA+ +I  AV A+K+A  ALER AF+   EK R
Sbjct: 190 GKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALERLAFLVLQEKDR 249

BLAST of Sed0001415 vs. ExPASy TrEMBL
Match: A0A6J1C9K9 (uncharacterized protein LOC111009209 OS=Momordica charantia OX=3673 GN=LOC111009209 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-40
Identity = 105/217 (48.39%), Postives = 132/217 (60.83%), Query Frame = 0

Query: 27  SRVSA-QATIPMDEP---PHKN----PVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNC 86
           SRVSA  A  P   P   PH+N    P   CQEC   Q  CWI H+  L    RR CTNC
Sbjct: 69  SRVSAPPANAPPPPPMNRPHRNLLLHPNSHCQECGTSQSHCWILHHVRLKASFRRLCTNC 128

Query: 87  VLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDP 146
           VLKN+L GFCPVCF+VY+DS +PPP   RV+C +CPSISH SC+S  F S +LC  CSDP
Sbjct: 129 VLKNNLSGFCPVCFDVYDDS-SPPPSHQRVMCFRCPSISHFSCVSVHFSSTFLCSHCSDP 188

Query: 147 NLAFF----SLGRSEAG--------RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADK 206
              FF    S   S++G        R+VD KS++  +AAA +AA+SMR+A A ARA A+ 
Sbjct: 189 RFTFFDGFHSAALSQSGSAAVLADNRVVDCKSARAIVAAARVAAQSMRRAAADARAAAET 248

Query: 207 EIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNS 224
           +I+ A  A+K+A  ALER AF+   E+ R      N+
Sbjct: 249 KIKNAAFAKKQATLALERLAFLVLQEEDRNGCVKSNN 284

BLAST of Sed0001415 vs. ExPASy TrEMBL
Match: A0A0A0L5G4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-38
Identity = 106/231 (45.89%), Postives = 137/231 (59.31%), Query Frame = 0

Query: 25  SDSRVS--AQATIPMDEPPH-----KNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTN 84
           S SRVS  A AT+P     H      N +  CQ+C I Q  CWI H        RR CTN
Sbjct: 51  SHSRVSVPANATVPPMNRQHSNHLQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTN 110

Query: 85  CVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSD 144
           CVLK++L  FCP+CF+VYEDST PPP   RV+C +CPSISH SC+S  F S +LCPLCSD
Sbjct: 111 CVLKHNLSRFCPLCFDVYEDST-PPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSD 170

Query: 145 PNLAFF-------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVA 204
           P   FF       SL +SE      AG+ VD KS K  +AAA ++A+SMR+A   ARAVA
Sbjct: 171 PRFVFFDGFDSGGSLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVA 230

Query: 205 DKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSNKDDDDSKANSD 236
           + +I+ A  A+K+A  ALE+ A++   EK +   +  N +  D + K   +
Sbjct: 231 EMKIKNAAFAKKQATLALEQLAYLVLQEKDKNGYSKSNGDAVDSERKVEEE 280

BLAST of Sed0001415 vs. TAIR 10
Match: AT1G09520.1 (LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 5.6e-21
Identity = 81/229 (35.37%), Postives = 108/229 (47.16%), Query Frame = 0

Query: 23  PGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKN 82
           P S +  S  AT         N   RC +C     + W+ H   L   +R FCT+C+L+N
Sbjct: 4   PSSTTATSTSAT----SDAAANSTERCDDC--GSSDAWVIHTVRLRASLRFFCTHCLLRN 63

Query: 83  SLDGFCPVCFEVYEDSTAPPPCPDRVICS--KCPSISHRSCISSGFDSAYLCPLCSDPN- 142
               FCP CF +Y+ S   PP   RV CS   C S++H  C       +YLCP C DPN 
Sbjct: 64  HPASFCPGCFALYDSS---PPSFRRVSCSIKGCHSLTHIHCAGDESHLSYLCPPCRDPNS 123

Query: 143 LAFFSLGRSEAG-RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEA 202
            +FF     E G R VD   S+ FL AA +AA SM KAV  A+   D+  + A +A+K A
Sbjct: 124 FSFFRPIVDENGSRFVDKALSEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRA 183

Query: 203 IRALERFAFIDQPEKVRKESANRNSNKDDDDSKANSDTNVDADSKADSS 248
             ALE+   +D  EK R           D   K +  +N     + +SS
Sbjct: 184 REALEQVVMLDAKEKARSVVPKLKEAPVDQKPKLSPASNGATVKETESS 223

BLAST of Sed0001415 vs. TAIR 10
Match: AT3G17460.1 (PHD finger family protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-10
Identity = 63/204 (30.88%), Postives = 92/204 (45.10%), Query Frame = 0

Query: 44  NPVPRCQECYI-PQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPP 103
           NP  + +EC +  + E    H  +     RR CT+C+LK   + FC VCF ++ D+  PP
Sbjct: 2   NPEQKQRECIVCREKEPSFIHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLF-DNAVPP 61

Query: 104 PCPDRVICSKCPSISHRSC---------ISSGFD-----SAYLCPLCSDPNLAFFSLGRS 163
               R+IC  CPS +H SC          SS        S++ C  CS+PN  FF   R 
Sbjct: 62  QA--RIICVNCPSSTHLSCSTQPPSSSAASSSSSAPPPASSFTCQPCSNPNFTFFPKSRV 121

Query: 164 EAG----RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALER 223
                    +  KS+   +AA  ++  +M KAVA  +  A K+I  A  A+  A  AL  
Sbjct: 122 NEDVPDETPLTPKSAMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGALTN 181

Query: 224 FAFIDQPEKVRKESANRNSNKDDD 229
              I     V ++S      K+D+
Sbjct: 182 LQDI-----VIRQSKVTGKRKEDE 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7029036.11.4e-4247.95hypothetical protein SDJN02_10219, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597592.13.5e-4151.28hypothetical protein SDJN03_10772, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022943680.13.5e-4151.28uncharacterized protein LOC111448356 [Cucurbita moschata][more]
XP_023540291.15.9e-4151.79uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo][more]
XP_022955770.11.7e-4046.99uncharacterized protein LOC111457661 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FY521.7e-4151.28uncharacterized protein LOC111448356 OS=Cucurbita moschata OX=3662 GN=LOC1114483... [more]
A0A6J1I9288.4e-4150.26uncharacterized protein LOC111470781 OS=Cucurbita maxima OX=3661 GN=LOC111470781... [more]
A0A6J1GVZ78.4e-4146.99uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC1114576... [more]
A0A6J1C9K92.4e-4048.39uncharacterized protein LOC111009209 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0L5G41.0e-3845.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G09520.15.6e-2135.37LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12... [more]
AT3G17460.11.2e-1030.88PHD finger family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 258..279
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..314
NoneNo IPR availablePANTHERPTHR34451PHD FINGER FAMILY PROTEINcoord: 39..284
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 88..136
score: 8.638745

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001415.1Sed0001415.1mRNA