Sed0001388 (gene) Chayote v1

Overview


Name	Sed0001388
Type	gene
Organism	Sechium edule (Chayote v1)
Description	beta-glucosidase 12-like
Location	LG08: 13836115 .. 13836583 (-)
RNA-Seq Expression	Sed0001388
Synteny	Sed0001388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGGAAGGATATGTTGTGAGAAAGCTTGTTGTTCTTATTCTGGTTATTGGTGCAAGTGGAAGCTCTAGCTATGGTGTTGAGTCTAATTTGAATAGAAGTAGTTTTCCTCAAGGCTTTCTTTTTGGAACAGCTTCAACTTCTTACCAAGTGAGTTTTAATTTTCATTTCTAGCCATTGTTGAAATAATTGTAACACCCCACAAAATAGTTTAATCTAAGGATCGCTATCAACTATTACCACACTGTCTCGAGAATTATGTCCCAAAAATTTCGGCAGCATGATATTTTTGTAACCTAATCTAAGGATTTACACTAATTTTCATTTGTAGCCATTGTTAAAATGTAATTCTAAGTGAGATGCTTCTTTGTTTAATTGATTATATTATTTTGTTTTGTTGGTTTGTTGTGGTTTTTTTTAGTATGAAGGTGCTGCAAATGAAGATGGTAGAGGGCCAAGTATTTAG

mRNA sequence

ATGGGTTTGGAAGGATATGTTGTGAGAAAGCTTGTTGTTCTTATTCTGGTTATTGGTGCAAGTGGAAGCTCTAGCTATGGTGTTGAGTCTAATTTGAATAGAAGTAGTTTTCCTCAAGGCTTTCTTTTTGGAACAGCTTCAACTTCTTACCAATATGAAGGTGCTGCAAATGAAGATGGTAGAGGGCCAAGTATTTAG

Coding sequence (CDS)

ATGGGTTTGGAAGGATATGTTGTGAGAAAGCTTGTTGTTCTTATTCTGGTTATTGGTGCAAGTGGAAGCTCTAGCTATGGTGTTGAGTCTAATTTGAATAGAAGTAGTTTTCCTCAAGGCTTTCTTTTTGGAACAGCTTCAACTTCTTACCAATATGAAGGTGCTGCAAATGAAGATGGTAGAGGGCCAAGTATTTAG

Protein sequence

MGLEGYVVRKLVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPSI

Homology

[Close]

BLAST of Sed0001388 vs. NCBI nr
Match: XP_038878464.1 (beta-glucosidase 12-like [Benincasa hispida])

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MGLEGYVVRKLVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDG 60
          MGL GY+V KLVV ILV+GA G+ +Y VESNLNR+SFP+GF+FGTAS++YQYEGAANEDG
Sbjct: 1  MGLRGYIVAKLVVFILVVGARGNPNYDVESNLNRNSFPKGFVFGTASSAYQYEGAANEDG 60

Query: 61 RGPSI 66
          RGPSI
Sbjct: 61 RGPSI 65

[Close]

BLAST of Sed0001388 vs. NCBI nr
Match: XP_008450458.1 (PREDICTED: beta-glucosidase 12-like [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 43/65 (66.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MGLEGYVVRKLVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDG 60
          MGL+GY+V  L  +++V+  SG+++YGVESNLNR+SFPQGF+FG+AS++YQYEGAAN+DG
Sbjct: 1  MGLKGYLVVNLAFILVVV--SGNNNYGVESNLNRNSFPQGFVFGSASSAYQYEGAANKDG 60

Query: 61 RGPSI 66
          R PSI
Sbjct: 61 RRPSI 63

[Close]

BLAST of Sed0001388 vs. NCBI nr
Match: XP_022154096.1 (beta-glucosidase 12-like [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 2.2e-14
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MGLEGYVVRKLVVLIL-----VIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGA 60
          M +EG ++R+L++L+L     V G  G+ SYGVES LNRSSFPQGF+FGTAS++YQYEGA
Sbjct: 1  MAMEGNLLRELLLLLLLHILVVAGVGGNPSYGVES-LNRSSFPQGFVFGTASSAYQYEGA 60

Query: 61 ANEDGRGPSI 66
          ANEDGRGPSI
Sbjct: 61 ANEDGRGPSI 69

[Close]

BLAST of Sed0001388 vs. NCBI nr
Match: XP_011660110.2 (beta-glucosidase 12 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MGLEGYVVRKLVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDG 60
          M L+GY+V KL   ILV   SG++SYGV+SNLNR+SFPQGF+FG+AS+SYQYEGAAN+DG
Sbjct: 27 MDLKGYLVVKL-AFILVGVVSGNNSYGVDSNLNRNSFPQGFVFGSASSSYQYEGAANKDG 86

Query: 61 RGPSI 66
          R PSI
Sbjct: 87 RRPSI 90

[Close]

BLAST of Sed0001388 vs. NCBI nr
Match: KGN66450.1 (hypothetical protein Csa_006862 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MGLEGYVVRKLVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDG 60
          M L+GY+V KL   ILV   SG++SYGV+SNLNR+SFPQGF+FG+AS+SYQYEGAAN+DG
Sbjct: 9  MDLKGYLVVKL-AFILVGVVSGNNSYGVDSNLNRNSFPQGFVFGSASSSYQYEGAANKDG 68

Query: 61 RGPSI 66
          R PSI
Sbjct: 69 RRPSI 72

[Close]

BLAST of Sed0001388 vs. ExPASy Swiss-Prot
Match: Q339X2 (Beta-glucosidase 34 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU34 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-10
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 7  VVRKLVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPSI 66
          +V  +++L+L+  + G  +      L R SFP GF+FGTAS++YQYEGA  EDGRGP+I
Sbjct: 8  MVEVVILLVLMAMSQGCDAQNTTGGLTRKSFPNGFVFGTASSAYQYEGAVKEDGRGPTI 66

[Close]

BLAST of Sed0001388 vs. ExPASy Swiss-Prot
Match: B8AVF0 (Beta-glucosidase 12 OS=Oryza sativa subsp. indica OX=39946 GN=BGLU12 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.9e-10
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 11 LVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPSI 66
          L  L+L + ASG+ +   E  ++R SFP+GF+FGTAS+SYQYEG A E GRGPSI
Sbjct: 13 LTFLLLAVVASGAYNSAGEPPVSRRSFPKGFIFGTASSSYQYEGGAAEGGRGPSI 67

[Close]

BLAST of Sed0001388 vs. ExPASy Swiss-Prot
Match: Q7XKV4 (Beta-glucosidase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU12 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-09
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 11 LVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPSI 66
          L  L+L + ASG+ +   E  ++R SFP+GF+FGTAS+SYQYEG A E GRGPSI
Sbjct: 13 LTFLLLAVVASGAYNGAGEPPVSRRSFPKGFIFGTASSSYQYEGGAAEGGRGPSI 67

[Close]

BLAST of Sed0001388 vs. ExPASy Swiss-Prot
Match: Q7XKV2 (Beta-glucosidase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU13 PE=2 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 11 LVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPSI 66
          L+ L+LV+  SG         ++R SFP+GF+FGTAS+SYQYEG A E GRGPSI
Sbjct: 14 LLPLLLVVAVSGE-----PPPISRRSFPEGFIFGTASSSYQYEGGAREGGRGPSI 63

[Close]

BLAST of Sed0001388 vs. ExPASy Swiss-Prot
Match: Q8L7J2 (Beta-glucosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU6 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-08
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 11 LVVLILVIGASGSSSYGV-----ESNLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPSI 66
          + VL++V G + SS  G         L R SFP+GF+FGTAS +YQYEGA  EDGRG +I
Sbjct: 19 VAVLVVVFGVASSSLRGCIAQQSGGGLTRGSFPEGFVFGTASAAYQYEGAVKEDGRGQTI 78

[Close]

BLAST of Sed0001388 vs. ExPASy TrEMBL
Match: A0A1S3BPX7 (beta-glucosidase 12-like OS=Cucumis melo OX=3656 GN=LOC103492053 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.2e-15
Identity = 43/65 (66.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MGLEGYVVRKLVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDG 60
          MGL+GY+V  L  +++V+  SG+++YGVESNLNR+SFPQGF+FG+AS++YQYEGAAN+DG
Sbjct: 1  MGLKGYLVVNLAFILVVV--SGNNNYGVESNLNRNSFPQGFVFGSASSAYQYEGAANKDG 60

Query: 61 RGPSI 66
          R PSI
Sbjct: 61 RRPSI 63

[Close]

BLAST of Sed0001388 vs. ExPASy TrEMBL
Match: A0A6J1DMP4 (beta-glucosidase 12-like OS=Momordica charantia OX=3673 GN=LOC111021432 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MGLEGYVVRKLVVLIL-----VIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGA 60
          M +EG ++R+L++L+L     V G  G+ SYGVES LNRSSFPQGF+FGTAS++YQYEGA
Sbjct: 1  MAMEGNLLRELLLLLLLHILVVAGVGGNPSYGVES-LNRSSFPQGFVFGTASSAYQYEGA 60

Query: 61 ANEDGRGPSI 66
          ANEDGRGPSI
Sbjct: 61 ANEDGRGPSI 69

[Close]

BLAST of Sed0001388 vs. ExPASy TrEMBL
Match: A0A0A0LX61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G611270 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MGLEGYVVRKLVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDG 60
          M L+GY+V KL   ILV   SG++SYGV+SNLNR+SFPQGF+FG+AS+SYQYEGAAN+DG
Sbjct: 9  MDLKGYLVVKL-AFILVGVVSGNNSYGVDSNLNRNSFPQGFVFGSASSSYQYEGAANKDG 68

Query: 61 RGPSI 66
          R PSI
Sbjct: 69 RRPSI 72

[Close]

BLAST of Sed0001388 vs. ExPASy TrEMBL
Match: A0A6J1EIY3 (beta-glucosidase 12-like OS=Cucurbita moschata OX=3662 GN=LOC111434571 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 1  MGLEGYVVRKLVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDG 60
          MG    +V +++VL+LV  ASG+ S+GVE  LNRS FP GF+FGTAS++YQYEGAAN DG
Sbjct: 1  MGKLVLLVLRVLVLVLV-RASGNPSHGVEFTLNRSCFPHGFVFGTASSAYQYEGAANTDG 60

Query: 61 RGPSI 66
          RGPSI
Sbjct: 61 RGPSI 64

[Close]

BLAST of Sed0001388 vs. ExPASy TrEMBL
Match: F6GUD3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g01420 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 1   MGLEGYVVRKLVVLIL-----VIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGA 60
           M ++GY + +L +L+L     +I AS + +YG  + LNRSSFP+GF+FGTAS SYQYEGA
Sbjct: 149 MAMQGYFILRLFLLLLLSSVGIIKASDTPNYGT-ALLNRSSFPEGFIFGTASASYQYEGA 208

Query: 61  ANEDGRGPSI 66
           A EDGRGPSI
Sbjct: 209 AYEDGRGPSI 217

[Close]

BLAST of Sed0001388 vs. TAIR 10
Match: AT3G18080.1 (B-S glucosidase 44 )

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-09
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 11 LVVLILVIGASGSSSYGVESN------LNRSSFPQGFLFGTASTSYQYEGAANEDGRGPS 66
          L++L+L    SG SS   E N      L+R SFP+GF+FGTA+++YQ EG  ++DGRGPS
Sbjct: 12 LLLLLLSSFTSGESSLSAEKNKLHTGGLSRQSFPKGFVFGTATSAYQVEGETHQDGRGPS 71

[Close]

BLAST of Sed0001388 vs. TAIR 10
Match: AT2G44490.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 25 SYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPSI 66
          ++  E +  R+SFP+GFLFGTAS+SYQYEGA NE  RG S+
Sbjct: 7  TFPTEMSKGRASFPKGFLFGTASSSYQYEGAVNEGARGQSV 47

[Close]

BLAST of Sed0001388 vs. TAIR 10
Match: AT3G18070.1 (beta glucosidase 43 )

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 11 LVVLILVIGASGSSSYGVES------NLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPS 66
          L +L+L    SG  S   ++       LNR SFP+GFLFGTA+++YQ EG  ++DGRGPS
Sbjct: 3  LFLLLLSASRSGEESPSGDAVPLATGGLNRKSFPEGFLFGTATSAYQVEGETHQDGRGPS 62

[Close]

BLAST of Sed0001388 vs. TAIR 10
Match: AT3G18070.2 (beta glucosidase 43 )

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 11 LVVLILVIGASGSSSYGVES------NLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPS 66
          L +L+L    SG  S   ++       LNR SFP+GFLFGTA+++YQ EG  ++DGRGPS
Sbjct: 3  LFLLLLSASRSGEESPSGDAVPLATGGLNRKSFPEGFLFGTATSAYQVEGETHQDGRGPS 62

[Close]

BLAST of Sed0001388 vs. TAIR 10
Match: AT3G60130.1 (beta glucosidase 16 )

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-08
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 11 LVVLILVIGASGSSSYGVESNLNRSSFPQGFLFGTASTSYQYEGAANEDGRGPSI 66
          L++ +  IG S +  +     L R+ FPQ F+FG+A+++YQ EGAA+EDGRGPSI
Sbjct: 10 LLITLACIGVS-AKKHSTRPRLRRNDFPQDFVFGSATSAYQCEGAAHEDGRGPSI 63

The following BLAST results are available for this feature:

BLAST of Sed0001388 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878464.1	2.3e-19	76.92	beta-glucosidase 12-like [Benincasa hispida]	[more]
XP_008450458.1	1.3e-14	66.15	PREDICTED: beta-glucosidase 12-like [Cucumis melo]	[more]
XP_022154096.1	2.2e-14	67.14	beta-glucosidase 12-like [Momordica charantia]	[more]
XP_011660110.2	2.8e-14	70.77	beta-glucosidase 12 [Cucumis sativus]	[more]
KGN66450.1	2.8e-14	70.77	hypothetical protein Csa_006862 [Cucumis sativus]	[more]

BLAST of Sed0001388 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q339X2	7.5e-10	49.15	Beta-glucosidase 34 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU34 PE=2 SV=1	[more]
B8AVF0	9.9e-10	58.18	Beta-glucosidase 12 OS=Oryza sativa subsp. indica OX=39946 GN=BGLU12 PE=3 SV=1	[more]
Q7XKV4	1.3e-09	58.18	Beta-glucosidase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU12 PE=1 SV=2	[more]
Q7XKV2	1.1e-08	56.36	Beta-glucosidase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU13 PE=2 SV=2	[more]
Q8L7J2	2.4e-08	51.67	Beta-glucosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU6 PE=1 SV=1	[more]

BLAST of Sed0001388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPX7	6.2e-15	66.15	beta-glucosidase 12-like OS=Cucumis melo OX=3656 GN=LOC103492053 PE=3 SV=1	[more]
A0A6J1DMP4	1.1e-14	67.14	beta-glucosidase 12-like OS=Momordica charantia OX=3673 GN=LOC111021432 PE=3 SV=...	[more]
A0A0A0LX61	1.4e-14	70.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G611270 PE=3 SV=1	[more]
A0A6J1EIY3	1.1e-11	64.62	beta-glucosidase 12-like OS=Cucurbita moschata OX=3662 GN=LOC111434571 PE=3 SV=1	[more]
F6GUD3	5.4e-11	58.57	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g01420 PE=3 SV=...	[more]

BLAST of Sed0001388 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18080.1	2.3e-09	50.82	B-S glucosidase 44	[more]
AT2G44490.1	1.5e-08	60.98	Glycosyl hydrolase superfamily protein	[more]
AT3G18070.1	1.5e-08	49.18	beta glucosidase 43	[more]
AT3G18070.2	1.5e-08	49.18	beta glucosidase 43	[more]
AT3G60130.1	1.9e-08	49.09	beta glucosidase 16	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001360	Glycoside hydrolase family 1	PFAM	PF00232	Glyco_hydro_1	coord: 35..65 e-value: 1.7E-9 score: 36.6
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 19..65 e-value: 7.0E-12 score: 46.5
IPR033132	Glycosyl hydrolases family 1, N-terminal conserved site	PROSITE	PS00653	GLYCOSYL_HYDROL_F1_2	coord: 41..55
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 30..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001388.1	Sed0001388.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0019762	glucosinolate catabolic process
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0016020	membrane
molecular_function	GO:0008422	beta-glucosidase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds