Sed0001365 (gene) Chayote v1

Overview


Name	Sed0001365
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Zinc finger matrin-type protein
Location	LG11: 3878979 .. 3882813 (+)
RNA-Seq Expression	Sed0001365
Synteny	Sed0001365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGAATCGAACTCACGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACGCCCAATTTATCGGCTTTCCATAATTTAAACAATCTAGACTATAATTTTGTACTCTCATTTTTCATTTGATGTTCTTATGGCTTTTGAATCCATTCATAGTAGATACTGTTTGCGTATTGATATTCTCTCGGATTTGTTTTTCATTTTTTGGTTCTTGAAGATTTCAATCGGTGTTAGGGCAAGTTTTGATTTCGGCAGCGATGGCTAATTCCAGCAATACTGTAAGTTCGAATCTCCCGTTTTTGTTATAAACCCTAATTTCTGATATTATATCCCTGTTTCAATCCTGTGAGTGATTCTGATTCTAATGGTTGAAACCAGAAAAATGATCAAGAATGTTCGATGATGTTTACTCTTTCGTTTTCGGAACTAATTTTGGACAATTTCTTGTTTGTAGGCAGCTGGAGTTGATAACACATTTAGAAGAAAATTTGACCGAGAGGAGTATTTGGAACGAGCTCGAGAACGTGAAAAACAGGTTGTGGGGTTTTTGGAATTTCTTGTTTTCATCATGTTATGTTGATTTCTTTGTGAGTCTTTCAAATCTTACTGTTTGCTGATTCTGATGTTTTGAACTTTCATTTCAGGATGTTGAGAAGGTTAAGTCCAAATGTAAGTGGTTCCTTTTTTGCTGTGTTTGTTGGGTTTTGTTGAGTGTTTGAATCATATATGCTACAATCTGCTGACTTGATTTGAAGGGTCTGAAGGGTTTAATTTGTCATCTTTTTATAGTGAAGGGTCCACCAGTGCAAAGAAAGCCATTGAAACATAGAGATTATGAGGTAGACCTCGAGTCTCGATTGGGAAAAACCCAGGTTAGTCTGGCCATTCTTTCTCTGTTTTTTGAAGAGTTCTATGGAATCAATTGGTATTTTGGTCACCTCATTAGAGAAACTGTGTTTGCATATCTCTTTTGTAATATTTCGTGGAGTTTTGCCCGTCTTTCTGTGGTATAAGTTTAGTCCGTTTTCAGTTACTTGTAGTTTGTTTTCCTTCTAGTTCTGTCAGTAGTGCATTAACTTTCAAAATCATTTGTATATTAACTTTTAGCTCATCGGATCTTGGATTGCACCCATGTGGGTGTTTCTGTAGATCCAAGTTCTACATGACGTCCTTAATTTGATATATAAGCCTGTTTTCATATTACCTGTACTGTGTGTAGATAATTGGCTTATGTGATAAGGCATTTTTGTATGATGGATGATGGGAATTGACTATTTTGAGTACTCACATCATCGATAATAGTTCGTGTTAATGTGGAATAGGTATGGAATTTCATTTAAAAGTTATATTCATTTGGCCTGTTTTGATGAACTCCTAATGAATTGGGGAATCACACTCAATTATAGGCAACTAACTATTACCTGATTATGAAACAAGATTTTCATATATCTTGCACATATAATCTCATTCTTAGATTTCTGTTGGTCTGTTAAATGTCTTACCTGTTTCATTCTTGGATTGATTGTTAATTCATCCTTGTGCAGGTTGTCACTCCAGTAGCACCTCTAAGCCAGCAGGTATCACGCTTGACTAGCTTGTCTCTTACAATTGTTGAAATTGAAGCTTGAAATACATTTGAGTAATTTTTAAATTTAAATTAGTGTCTTACTTATTGGCTTAAAAAAAGCTGGAAAGAAAAATGAAGGTGGCTTTGTATGTCGGGTTTCGGTTAATCTGCTCTTGAATTGAGTGTGTTCGTTGGGTGCTGTGTGATGAAGAATAATTTGCAGTTAATAAACCCCTTTAGGTTGCTTATTCGGGTTGTGGAAGGATAGTAATGATATTGAGAAAGGGTGGAGCGGAGATAGGTGAGTTCTTGAAACGTCCCTATTTAAATACAATCTAGAACAGTTCCTATCAGCAGTTAATGCCTTAGGGTGTGTTTGGAGCACCGGTTTGATTATGATAGACCGAAGGTTATGATAAACCGTGGGTTATGATAAATGGTTGATTATTATAAACGGTGTTTGAGGGACTGGTTATGTAGCAAAAAGTAATATATGTAAGATTTATATAAACGGGCACGTAGGTTTAGATAAACGGGCACGCAGGTTTAGGTAACCACCGTTTAGGTTTAAATAAACGGGCACGCAGGTTTAGGTTTAAATAAACGGGCACGCAGGTTTAGGTTTAGGTAACCCAACCATTTACATAAACGGGGGCCCAAACACATCCTTATTGTTATTCCCTAGAGGCGGCTCTGTGGCTTGACTGCTTGGGTCTTGAGGGTGTGCTCCCCTTGAGATCCCAAATTCAAGGCCGCTATGGGTATTAATTTCCCAGGCGACCCCAAATTTCGCCTCCATATCCTACACTGTCTCCTGGTTCCTGGGTCATAAAAAAAAAAGGTACCTTATTGTTTTTTTAAAAAATTTATTAATGATTCCTTTTTCAGGCTGGATACTTCTGTTCTGTTTGTGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAAAAACGTATGCTGCTATCCCTTTTGACACAACTTTAACCAATTAAGCTTTTGAAAGATTCAAGTTTTATACTTTATATACCTTATATTTCTATTGACTTTATGTTATAGATCAGAGAGCCTTGGGTATGTCCATGCGTGTAGAACGGGCATCTCTTGAACAGGTACCATTGTAAATGCTCAGGAAGATGAAATTATCTGTCCTGTCCATTTATTGCAGATATTTGTGAAATCTCAGTGTCCAAGGGGCTAAGTTGCTTCATGTAAAATAGGTACAGGAGCGATTTGAAGTTCTTAAAAAGAGAAAAGTACCTGGAACCTTCACAGAGCAAGGTAAAGCTTTAGAGTTCGACTTAATTTTTAGTGTTTTAAAGATAGGATTTTCCTTTCCCTAGTAAATGATGGATGACACTATTGTTTCAATGCCATGCTTTTGACTCCAAAAATATACTAGCATGGGATATCGTCCCTATTTTTTGTTTCAATTTTCTTGATTATAAGTATCATGAGTGGACCTAATGGCCAAAGAGAGTCTTGGAGATCTCAAGAAGTTATAGATTCAATTCATGGTGACCACCTATCCTACTTACAAATTAATTTCCTTGATAGCTAAATGTTATAGGATCATACAATTTGTCTGGTGAGAATAATCGAGATGCGTATAAGCTGGTCCACTAACAGATATATATATAAAAAAAAAATTGGATTATGATTTTTTCTTCTTACCAATGGAAACTGATGTTGTATGTCTTTCCTTAGATCTTGACGAGCGTATATTGAAGCAGCAACAAGAAGAAGAACAACGGAAGCACGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGGTTAGTACTATGATCTCACCATTTAGGCTTCATTACAGAGGCAAACAAAAAAAAACATTCAATTTCTAATCATGAAAAGAGAGAACCATGCATTTTACGCTTTCGCCTTTTTCCTTGAGTGCAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCCGACATTGCGGCAATGATGGGATTTGGGGGCTTCGGTTCATCGAAGAAGTGACAATTACAGCCTTGAGCTTTGCCCTTGTGAACCTTGATGAGCTATTTAAAATTTGAACTGATGTGGAAAGGAAGGTCTAAACATCAGCTTCCCAGCCCCTTAGACTGTAAGTTACATGTTTTGAAGGTTTTTATTTAGTATGAACAAATGAAGAATTAGAGAGCTTAACATTGAACAAGATTTGTTTTACGTTGTACAATTATATCCTCGAGTATTATAGAAGAGCTTAACAGGTCCTTTTCTGTAACA

mRNA sequence

CGAGAATCGAACTCACGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACGCCCAATTTATCGGCTTTCCATAATTTAAACAATCTAGACTATAATTTTGTACTCTCATTTTTCATTTGATGTTCTTATGGCTTTTGAATCCATTCATAGTAGATACTGTTTGCGTATTGATATTCTCTCGGATTTGTTTTTCATTTTTTGGTTCTTGAAGATTTCAATCGGTGTTAGGGCAAGTTTTGATTTCGGCAGCGATGGCTAATTCCAGCAATACTGCAGCTGGAGTTGATAACACATTTAGAAGAAAATTTGACCGAGAGGAGTATTTGGAACGAGCTCGAGAACGTGAAAAACAGGATGTTGAGAAGGTTAAGTCCAAATTGAAGGGTCCACCAGTGCAAAGAAAGCCATTGAAACATAGAGATTATGAGGTAGACCTCGAGTCTCGATTGGGAAAAACCCAGGTTGTCACTCCAGTAGCACCTCTAAGCCAGCAGGCTGGATACTTCTGTTCTGTTTGTGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAAAAACATCAGAGAGCCTTGGGTATGTCCATGCGTGTAGAACGGGCATCTCTTGAACAGGTACAGGAGCGATTTGAAGTTCTTAAAAAGAGAAAAGTACCTGGAACCTTCACAGAGCAAGATCTTGACGAGCGTATATTGAAGCAGCAACAAGAAGAAGAACAACGGAAGCACGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCCGACATTGCGGCAATGATGGGATTTGGGGGCTTCGGTTCATCGAAGAAGTGACAATTACAGCCTTGAGCTTTGCCCTTGTGAACCTTGATGAGCTATTTAAAATTTGAACTGATGTGGAAAGGAAGGTCTAAACATCAGCTTCCCAGCCCCTTAGACTGTAAGTTACATGTTTTGAAGGTTTTTATTTAGTATGAACAAATGAAGAATTAGAGAGCTTAACATTGAACAAGATTTGTTTTACGTTGTACAATTATATCCTCGAGTATTATAGAAGAGCTTAACAGGTCCTTTTCTGTAACA

Coding sequence (CDS)

ATGGCTAATTCCAGCAATACTGCAGCTGGAGTTGATAACACATTTAGAAGAAAATTTGACCGAGAGGAGTATTTGGAACGAGCTCGAGAACGTGAAAAACAGGATGTTGAGAAGGTTAAGTCCAAATTGAAGGGTCCACCAGTGCAAAGAAAGCCATTGAAACATAGAGATTATGAGGTAGACCTCGAGTCTCGATTGGGAAAAACCCAGGTTGTCACTCCAGTAGCACCTCTAAGCCAGCAGGCTGGATACTTCTGTTCTGTTTGTGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAAAAACATCAGAGAGCCTTGGGTATGTCCATGCGTGTAGAACGGGCATCTCTTGAACAGGTACAGGAGCGATTTGAAGTTCTTAAAAAGAGAAAAGTACCTGGAACCTTCACAGAGCAAGATCTTGACGAGCGTATATTGAAGCAGCAACAAGAAGAAGAACAACGGAAGCACGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCCGACATTGCGGCAATGATGGGATTTGGGGGCTTCGGTTCATCGAAGAAGTGA

Protein sequence

MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEEEPEVDPDIAAMMGFGGFGSSKK

Homology

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BLAST of Sed0001365 vs. NCBI nr
Match: XP_008453709.1 (PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_008453717.1 PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_008453724.1 PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_038889474.1 zinc finger matrin-type protein 2 [Benincasa hispida] >XP_038889475.1 zinc finger matrin-type protein 2 [Benincasa hispida] >XP_038889476.1 zinc finger matrin-type protein 2 [Benincasa hispida])

HSP 1 Score: 360.5 bits (924), Expect = 9.2e-96
Identity = 191/202 (94.55%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA++SNTAAGVDNTFRRKFDREEYLERAREREKQ+VE+VKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRK PG+FTEQDL+ERILKQQQEEEQRK ERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
           EPEVDPD+AAMMGFGGF SSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of Sed0001365 vs. NCBI nr
Match: XP_011648855.1 (zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger matrin-type protein 2 [Cucumis sativus] >XP_031737170.1 zinc finger matrin-type protein 2 [Cucumis sativus] >KGN60986.1 hypothetical protein Csa_021129 [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 4.6e-95
Identity = 189/202 (93.56%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA++SNTAAGVDNTFRRKFDREEYLERAR+REKQ+V++VKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRK PG+FTEQDL+ERILKQQQEEEQRK ERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
           EPEVDPD+AAMMGFGGF SSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of Sed0001365 vs. NCBI nr
Match: XP_023536719.1 (zinc finger matrin-type protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.0 bits (907), Expect = 8.7e-94
Identity = 186/202 (92.08%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA++SNTAAGVDNTFRRKFDREEYLERAR+REKQ+ E+VKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRK PG+FTEQDL+ERI+KQQ+EEEQRK ERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
           EPEVDPD+AAMMGFGGF SSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of Sed0001365 vs. NCBI nr
Match: XP_022965943.1 (zinc finger matrin-type protein 2 [Cucurbita maxima])

HSP 1 Score: 352.8 bits (904), Expect = 1.9e-93
Identity = 185/202 (91.58%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA++SNTAAGVDNTFRRKFDREEYLERAR+REKQ+ E+VKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRK PG+FTEQDL+ERI+KQQ+EEEQRK ERRERKKE+KKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
           EPEVDPD+AAMMGFGGF SSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of Sed0001365 vs. NCBI nr
Match: TYJ96481.1 (zinc finger matrin-type protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 352.8 bits (904), Expect = 1.9e-93
Identity = 187/197 (94.92%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 6   NTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEVDLESR 65
           N AAGVDNTFRRKFDREEYLERAREREKQ+VE+VKSKLKGPPVQRKPLKHRDYEVDLESR
Sbjct: 15  NDAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESR 74

Query: 66  LGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQ 125
           LGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQ
Sbjct: 75  LGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQ 134

Query: 126 VQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEEEPEVD 185
           VQERFEVLKKRK PG+FTEQDL+ERILKQQQEEEQRK ERRERKKEKKKEKAAEEEPEVD
Sbjct: 135 VQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVD 194

Query: 186 PDIAAMMGFGGFGSSKK 203
           PD+AAMMGFGGF SSKK
Sbjct: 195 PDVAAMMGFGGFRSSKK 211

[Close]

BLAST of Sed0001365 vs. ExPASy Swiss-Prot
Match: Q96NC0 (Zinc finger matrin-type protein 2 OS=Homo sapiens OX=9606 GN=ZMAT2 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-42
Identity = 103/202 (50.99%), Postives = 147/202 (72.77%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA+ S T    +  FRRK+D++EY + A +R  ++ EK   K    PV+R+ L+HRDY+V
Sbjct: 1   MASGSGTK---NLDFRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLES+LGKT V+T   P S+  GY+C+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER
Sbjct: 61  DLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ++L+QV++RFEV  K+K+     + D +ER+ + ++EEE+ K  ++E++KEKK+    + 
Sbjct: 121 STLDQVKKRFEV-NKKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDL 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
             E D ++AA+MGF GFGS+KK
Sbjct: 181 TFEEDDEMAAVMGFSGFGSTKK 197

[Close]

BLAST of Sed0001365 vs. ExPASy Swiss-Prot
Match: Q9CPW7 (Zinc finger matrin-type protein 2 OS=Mus musculus OX=10090 GN=Zmat2 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-42
Identity = 103/202 (50.99%), Postives = 147/202 (72.77%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA+ S T    +  FRRK+D++EY + A +R  ++ EK   K    PV+R+ L+HRDY+V
Sbjct: 1   MASGSGTK---NLDFRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLES+LGKT V+T   P S+  GY+C+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER
Sbjct: 61  DLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ++L+QV++RFEV  K+K+     + D +ER+ + ++EEE+ K  ++E++KEKK+    + 
Sbjct: 121 STLDQVKKRFEV-NKKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDL 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
             E D ++AA+MGF GFGS+KK
Sbjct: 181 TFEEDDEMAAVMGFSGFGSTKK 197

[Close]

BLAST of Sed0001365 vs. ExPASy Swiss-Prot
Match: P34670 (Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans OX=6239 GN=snu-23 PE=3 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-30
Identity = 85/215 (39.53%), Postives = 141/215 (65.58%), Query Frame = 0


Query: 4   SSNTAAGVDNTFRRKFDREEYLERAR-----EREKQDVEKVKSKLKGPPVQRKPLKHRDY 63
           S + A+G ++  RR +D +EY   A+     E+E +D+   K K   P V+R+ L+ R+Y
Sbjct: 7   SGSQASGTNH--RRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREY 66

Query: 64  EVDLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRV 123
           +VDL+S++GK+ V+T   P ++  G++C VC+CVVKDS N+LDHINGK HQR +GMSM+ 
Sbjct: 67  KVDLDSKVGKSVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKT 126

Query: 124 ERASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQR--------KHERRERKK 183
           +++++  V+ERF+++K +K       Q   E++L+  QEEE R        K + R+RK+
Sbjct: 127 KKSTVADVRERFKLMKDKKEREKKEAQ--VEQLLEDVQEEEARMADFKKDKKTDNRKRKR 186

Query: 184 EKKKEKAAEEEPE---VDPDIAAMMGFGGFGSSKK 203
           + +K++  +++ +   +DP+I AMMGF GF +SK+
Sbjct: 187 DTRKDEEEDDDEDDSGLDPEIRAMMGFSGFSTSKR 217

[Close]

BLAST of Sed0001365 vs. ExPASy TrEMBL
Match: A0A1S3BWZ9 (zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.5e-96
Identity = 191/202 (94.55%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA++SNTAAGVDNTFRRKFDREEYLERAREREKQ+VE+VKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRK PG+FTEQDL+ERILKQQQEEEQRK ERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
           EPEVDPD+AAMMGFGGF SSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of Sed0001365 vs. ExPASy TrEMBL
Match: A0A0A0LM02 (U1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G033890 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.2e-95
Identity = 189/202 (93.56%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA++SNTAAGVDNTFRRKFDREEYLERAR+REKQ+V++VKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRK PG+FTEQDL+ERILKQQQEEEQRK ERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
           EPEVDPD+AAMMGFGGF SSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of Sed0001365 vs. ExPASy TrEMBL
Match: A0A6J1HQF6 (zinc finger matrin-type protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111465669 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 9.3e-94
Identity = 185/202 (91.58%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA++SNTAAGVDNTFRRKFDREEYLERAR+REKQ+ E+VKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRK PG+FTEQDL+ERI+KQQ+EEEQRK ERRERKKE+KKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
           EPEVDPD+AAMMGFGGF SSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of Sed0001365 vs. ExPASy TrEMBL
Match: A0A5D3BCY1 (Zinc finger matrin-type protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001260 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 9.3e-94
Identity = 187/197 (94.92%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 6   NTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEVDLESR 65
           N AAGVDNTFRRKFDREEYLERAREREKQ+VE+VKSKLKGPPVQRKPLKHRDYEVDLESR
Sbjct: 15  NDAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESR 74

Query: 66  LGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQ 125
           LGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQ
Sbjct: 75  LGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQ 134

Query: 126 VQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEEEPEVD 185
           VQERFEVLKKRK PG+FTEQDL+ERILKQQQEEEQRK ERRERKKEKKKEKAAEEEPEVD
Sbjct: 135 VQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVD 194

Query: 186 PDIAAMMGFGGFGSSKK 203
           PD+AAMMGFGGF SSKK
Sbjct: 195 PDVAAMMGFGGFRSSKK 211

[Close]

BLAST of Sed0001365 vs. ExPASy TrEMBL
Match: A0A6J1FDL7 (zinc finger matrin-type protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111444413 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 9.3e-94
Identity = 185/202 (91.58%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MANSSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEV 60
           MA++SNTAAGVDNTFRRKFDREEYLERAR+REKQ+ E+VKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGY+CSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRK PG+FTEQDL+ERI+KQQ+EEEQRK ERRERKKEKKKEKAAE+
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAED 180

Query: 181 EPEVDPDIAAMMGFGGFGSSKK 203
           EPEVDPD+AAMMGFGGF SSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of Sed0001365 vs. TAIR 10
Match: AT3G05760.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 314.7 bits (805), Expect = 5.4e-86
Identity = 165/199 (82.91%), Postives = 181/199 (90.95%), Query Frame = 0


Query: 4   SSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEVDLE 63
           SSNT  GVDNTFR+KFD EE+ ERAREREK++ ++ KS+ KGPPVQR PLKHRDY VDLE
Sbjct: 3   SSNTTTGVDNTFRKKFDVEEFKERAREREKKESDRSKSRSKGPPVQRAPLKHRDYHVDLE 62

Query: 64  SRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 123
           SRLGKTQVVTPVAPLSQQAGYFC VC+CVVKDSANYLDHINGKKHQRALGMSMRVER+SL
Sbjct: 63  SRLGKTQVVTPVAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSL 122

Query: 124 EQVQERFEVLKKRKVPGTFTEQDLDERILKQQQEEEQRKHERRERKKEKKKEKAAEEEPE 183
           EQVQERFEVLKKRK PGTFTEQDLDERI KQQ+EEE+ K +RRE+KKEKKK K  EEEPE
Sbjct: 123 EQVQERFEVLKKRKAPGTFTEQDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVEEEPE 182

Query: 184 VDPDIAAMMGFGGFGSSKK 203
           +DP++A MMGFGGFGSSKK
Sbjct: 183 MDPEVAEMMGFGGFGSSKK 201

[Close]

BLAST of Sed0001365 vs. TAIR 10
Match: AT3G05760.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-64
Identity = 122/143 (85.31%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 4   SSNTAAGVDNTFRRKFDREEYLERAREREKQDVEKVKSKLKGPPVQRKPLKHRDYEVDLE 63
           SSNT  GVDNTFR+KFD EE+ ERAREREK++ ++ KS+ KGPPVQR PLKHRDY VDLE
Sbjct: 3   SSNTTTGVDNTFRKKFDVEEFKERAREREKKESDRSKSRSKGPPVQRAPLKHRDYHVDLE 62

Query: 64  SRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 123
           SRLGKTQVVTPVAPLSQQAGYFC VC+CVVKDSANYLDHINGKKHQRALGMSMRVER+SL
Sbjct: 63  SRLGKTQVVTPVAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSL 122

Query: 124 EQVQERFEVLKKRKVPGTFTEQD 147
           EQVQERFEVLKKRK PGTFTEQ+
Sbjct: 123 EQVQERFEVLKKRKAPGTFTEQE 145

The following BLAST results are available for this feature:

BLAST of Sed0001365 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453709.1	9.2e-96	94.55	PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_008453717.1 PRED...	[more]
XP_011648855.1	4.6e-95	93.56	zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger ...	[more]
XP_023536719.1	8.7e-94	92.08	zinc finger matrin-type protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022965943.1	1.9e-93	91.58	zinc finger matrin-type protein 2 [Cucurbita maxima]	[more]
TYJ96481.1	1.9e-93	94.92	zinc finger matrin-type protein 2 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0001365 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96NC0	8.0e-42	50.99	Zinc finger matrin-type protein 2 OS=Homo sapiens OX=9606 GN=ZMAT2 PE=1 SV=1	[more]
Q9CPW7	8.0e-42	50.99	Zinc finger matrin-type protein 2 OS=Mus musculus OX=10090 GN=Zmat2 PE=2 SV=1	[more]
P34670	1.1e-30	39.53	Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans OX=623...	[more]

BLAST of Sed0001365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BWZ9	4.5e-96	94.55	zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 S...	[more]
A0A0A0LM02	2.2e-95	93.56	U1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G033890 PE=...	[more]
A0A6J1HQF6	9.3e-94	91.58	zinc finger matrin-type protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111465669 PE...	[more]
A0A5D3BCY1	9.3e-94	94.92	Zinc finger matrin-type protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1FDL7	9.3e-94	91.58	zinc finger matrin-type protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111444413 ...	[more]

BLAST of Sed0001365 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05760.1	5.4e-86	82.91	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G05760.2	1.2e-64	85.31	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..136
None	No IPR available	COILS	Coil	Coil	coord: 152..181
None	No IPR available	PFAM	PF12874	zf-met	coord: 84..108 e-value: 8.5E-6 score: 26.0
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 78..116 e-value: 1.1E-6 score: 30.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..54
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 81..115 e-value: 4.9E-9 score: 46.0
IPR040107	U4/U6.U5 small nuclear ribonucleoprotein component Snu23	PANTHER	PTHR45986	ZINC FINGER MATRIN-TYPE PROTEIN 2	coord: 7..202
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 80..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001365.1	Sed0001365.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding