Sed0001344 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAATATAGATTTGGGTGTAAAACCACTCAAAAACACATCTCACTTGAACCAAACAGATCCCAAAAAGCCTGGACCCTGGCCTACTTTAAAGCACCTTATTTTGATCAATTCAACCCTCACAACAACATGCAAATCCCAATCTCAATTTCATTATTCTGAAAAAACATATAATCACTCTTCATATCAACTTTTGTCTCTTTTTTATCTCTCTCTGCAAATTCTGCAGAAGAGACTATATTCCTCTCTATAATCCCCCACCCAGCCAGCCAGCCAGCCATGGCAGCAGCCTGTGGGAGCCTATTACCCGAAAACTCCACCGCCCTTCTCGAAACAACCTTCTCGTCATGGGGCCAGATCATGGCCCTCAAGCAGACCGAGCAGCACTCTACGTTTACGCAGATCTTCGGGGAGCTTCGTTTCAAAGGGGATATCCCGATGTCGAAGGGCGCTGGTGATCGGAGGAGAAGCTATAGCTTCTCGTCGTCAAGCAATTCGGAAAGTCTGCAGCTTTGCACAGAAGGGCTTGGTTATGAAAGCTTGGATGATGTTGAGGATTTGGAAGGGGAATTGTTTGAAGATGATGAGAAAAAACAGGTTCAATATCATCATCATCATCCAAGTAATAATTTGAAGCCAGGTGGAGGGATGATTATGAGGACTAAATCAGCAAATGTGGATCATGATTTTCCTCCACCTATTTCATGTATGGGCAAGACTGGCAAGCCTTGGGCTGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAAGAAGTTAGAGTTCCCACACATGAATTTCTACATGCTTCCAGAGAAAATGGACGCCTCAAACTGCATATTCTCGTACCAAATGACCAAACCCGAGAGGCCGCGAAGGAAGAAGACGCAAAGGACGACCACCACCACCCCGATGATAGTATCGACAAGTGCTGCAGGGTTCAAACTAGCAGCACATGATGCTGATGAGATAAGAGCAATCACTTTCTTAGATAGAATACTTTAATTTAACCTTTTCTTCTAAAAACCTTCTGAATAAGGCTCTAAGTATTTTCATTTTTTTCTTATCTGGTGATTGATGATTGCCTTCTTCCTAGGAATTTAATGTGTCCAATTTGAAGTTCATGAGTATTTCAGAAGCATTATTGATGTTGTTCTCTATTTCATGCATATTAATTTTACTTATCTGGGATTCTGAACTATAACATCCAGCCTATTCATATACCAACTGAATTTAATGTGTTGTGAAAAAACTTCACAAACACTATGGTCAAGAGAATAATCGATTCTCT CAAAATATAGATTTGGGTGTAAAACCACTCAAAAACACATCTCACTTGAACCAAACAGATCCCAAAAAGCCTGGACCCTGGCCTACTTTAAAGCACCTTATTTTGATCAATTCAACCCTCACAACAACATGCAAATCCCAATCTCAATTTCATTATTCTGAAAAAACATATAATCACTCTTCATATCAACTTTTGTCTCTTTTTTATCTCTCTCTGCAAATTCTGCAGAAGAGACTATATTCCTCTCTATAATCCCCCACCCAGCCAGCCAGCCAGCCATGGCAGCAGCCTGTGGGAGCCTATTACCCGAAAACTCCACCGCCCTTCTCGAAACAACCTTCTCGTCATGGGGCCAGATCATGGCCCTCAAGCAGACCGAGCAGCACTCTACGTTTACGCAGATCTTCGGGGAGCTTCGTTTCAAAGGGGATATCCCGATGTCGAAGGGCGCTGGTGATCGGAGGAGAAGCTATAGCTTCTCGTCGTCAAGCAATTCGGAAAGTCTGCAGCTTTGCACAGAAGGGCTTGGTTATGAAAGCTTGGATGATGTTGAGGATTTGGAAGGGGAATTGTTTGAAGATGATGAGAAAAAACAGGTTCAATATCATCATCATCATCCAAGTAATAATTTGAAGCCAGGTGGAGGGATGATTATGAGGACTAAATCAGCAAATGTGGATCATGATTTTCCTCCACCTATTTCATGTATGGGCAAGACTGGCAAGCCTTGGGCTGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAAGAAGTTAGAGTTCCCACACATGAATTTCTACATGCTTCCAGAGAAAATGGACGCCTCAAACTGCATATTCTCGTACCAAATGACCAAACCCGAGAGGCCGCGAAGGAAGAAGACGCAAAGGACGACCACCACCACCCCGATGATAGTATCGACAAGTGCTGCAGGGTTCAAACTAGCAGCACATGATGCTGATGAGATAAGAGCAATCACTTTCTTAGATAGAATACTTTAATTTAACCTTTTCTTCTAAAAACCTTCTGAATAAGGCTCTAAGTATTTTCATTTTTTTCTTATCTGGTGATTGATGATTGCCTTCTTCCTAGGAATTTAATGTGTCCAATTTGAAGTTCATGAGTATTTCAGAAGCATTATTGATGTTGTTCTCTATTTCATGCATATTAATTTTACTTATCTGGGATTCTGAACTATAACATCCAGCCTATTCATATACCAACTGAATTTAATGTGTTGTGAAAAAACTTCACAAACACTATGGTCAAGAGAATAATCGATTCTCT ATGGCAGCAGCCTGTGGGAGCCTATTACCCGAAAACTCCACCGCCCTTCTCGAAACAACCTTCTCGTCATGGGGCCAGATCATGGCCCTCAAGCAGACCGAGCAGCACTCTACGTTTACGCAGATCTTCGGGGAGCTTCGTTTCAAAGGGGATATCCCGATGTCGAAGGGCGCTGGTGATCGGAGGAGAAGCTATAGCTTCTCGTCGTCAAGCAATTCGGAAAGTCTGCAGCTTTGCACAGAAGGGCTTGGTTATGAAAGCTTGGATGATGTTGAGGATTTGGAAGGGGAATTGTTTGAAGATGATGAGAAAAAACAGGTTCAATATCATCATCATCATCCAAGTAATAATTTGAAGCCAGGTGGAGGGATGATTATGAGGACTAAATCAGCAAATGTGGATCATGATTTTCCTCCACCTATTTCATGTATGGGCAAGACTGGCAAGCCTTGGGCTGGTTTCAAATCTTATAGGTATGGTGGAAGGTTTATATTGAAAGAAGTTAGAGTTCCCACACATGAATTTCTACATGCTTCCAGAGAAAATGGACGCCTCAAACTGCATATTCTCGTACCAAATGACCAAACCCGAGAGGCCGCGAAGGAAGAAGACGCAAAGGACGACCACCACCACCCCGATGATAGTATCGACAAGTGCTGCAGGGTTCAAACTAGCAGCACATGA MAAACGSLLPENSTALLETTFSSWGQIMALKQTEQHSTFTQIFGELRFKGDIPMSKGAGDRRRSYSFSSSSNSESLQLCTEGLGYESLDDVEDLEGELFEDDEKKQVQYHHHHPSNNLKPGGGMIMRTKSANVDHDFPPPISCMGKTGKPWAGFKSYRYGGRFILKEVRVPTHEFLHASRENGRLKLHILVPNDQTREAAKEEDAKDDHHHPDDSIDKCCRVQTSST Homology
BLAST of Sed0001344 vs. NCBI nr
Match: XP_008461212.1 (PREDICTED: protein FAF-like, chloroplastic [Cucumis melo] >KAA0035517.1 protein FAF-like [Cucumis melo var. makuwa] >TYK31014.1 protein FAF-like [Cucumis melo var. makuwa]) HSP 1 Score: 240.0 bits (611), Expect = 2.0e-59 Identity = 155/270 (57.41%), Postives = 178/270 (65.93%), Query Frame = 0
BLAST of Sed0001344 vs. NCBI nr
Match: XP_004139585.1 (protein FAF-like, chloroplastic [Cucumis sativus] >XP_031739243.1 protein FAF-like, chloroplastic [Cucumis sativus] >KAE8652852.1 hypothetical protein Csa_022731 [Cucumis sativus] >KGN64947.1 hypothetical protein Csa_022859 [Cucumis sativus]) HSP 1 Score: 235.3 bits (599), Expect = 5.0e-58 Identity = 153/265 (57.74%), Postives = 180/265 (67.92%), Query Frame = 0
BLAST of Sed0001344 vs. NCBI nr
Match: XP_038894576.1 (uncharacterized protein LOC120083094 [Benincasa hispida]) HSP 1 Score: 235.3 bits (599), Expect = 5.0e-58 Identity = 153/267 (57.30%), Postives = 177/267 (66.29%), Query Frame = 0
BLAST of Sed0001344 vs. NCBI nr
Match: XP_022142424.1 (protein FANTASTIC FOUR 3-like [Momordica charantia]) HSP 1 Score: 228.8 bits (582), Expect = 4.7e-56 Identity = 141/264 (53.41%), Postives = 172/264 (65.15%), Query Frame = 0
BLAST of Sed0001344 vs. NCBI nr
Match: XP_023542093.1 (protein FAF-like, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 228.4 bits (581), Expect = 6.2e-56 Identity = 138/248 (55.65%), Postives = 158/248 (63.71%), Query Frame = 0
BLAST of Sed0001344 vs. ExPASy Swiss-Prot
Match: Q6NMR8 (Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana OX=3702 GN=FAF3 PE=2 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 2.0e-04 Identity = 54/201 (26.87%), Postives = 82/201 (40.80%), Query Frame = 0
BLAST of Sed0001344 vs. ExPASy Swiss-Prot
Match: Q9SFG6 (Protein FANTASTIC FOUR 4 OS=Arabidopsis thaliana OX=3702 GN=FAF4 PE=2 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 4.4e-04 Identity = 50/215 (23.26%), Postives = 89/215 (41.40%), Query Frame = 0
BLAST of Sed0001344 vs. ExPASy TrEMBL
Match: A0A5A7T1P9 (Protein FAF-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002630 PE=3 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 9.9e-60 Identity = 155/270 (57.41%), Postives = 178/270 (65.93%), Query Frame = 0
BLAST of Sed0001344 vs. ExPASy TrEMBL
Match: A0A1S3CEL7 (protein FAF-like, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499860 PE=3 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 9.9e-60 Identity = 155/270 (57.41%), Postives = 178/270 (65.93%), Query Frame = 0
BLAST of Sed0001344 vs. ExPASy TrEMBL
Match: A0A0A0LVU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166760 PE=3 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 2.4e-58 Identity = 153/265 (57.74%), Postives = 180/265 (67.92%), Query Frame = 0
BLAST of Sed0001344 vs. ExPASy TrEMBL
Match: A0A6J1CLI0 (protein FANTASTIC FOUR 3-like OS=Momordica charantia OX=3673 GN=LOC111012561 PE=3 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56 Identity = 141/264 (53.41%), Postives = 172/264 (65.15%), Query Frame = 0
BLAST of Sed0001344 vs. ExPASy TrEMBL
Match: A0A6J1G079 (uncharacterized protein LOC111449517 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449517 PE=3 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 3.0e-56 Identity = 136/241 (56.43%), Postives = 157/241 (65.15%), Query Frame = 0
BLAST of Sed0001344 vs. TAIR 10
Match: AT5G22390.1 (Protein of unknown function (DUF3049) ) HSP 1 Score: 88.2 bits (217), Expect = 9.3e-18 Identity = 76/208 (36.54%), Postives = 104/208 (50.00%), Query Frame = 0
BLAST of Sed0001344 vs. TAIR 10
Match: AT1G22110.1 (structural constituent of ribosome ) HSP 1 Score: 53.5 bits (127), Expect = 2.5e-07 Identity = 48/166 (28.92%), Postives = 73/166 (43.98%), Query Frame = 0
BLAST of Sed0001344 vs. TAIR 10
Match: AT5G19260.1 (Protein of unknown function (DUF3049) ) HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05 Identity = 54/201 (26.87%), Postives = 82/201 (40.80%), Query Frame = 0
BLAST of Sed0001344 vs. TAIR 10
Match: AT3G06020.1 (Protein of unknown function (DUF3049) ) HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05 Identity = 50/215 (23.26%), Postives = 89/215 (41.40%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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