Sed0001334 (gene) Chayote v1

Overview
NameSed0001334
Typegene
OrganismSechium edule (Chayote v1)
DescriptionGTPase IMAP family member 1, putative
LocationLG08: 35439882 .. 35440229 (+)
RNA-Seq ExpressionSed0001334
SyntenySed0001334
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGGAGAGGTTAATGCAATGGGAAAAAATGATGGTTACATTTTGCGTAGCCTCAGCGATTGCTATAGCTACTGTTTCTGTCCAAATTCAAACCAAGTTGTCTTTCATGTTTCATTTTTTGTCACTTGCGTTAATGATCTGCTTTTCTTTCACAGTCACAGCCAAACTCATTCACCATCAAAGCCAAAGGGTTTCTCAAATTCTCTACTGTATTGGTGGGTTTTGGTTTGTGACTGCCTTCTTTTTGGCCATTGCCATTCCTTATTCCTTCCACTTTCAAATTATAACCTTCGCCATCTATCTCACGTTTTTGTTTGCTTCTTTTATCTCCCATTTCACTTAG

mRNA sequence

ATGGCGGCGGAGAGGTTAATGCAATGGGAAAAAATGATGGTTACATTTTGCGTAGCCTCAGCGATTGCTATAGCTACTGTTTCTGTCCAAATTCAAACCAAGTTGTCTTTCATGTTTCATTTTTTGTCACTTGCGTTAATGATCTGCTTTTCTTTCACAGTCACAGCCAAACTCATTCACCATCAAAGCCAAAGGGTTTCTCAAATTCTCTACTGTATTGGTGGGTTTTGGTTTGTGACTGCCTTCTTTTTGGCCATTGCCATTCCTTATTCCTTCCACTTTCAAATTATAACCTTCGCCATCTATCTCACGTTTTTGTTTGCTTCTTTTATCTCCCATTTCACTTAG

Coding sequence (CDS)

ATGGCGGCGGAGAGGTTAATGCAATGGGAAAAAATGATGGTTACATTTTGCGTAGCCTCAGCGATTGCTATAGCTACTGTTTCTGTCCAAATTCAAACCAAGTTGTCTTTCATGTTTCATTTTTTGTCACTTGCGTTAATGATCTGCTTTTCTTTCACAGTCACAGCCAAACTCATTCACCATCAAAGCCAAAGGGTTTCTCAAATTCTCTACTGTATTGGTGGGTTTTGGTTTGTGACTGCCTTCTTTTTGGCCATTGCCATTCCTTATTCCTTCCACTTTCAAATTATAACCTTCGCCATCTATCTCACGTTTTTGTTTGCTTCTTTTATCTCCCATTTCACTTAG

Protein sequence

MAAERLMQWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIHHQSQRVSQILYCIGGFWFVTAFFLAIAIPYSFHFQIITFAIYLTFLFASFISHFT
Homology
BLAST of Sed0001334 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 3.3e-29
Identity = 81/111 (72.97%), Postives = 90/111 (81.08%), Query Frame = 0

Query: 2   AAERLMQWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIHH 61
           A E LMQWE MMVTFC+ +AIAIATVSVQIQTKLS MF FLS ALM CF FT +AKLI H
Sbjct: 55  AVEMLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAKLIKH 114

Query: 62  QSQRVSQILYCIGGFWFVTAFFLAIAIPYSFHFQIITFAIYLTFLFASFIS 113
             QRVS ILY +GGF FVTAFF+AIAIPY+FHFQI+T A+YL FLF +  S
Sbjct: 115 --QRVSLILYFLGGFCFVTAFFIAIAIPYAFHFQILTLALYLVFLFIAAFS 163

BLAST of Sed0001334 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 4.0e-19
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 0

Query: 2   AAERLMQWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIHH 61
           AAE + +W+ M+V FCV+SAIAIATVSVQI+ KL  +F+FLSL L++CF F    K+   
Sbjct: 36  AAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFVAFGKMTKS 95

Query: 62  QSQRVSQILYCIGGFWFVTAFFLAIAIPYSFHFQIITFAIYLTF-LFASFISH 114
             +RVS+ILYC+GG   VTA F+A AIPY+ +FQII F IYL F L    ++H
Sbjct: 96  ILKRVSRILYCVGGVLGVTALFIASAIPYASYFQIIIFLIYLIFWLMFMLVAH 148

BLAST of Sed0001334 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.7e-12
Identity = 42/90 (46.67%), Postives = 66/90 (73.33%), Query Frame = 0

Query: 1   MAAERLMQWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIH 60
           +AAE + +W+ M++ FCV+SAI IATVSV I+T+L   F  LS+A+++CF   V A++I+
Sbjct: 11  VAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMIN 70

Query: 61  HQSQRVSQILYCIGGFWFVTAFFLAIAIPY 91
              + +S+ILYC+GG  + ++ F+A AIPY
Sbjct: 71  SIFETLSKILYCVGGLLYASSCFIATAIPY 100

BLAST of Sed0001334 vs. NCBI nr
Match: KAF3947054.1 (hypothetical protein CMV_026761 [Castanea mollissima])

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-10
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 0

Query: 7   MQWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIHHQSQRV 66
           M W ++M+ FC+ASAI IA VSVQ+Q +LS  FH LSLA++  F+    ++ I  +    
Sbjct: 77  MDWTEIMIGFCLASAIDIALVSVQVQAQLSATFHLLSLAILFAFACFFVSEFIKSKFLVT 136

Query: 67  SQILYCIGGFWFVTAFFLAIAIPYSFHFQIITFAIYLTFLFASFI 112
           +Q+L  +G F+ VTAFF+AI IP+  + +  T+AIY   + A FI
Sbjct: 137 AQVLQKLGIFFTVTAFFMAITIPFPLYHKFATWAIYTISVLAIFI 181

BLAST of Sed0001334 vs. NCBI nr
Match: KAF3947053.1 (hypothetical protein CMV_026760 [Castanea mollissima])

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-08
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 8   QWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIHHQSQRVS 67
           +W ++ VTFC+ASAI IA VSVQ+ ++LS  FH LSL +++ F+  V +K I  +    +
Sbjct: 59  EWTELTVTFCLASAIDIALVSVQVNSQLSTAFHLLSLTILLAFASFVVSKFIKFKFLVSA 118

Query: 68  QILYCIGGFWFVTAFFLAIAIPYSFHFQIITFAIYLTFLFASFI 112
           Q+L   G F+ +TAFF+AI IP+  + +  ++A+Y     A  I
Sbjct: 119 QVLENFGVFFTMTAFFMAITIPFPLYLKFASWAVYTISALAILI 162

BLAST of Sed0001334 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.3e-17
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 0

Query: 1   MAAERLMQWEKMMVTFCVASAIAIATVSVQIQT--KLSFMFHFLSLALMICFSFTVTAKL 60
           M AE + +W++M+V  CV+SAI IATVSVQI+T  +L   F FLS+ +++CF F   AK+
Sbjct: 39  MVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKM 98

Query: 61  IHHQSQRVSQILYCIGGFWFVTAFFLAIAIPYSFHFQIITFAIYLTFLF 108
                + VS+ILYC+GGF  VTAFF+A AIP++ +FQII F +YL F F
Sbjct: 99  TKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCF 147

BLAST of Sed0001334 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 0

Query: 1   MAAERLMQWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIH 60
           + AE + + ++M++ FC++SAI IATVSVQ +TKL   F FLS+A++ICF     A++I 
Sbjct: 26  VVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARMIS 85

Query: 61  HQSQRVSQILYCIGGFWFVTAFFLAIAIPYSFHFQIITFAIYLTF--LFASFIS 113
              + +S+ILYC GGF   T  F+A AIPY  HF II   +Y  F  +F   IS
Sbjct: 86  SIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIFVMLIS 139

BLAST of Sed0001334 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 43/94 (45.74%), Postives = 68/94 (72.34%), Query Frame = 0

Query: 1   MAAERLMQWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIH 60
           +AAE + +W+ M++ FCV+SAI IATVSV I+T+L   F  LS+A+++CF   V A++I+
Sbjct: 25  VAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMIN 84

Query: 61  HQSQRVSQILYCIGGFWFVTAFFLAIAIPYSFHF 95
              + +S+ILYC+GG  + ++ F+A AIPY+  F
Sbjct: 85  SIFETLSKILYCVGGLLYASSCFIATAIPYASSF 118

BLAST of Sed0001334 vs. ExPASy TrEMBL
Match: A0A7N2M5A3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.6e-11
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 0

Query: 7   MQWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIHHQSQRV 66
           M W ++M+ FC+ASAI IA VSVQ+  +LS  FH LSLA +  F+    ++ I  +    
Sbjct: 77  MDWTEIMIGFCLASAIDIALVSVQVHAQLSATFHLLSLAFLFAFACFFVSEFIESKFLVT 136

Query: 67  SQILYCIGGFWFVTAFFLAIAIPYSFHFQIITFAIYLTFLFASFI 112
           +Q+L  +G F+ VTAFF+AIAIP+  + +  T+AIY   +FA FI
Sbjct: 137 AQVLQKLGVFFTVTAFFIAIAIPFPLYHKFATWAIYTISVFAIFI 181

BLAST of Sed0001334 vs. ExPASy TrEMBL
Match: A0A7N2R866 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 0

Query: 7   MQWEKMMVTFCVASAIAIATVSVQIQTKLSFMFHFLSLALMICFSFTVTAKLIHHQSQRV 66
           M+W ++++ FC+ASA+ IA +SVQ+ T+L  +FH  SLA+++ F+  V +K I+ +  R 
Sbjct: 80  MEWAEIVIAFCLASAVDIAILSVQVHTQLPALFHLFSLAILLAFASVVVSKFINPKFLRA 139

Query: 67  SQILYCIGGFWFVTAFFLAIAIPYSFHFQIITFAIYLTFLFASFI 112
           +Q+L   G F+ VTAFF+AI IP+ F+ +  ++ +Y     A  I
Sbjct: 140 AQVLEKFGVFFTVTAFFIAITIPFPFYLKFASWVVYAISALAILI 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6584385.13.3e-2972.97hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572911.14.0e-1954.87hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652531.14.7e-1246.67hypothetical protein Csa_013077, partial [Cucumis sativus][more]
KAF3947054.14.4e-1043.81hypothetical protein CMV_026761 [Castanea mollissima][more]
KAF3947053.12.4e-0840.38hypothetical protein CMV_026760 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQB65.3e-1752.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1[more]
A0A0A0LCY21.3e-1245.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1[more]
A0A0A0LSX41.7e-1245.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1[more]
A0A7N2M5A35.6e-1144.76Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2R8662.1e-1039.05Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34741IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 2..111
NoneNo IPR availablePANTHERPTHR34741:SF2IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 2..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001334.1Sed0001334.1mRNA