Sed0001315 (gene) Chayote v1

Overview


Name	Sed0001315
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Scarecrow-like protein 5-like isoform X1
Location	LG03: 8699038 .. 8700522 (+)
RNA-Seq Expression	Sed0001315
Synteny	Sed0001315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCCAAACAAAATCAACGAACCATTTTCCAATTTTCCCCTGATTTTCCATTACCTTACCTTCTTTCTCCAACCATGAAAACCTTAGCCCTAATTTCTAACCCTCTCTTCCGATTCCGATTCACTACGAGCCCTAAACCCTGCGTTTTCCCGGTAAATCGGAGACGAACAGCCACGTTCGCCGCCATTCACGACGCAGCCGACCCCGCTCAGGTCCAAATCACTTGGCAAATCGCCGCCGGAGCGATTGGTAATGATCGGAGAATGATTTTTTCGATTCTTTCTTCTCTCTTTTGTTTGACGAAATCTTATGTGCGGATTTGGATTTTGGTTGTTGTAGCTGGAGTGACCCCGTTCGTGGTGGCCGGAATCGAGTTCACCAAGAGAATTGTGAGTTTAGGAAATTTTTGTTTTCTTGTTGTTCTGTTTGGATTTTGCTTAACATTGAGAATCCAAATCGCAGATGGCGCAAAAGAGATGTAAAGAATGTGGCGGTTCTGGCCTTGTTTTCATTGACGATGACTACTTCCGTTGCCCTCAATGCGGTATATATATATTTTAAGTTTCTTTTATTGACAAGGGACTTACACATTTGTACCCGAAAACCCGAATAACTTGGACTAACCAACCGTAATGGTTGAGTTGGATTGAATTATAATTTTACGAGGTTTTTTTTTTTTTGGTGTTTAGGATCCAATATTGTCTTTAGACCAGTTAGTATACTCATGGCCAAGTAACTATTTAATAGGAATGGTTTTTAGATTAATCATTTTTCGACTAGTTTAATCCAACTCAACCTATCTTAATCAAGAATAATATCATACATATGTGCACAGTTAACTATGAAGATAAGTTCTTAACATATTAGTAAGGAACATAAAATAAAGAAATAGATATATTATGGGCTCGAGTTTAACATTTTGTAATTTCCTTTATTATTTTTTATTTTTTCATATTTGTGGGTTATGGACATTATTTTGAAGAGGAAAAATGAGATAAACACCACACAAATTGGAAAATATATGAGACAGCTTTTGTTGCTCTAATAAACCCAAAGGTCCAAAAAATGCTCCTAACCTGGACTGTGTACACTTGTATTTGTAGATATTTGTCTAATTTCTATCAATAAGTTTCTTTTTCTTCTTTCCCTATTCTTGATATTTGTGGGGTTTGGCAGGTGGTTTCTTGCCATGGCAGTCATGGAAGAGATTCTTTTCAGGTTGAAGAAGACATAAACCCCATAACATAATTCAACAGATTCAGAAGAAAATTGTTCAGGAAGATGAAGGTTTCATATAATTTGTATGTATTTGTGGTACAAAGCTAGCTATTCACAAGTTCTTATTACTTGCACAATGTTGATACAATTGCTAAATCCAAGTGTATAATATTGCCTATTAAGTTTCTAAGTTTTGTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGAGAATTCATGTTTCAGCGCAGTGGAAATCATATGGATT

mRNA sequence

GTCCCAAACAAAATCAACGAACCATTTTCCAATTTTCCCCTGATTTTCCATTACCTTACCTTCTTTCTCCAACCATGAAAACCTTAGCCCTAATTTCTAACCCTCTCTTCCGATTCCGATTCACTACGAGCCCTAAACCCTGCGTTTTCCCGGTAAATCGGAGACGAACAGCCACGTTCGCCGCCATTCACGACGCAGCCGACCCCGCTCAGGTCCAAATCACTTGGCAAATCGCCGCCGGAGCGATTGCTGGAGTGACCCCGTTCGTGGTGGCCGGAATCGAGTTCACCAAGAGAATTATGGCGCAAAAGAGATGTAAAGAATGTGGCGGTTCTGGCCTTGTTTTCATTGACGATGACTACTTCCGTTGCCCTCAATGCGGTGGTTTCTTGCCATGGCAGTCATGGAAGAGATTCTTTTCAGGTTGAAGAAGACATAAACCCCATAACATAATTCAACAGATTCAGAAGAAAATTGTTCAGGAAGATGAAGGTTTCATATAATTTGTATGTATTTGTGGTACAAAGCTAGCTATTCACAAGTTCTTATTACTTGCACAATGTTGATACAATTGCTAAATCCAAGTGTATAATATTGCCTATTAAGTTTCTAAGTTTTGTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGAGAATTCATGTTTCAGCGCAGTGGAAATCATATGGATT

Coding sequence (CDS)

ATGAAAACCTTAGCCCTAATTTCTAACCCTCTCTTCCGATTCCGATTCACTACGAGCCCTAAACCCTGCGTTTTCCCGGTAAATCGGAGACGAACAGCCACGTTCGCCGCCATTCACGACGCAGCCGACCCCGCTCAGGTCCAAATCACTTGGCAAATCGCCGCCGGAGCGATTGCTGGAGTGACCCCGTTCGTGGTGGCCGGAATCGAGTTCACCAAGAGAATTATGGCGCAAAAGAGATGTAAAGAATGTGGCGGTTCTGGCCTTGTTTTCATTGACGATGACTACTTCCGTTGCCCTCAATGCGGTGGTTTCTTGCCATGGCAGTCATGGAAGAGATTCTTTTCAGGTTGA

Protein sequence

MKTLALISNPLFRFRFTTSPKPCVFPVNRRRTATFAAIHDAADPAQVQITWQIAAGAIAGVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCGGFLPWQSWKRFFSG

Homology

[Close]

BLAST of Sed0001315 vs. NCBI nr
Match: XP_022154992.1 (uncharacterized protein LOC111022135 [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 6.0e-39
Identity = 87/122 (71.31%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MKTLALISNPLFRFRFTTSPKPCVFPVNRRRTATFAAIHDA-----ADPAQVQITWQIAA 60
           M+ LA ISN LFRF      KP     NRR   T AAI+DA     ADP+Q+QITWQIA 
Sbjct: 1   MEALAPISNSLFRF-----TKPLNSIPNRRPKTTIAAINDAASQQQADPSQLQITWQIAV 60

Query: 61  GAIAGVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCGGFLPWQSWKRFF 118
           GAIAGVTPFVVAGIEFTKRI+AQ+RC+ECGGSGLV ++DDYFRCPQCGGFLPWQSWKRFF
Sbjct: 61  GAIAGVTPFVVAGIEFTKRIVAQQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFF 117

[Close]

BLAST of Sed0001315 vs. NCBI nr
Match: XP_022935718.1 (uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022936477.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022937262.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022937933.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022938581.1 uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_023540549.1 uncharacterized protein LOC111800877 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-38
Identity = 90/134 (67.16%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 1   MKTLALISNPLFRFRFT--TSPKP-CVFPVN--------RRRTATFAAIHD------AAD 60
           M+ L  IS   FRF  T  TSP+P   FP+N        RRRT TFAAI        AAD
Sbjct: 1   MEALLPISTSPFRFPPTANTSPRPVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAAAD 60

Query: 61  PAQVQITWQIAAGAIAGVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCG 118
           P QV+ITWQI  GAIAGVTPFVVAGIEF+KRI+AQKRCKECGGSGLV +D DYFRCP+CG
Sbjct: 61  PTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPECG 120

[Close]

BLAST of Sed0001315 vs. NCBI nr
Match: XP_038903334.1 (uncharacterized protein LOC120089955 [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 86/118 (72.88%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 7   ISNPLFRFR----FTTSPKPCVFPVNRRRTATFAAIHDA---ADPAQVQITWQIAAGAIA 66
           ISNPLF FR    F   P+      NRRRTAT+AAI  A   AD  QV+ITWQI  GAIA
Sbjct: 9   ISNPLFPFRRSSTFPLKPRSNSIQ-NRRRTATYAAIDGASLTADSIQVEITWQIFVGAIA 68

Query: 67  GVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCGGFLPWQSWKRFFSG 118
           GVTPFVVAGIEF+KRIMAQKRCKECGGSGLV  DDDYFRCP+CGGFLPWQSW+RFF G
Sbjct: 69  GVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWRRFFWG 125

[Close]

BLAST of Sed0001315 vs. NCBI nr
Match: XP_023005598.1 (uncharacterized protein LOC111498537 [Cucurbita maxima] >XP_023005599.1 uncharacterized protein LOC111498537 [Cucurbita maxima])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 89/134 (66.42%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 1   MKTLALISNPLFRFRFT--TSPKP-CVFPVN--------RRRTATFAAIHD------AAD 60
           M+ L  IS   FRF  T   SP+P   FP+N        RRRT TFAAI        AAD
Sbjct: 1   MEALLPISTSPFRFLPTANASPRPVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAAAD 60

Query: 61  PAQVQITWQIAAGAIAGVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCG 118
           P QV+ITWQI  GAIAGVTPFVVAGIEF+KRI+AQKRCKECGGSGLV +D DYFRCP+CG
Sbjct: 61  PTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPECG 120

[Close]

BLAST of Sed0001315 vs. NCBI nr
Match: XP_023540547.1 (uncharacterized protein LOC111800877 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-36
Identity = 90/137 (65.69%), Postives = 99/137 (72.26%), Query Frame = 0


Query: 1   MKTLALISNPLFRFRFT--TSPKP-CVFPVN--------RRRTATFAAIHD------AAD 60
           M+ L  IS   FRF  T  TSP+P   FP+N        RRRT TFAAI        AAD
Sbjct: 1   MEALLPISTSPFRFPPTANTSPRPVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAAAD 60

Query: 61  PAQVQITWQIAAGAIAGVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQC- 118
           P QV+ITWQI  GAIAGVTPFVVAGIEF+KRI+AQKRCKECGGSGLV +D DYFRCP+C 
Sbjct: 61  PTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPECG 120

[Close]

BLAST of Sed0001315 vs. ExPASy TrEMBL
Match: A0A6J1DN65 (uncharacterized protein LOC111022135 OS=Momordica charantia OX=3673 GN=LOC111022135 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.9e-39
Identity = 87/122 (71.31%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MKTLALISNPLFRFRFTTSPKPCVFPVNRRRTATFAAIHDA-----ADPAQVQITWQIAA 60
           M+ LA ISN LFRF      KP     NRR   T AAI+DA     ADP+Q+QITWQIA 
Sbjct: 1   MEALAPISNSLFRF-----TKPLNSIPNRRPKTTIAAINDAASQQQADPSQLQITWQIAV 60

Query: 61  GAIAGVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCGGFLPWQSWKRFF 118
           GAIAGVTPFVVAGIEFTKRI+AQ+RC+ECGGSGLV ++DDYFRCPQCGGFLPWQSWKRFF
Sbjct: 61  GAIAGVTPFVVAGIEFTKRIVAQQRCEECGGSGLVLMEDDYFRCPQCGGFLPWQSWKRFF 117

[Close]

BLAST of Sed0001315 vs. ExPASy TrEMBL
Match: A0A6J1FBA7 (uncharacterized protein LOC111442262 OS=Cucurbita moschata OX=3662 GN=LOC111442262 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 90/134 (67.16%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 1   MKTLALISNPLFRFRFT--TSPKP-CVFPVN--------RRRTATFAAIHD------AAD 60
           M+ L  IS   FRF  T  TSP+P   FP+N        RRRT TFAAI        AAD
Sbjct: 1   MEALLPISTSPFRFPPTANTSPRPVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAAAD 60

Query: 61  PAQVQITWQIAAGAIAGVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCG 118
           P QV+ITWQI  GAIAGVTPFVVAGIEF+KRI+AQKRCKECGGSGLV +D DYFRCP+CG
Sbjct: 61  PTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPECG 120

[Close]

BLAST of Sed0001315 vs. ExPASy TrEMBL
Match: A0A6J1L2M2 (uncharacterized protein LOC111498537 OS=Cucurbita maxima OX=3661 GN=LOC111498537 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.5e-38
Identity = 89/134 (66.42%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 1   MKTLALISNPLFRFRFT--TSPKP-CVFPVN--------RRRTATFAAIHD------AAD 60
           M+ L  IS   FRF  T   SP+P   FP+N        RRRT TFAAI        AAD
Sbjct: 1   MEALLPISTSPFRFLPTANASPRPVSPFPLNLRSNSLNKRRRTPTFAAIDGASLAAAAAD 60

Query: 61  PAQVQITWQIAAGAIAGVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCG 118
           P QV+ITWQI  GAIAGVTPFVVAGIEF+KRI+AQKRCKECGGSGLV +D DYFRCP+CG
Sbjct: 61  PTQVEITWQIVVGAIAGVTPFVVAGIEFSKRIVAQKRCKECGGSGLVLMDKDYFRCPECG 120

[Close]

BLAST of Sed0001315 vs. ExPASy TrEMBL
Match: A0A1S3BLU9 (uncharacterized protein LOC103491051 OS=Cucumis melo OX=3656 GN=LOC103491051 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 84/118 (71.19%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 5   ALISNPLFRFRFTTSPKPCVFPV-NRRRTATFAAIHD----AADPAQVQITWQIAAGAIA 64
           ALISNPL         KP    + NRRRT  FAAI      AAD  QV+ITWQI  GAIA
Sbjct: 3   ALISNPLITHPTLRRSKPRSNSMHNRRRTPAFAAIDGASSLAADSTQVEITWQIFVGAIA 62

Query: 65  GVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCGGFLPWQSWKRFFSG 118
           GVTPFVVAGIEF+KRIMAQKRCKECGGSGLV  DDDYFRCP CGGFLPWQSW+RFF G
Sbjct: 63  GVTPFVVAGIEFSKRIMAQKRCKECGGSGLVLRDDDYFRCPDCGGFLPWQSWRRFFWG 120

[Close]

BLAST of Sed0001315 vs. ExPASy TrEMBL
Match: A0A0A0L7H1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061530 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.0e-36
Identity = 84/125 (67.20%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 5   ALISNPLFRFRFTTSPKPCVFPV--------NRRRTATFAAIHDA----ADPAQVQITWQ 64
           AL+SNPL      T P    FP+        NRRRT  FAAI  A    AD  QVQITWQ
Sbjct: 3   ALVSNPL--ITHPTLPPSTTFPLKPRSNSIHNRRRTPAFAAIDGASLLPADSTQVQITWQ 62

Query: 65  IAAGAIAGVTPFVVAGIEFTKRIMAQKRCKECGGSGLVFIDDDYFRCPQCGGFLPWQSWK 118
           I  GAIAGVTPFVVAGIEF+KRI  QKRCKECGGSGLV  DDDYFRCP+CGGFLPWQSW+
Sbjct: 63  IFVGAIAGVTPFVVAGIEFSKRIRVQKRCKECGGSGLVLRDDDYFRCPECGGFLPWQSWR 122

[Close]

BLAST of Sed0001315 vs. TAIR 10
Match: AT5G55570.1 (unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 130.6 bits (327), Expect = 8.4e-31
Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 27  VNRRRTATFAAIHDAAD----PAQVQITWQIAAGAIAGVTPFVVAGIEFTKRIMAQKRCK 86
           ++ RR  T +A+ + AD      + +ITWQI  G IAG+ PFVVAG+EF+KRI+AQKRC+
Sbjct: 49  MSNRRLKTTSALSELADTVAETGKSEITWQIIVGTIAGIIPFVVAGVEFSKRIIAQKRCE 108

Query: 87  ECGGSGLVFIDDDYFRCPQCGGFLPWQSWKRFFSG 118
           ECGG+GLV  D  YFRCP+CGGFLPWQSW+RFF+G
Sbjct: 109 ECGGTGLVSRDKKYFRCPECGGFLPWQSWRRFFTG 143

The following BLAST results are available for this feature:

BLAST of Sed0001315 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154992.1	6.0e-39	71.31	uncharacterized protein LOC111022135 [Momordica charantia]	[more]
XP_022935718.1	3.0e-38	67.16	uncharacterized protein LOC111442262 [Cucurbita moschata] >XP_022936477.1 unchar...	[more]
XP_038903334.1	1.1e-37	72.88	uncharacterized protein LOC120089955 [Benincasa hispida]	[more]
XP_023005598.1	1.1e-37	66.42	uncharacterized protein LOC111498537 [Cucurbita maxima] >XP_023005599.1 uncharac...	[more]
XP_023540547.1	1.3e-36	65.69	uncharacterized protein LOC111800877 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0001315 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN65	2.9e-39	71.31	uncharacterized protein LOC111022135 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1FBA7	1.4e-38	67.16	uncharacterized protein LOC111442262 OS=Cucurbita moschata OX=3662 GN=LOC1114422...	[more]
A0A6J1L2M2	5.5e-38	66.42	uncharacterized protein LOC111498537 OS=Cucurbita maxima OX=3661 GN=LOC111498537...	[more]
A0A1S3BLU9	1.8e-36	71.19	uncharacterized protein LOC103491051 OS=Cucumis melo OX=3656 GN=LOC103491051 PE=...	[more]
A0A0A0L7H1	3.0e-36	67.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061530 PE=4 SV=1	[more]

BLAST of Sed0001315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55570.1	8.4e-31	61.05	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36809	TRANSMEMBRANE PROTEIN	coord: 28..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001315.1	Sed0001315.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane