Sed0001306 (gene) Chayote v1

Overview


Name	Sed0001306
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S24
Location	LG08: 26709779 .. 26712647 (-)
RNA-Seq Expression	Sed0001306
Synteny	Sed0001306

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAGCTAGCTGGGCCTTAAATGATGGGCTTCGAAGCAAGGTCCATAACAAATAACCTATGTTAGCAACAATGGCGGAAGCTCTAGGGTTTCATCACTATAATTGTAGGGTTTCATCACCGGATCCAACTCTCTCCTCTTGGCAGAACATTCGCGTTGTTGCTTTCGGTTCACTCTTCTTCACCAACAATGGCAGACAAAGCAGTGACCATACGAACCAGAAAGTTCATGACCAATCGCCTTCTCTCCAGGAAGCAATTCGTGAGTTTTGCGTTAATTTTGTTTCATAAACGACTTCAAAGTATAGGTTTCATCGACCCATATTCAAATAATGTAGCATTTCGTATAATTTTCTCTTAGCTGATTCCCATTTGATCCCAGTTTTGTTTATGTGGCCTGAATCAATTCTGTAAATGTCTGTTCTCTTCTTTTTTCAACTTCTAACATTCTGCTGTGAATCCTTATTAAAACATTCTTCAATTATTTGGAGACAGTCGTTTTGTATGCTCTGTGTTTTATTATTTTAATTTCCTCTTTGAAACTTCCTCAATAAAATACATGTTTTATGAGAATGATGACCACCTCTACTTAGATTTAATATCATGGATTCCATGGAAATCAAAATGGAACCCAATGATATTTTTAGGCTTTAGATCTTACTCTTACTATTATTGTTATTATTTTCTGTTTGATGCAGGTCATCGATGTTCTTCACCCAGGAAGACCAAATGTCTCCAAGGTAAATTTATTTTAGTTATGGCAATGATTGTGATTCTATTCTCAAAAAAAAAAAAAAGATTGTGATTCTGCTTTAGCTTAATTGCAGCTTGTGCATTGCTTTCACGTTGTCTAAGTCCTGCCATTGCATTTGTTTTCCATTTTTTGAGAAACTGCTTACATTTTCTGCCCAATTTGTCTCAGTTTTTATTTGGATATCTCTTCTTTCTTTAAGGTTATTATGCTGTCGAACTTTAAAAACTTTGACAAGCTAAATGGTTTTTGTACACAAGTCTAATTTTTCAGAGATTTTGTTTCGACTGTTTGAATGTTAATTTGTCTGCTTATTTGATCTTACTTTTTGATATAAAGGCAGAGCTGAAGGATAAGTTAGCAGGAATGTATGAGGTGAAGGACCTAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCTACTGGGTTTGGTTTGATTTATGATTCAGTTGAAAATGCCAAAAAGTTTGAGCCAAAGTACAGACTCATCAGGGTAATTTAATTCTCGATTTATATTTCTATCGTCTGATTGTGGTTACTATCATTGTCAATGTCATGATTGCAATTGATTTTGTACGAAAGAAGGAAACCAACCCGTAATCTTTTTTCCTGTTTCTTTATAGACTTTTGCCTGCTCTTATATTGCATTTGAAGTAGTCTCCAAGGGGTGTTGAAGACTTGGGCTTTGAGGGTATGCTCCTCTCAAAGTCCCGAGTTCAAGTCTTCCATGTGACAATACTCTTTCGATGTCTCCGGTGCCCGCCTAGGGGTGGGCGTGGTTACCCTTGTTCAAAAAAAGAAAAAATATTGCATTTGAAGTAAGTTCAAGTTATATTAAAACTTTTAACCATCTTTTATTCTTAAGATAATGAATTCAATACAATGTCCTCAAGGGATGAAGACTTAGTTTTGAAGGTGTGCTCTAGCTTCAAAGTCCTAGGTTCGAGACTTACTTATGACATTAATTTGTAGACACCTACCACGTCTCTATTCCTTCGATGTCTCTCGGTATTGACCTAGGGATGGGCATGGTTACCCTTTTTTTTAAAAAAAAGATAATGAATTCAATACTTCTAGTTTTAAACCTATGGATTGCTTTGGTCTCCAAGGGATGGCCCAATCGTTGAAGGTTTGGGCTTTGAGGGTATGCTCCTCTGAAAGTCCCGAGTTTGATTCTTTCCTGTGACAACACTCCTTCGATGTCTTCGGTGCCTAGCCTGCGTGGTTACCCTTGTTTCAAAAAAATAAACCTATGGATTGCTTTGAGCAATGTCTGTCTTGAACTGGTGCTGTATTGTTGAGTTCAATGCAGGGAGAAAATGTAAGGGTGGGGCAGTTAGGTTTCACTTTTTTTCAAAGATATGTTTGTTGGTCCCAGATGATTCTTTTCTTTTATTTGCTGTTGCAAGTCTTTTATGTGAATCATTTGATAGAAGGTCGTGAATCATCATATTTTTGCAATTTTGGATCACTAATTTTGAATTTAGCTTTCCTGTCTTGATGCATGAAGTTGCTTATTTTCTGAAATCAATTGCTGTTATCTTTGTTACAGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAAGAGAGGAAAAACAGAACCAAGAAGATTCGTGGAGTAAAGAAAGTGAGTAACTTTTCTTTCTTGTTTTAGTTTCTAATTTTGTAAATATAACACAACATTTATCTAACATGGCTGCAATTTCCACTTTTCTCTTACCAGACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGAGTCGTTTTTGTGCTTTGCCTTTTTTATCTTTTCTTTATTCTATCTTTTTCCCTCTAAATTTATTTCTTAAGTGGTTTTAGGCACTTTTGAAATGAAATTTTTGGAGTGTTTCTGTAGGGAGCAACTTTGACATCAGTAACATACATTATATTAGCGATAAAAATTAAGTAGTCTCCCTGCCATTTTTAATTTTGTATGATGGGGTTTTTTGCCAAAGTTTTCTTTTTTCTTTTAGTATAAATTAGGGGAGGGAGACAACAAATCCTACTTAATGGGTAGCATTACTCAAATTAATGAGAATTATTTATATTTAAATCTTAAA

mRNA sequence

AAAAAAAAGCTAGCTGGGCCTTAAATGATGGGCTTCGAAGCAAGGTCCATAACAAATAACCTATGTTAGCAACAATGGCGGAAGCTCTAGGGTTTCATCACTATAATTGTAGGGTTTCATCACCGGATCCAACTCTCTCCTCTTGGCAGAACATTCGCGTTGTTGCTTTCGGTTCACTCTTCTTCACCAACAATGGCAGACAAAGCAGTGACCATACGAACCAGAAAGTTCATGACCAATCGCCTTCTCTCCAGGAAGCAATTCGTCATCGATGTTCTTCACCCAGGAAGACCAAATGTCTCCAAGGCAGAGCTGAAGGATAAGTTAGCAGGAATGTATGAGGTGAAGGACCTAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCTACTGGGTTTGGTTTGATTTATGATTCAGTTGAAAATGCCAAAAAGTTTGAGCCAAAGTACAGACTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAAGAGAGGAAAAACAGAACCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGAGTCGTTTTTGTGCTTTGCCTTTTTTATCTTTTCTTTATTCTATCTTTTTCCCTCTAAATTTATTTCTTAAGTGGTTTTAGGCACTTTTGAAATGAAATTTTTGGAGTGTTTCTGTAGGGAGCAACTTTGACATCAGTAACATACATTATATTAGCGATAAAAATTAAGTAGTCTCCCTGCCATTTTTAATTTTGTATGATGGGGTTTTTTGCCAAAGTTTTCTTTTTTCTTTTAGTATAAATTAGGGGAGGGAGACAACAAATCCTACTTAATGGGTAGCATTACTCAAATTAATGAGAATTATTTATATTTAAATCTTAAA

Coding sequence (CDS)

ATGGCAGACAAAGCAGTGACCATACGAACCAGAAAGTTCATGACCAATCGCCTTCTCTCCAGGAAGCAATTCGTCATCGATGTTCTTCACCCAGGAAGACCAAATGTCTCCAAGGCAGAGCTGAAGGATAAGTTAGCAGGAATGTATGAGGTGAAGGACCTAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCTACTGGGTTTGGTTTGATTTATGATTCAGTTGAAAATGCCAAAAAGTTTGAGCCAAAGTACAGACTCATCAGGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGCAAATGAAAGAGAGGAAAAACAGAACCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

Homology

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BLAST of Sed0001306 vs. NCBI nr
Match: XP_010651973.1 (PREDICTED: 40S ribosomal protein S24-1-like [Vitis vinifera] >XP_010651974.1 PREDICTED: 40S ribosomal protein S24-1-like [Vitis vinifera] >XP_010651975.1 PREDICTED: 40S ribosomal protein S24-1-like [Vitis vinifera] >XP_034712025.1 40S ribosomal protein S24-1-like [Vitis riparia] >XP_034712026.1 40S ribosomal protein S24-1-like [Vitis riparia] >CBI28705.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 250.4 bits (638), Expect = 9.1e-63
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MAD+AVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNV+KAELKDKLAGMYEVKD N+IFVF
Sbjct: 1   MADRAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVAKAELKDKLAGMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR KK+R
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKVR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001306 vs. NCBI nr
Match: KAF3976140.1 (hypothetical protein CMV_000636 [Castanea mollissima])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KL+ MYEVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSKMYEVKDTNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001306 vs. NCBI nr
Match: XP_002276521.1 (PREDICTED: 40S ribosomal protein S24-1 [Vitis vinifera] >CAN72332.1 hypothetical protein VITISV_035625 [Vitis vinifera])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 129/137 (94.16%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKDKLA MYEVKD N+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKDKLASMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR+KK+R
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRSKKVR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKA DAAKAGKKK
Sbjct: 121 GVKKTKAGDAAKAGKKK 137

[Close]

BLAST of Sed0001306 vs. NCBI nr
Match: XP_011079869.1 (40S ribosomal protein S24-1-like [Sesamum indicum])

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-62
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA MYEVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKA+DAAKAGKKK
Sbjct: 121 GVKKTKAADAAKAGKKK 137

[Close]

BLAST of Sed0001306 vs. NCBI nr
Match: XP_007206128.1 (40S ribosomal protein S24-1 [Prunus persica] >ONI04780.1 hypothetical protein PRUPE_6G339300 [Prunus persica])

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-62
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA +YEVKDLN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARLYEVKDLNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKIEKSRKQLKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001306 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.9e-59
Identity = 119/132 (90.15%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELK+KLA MYEVKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Sed0001306 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-57
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELK+KLA MYEVKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of Sed0001306 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.3e-39
Identity = 85/132 (64.39%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E+++KLA MY+V   + +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKASDAAK 133
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

[Close]

BLAST of Sed0001306 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-36
Identity = 86/132 (65.15%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E+++KLA MY+    + IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Sed0001306 vs. ExPASy Swiss-Prot
Match: Q5RAQ8 (40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-36
Identity = 86/132 (65.15%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E+++KLA MY+    + IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Sed0001306 vs. ExPASy TrEMBL
Match: D7TDY2 (40S ribosomal protein S24 OS=Vitis vinifera OX=29760 GN=VIT_07s0151g00900 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.4e-63
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MAD+AVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNV+KAELKDKLAGMYEVKD N+IFVF
Sbjct: 1   MADRAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVAKAELKDKLAGMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR KK+R
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKVR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001306 vs. ExPASy TrEMBL
Match: A5BH65 (40S ribosomal protein S24 OS=Vitis vinifera OX=29760 GN=VIT_14s0030g01620 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63
Identity = 129/137 (94.16%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKDKLA MYEVKD N+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKDKLASMYEVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR+KK+R
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRSKKVR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKA DAAKAGKKK
Sbjct: 121 GVKKTKAGDAAKAGKKK 137

[Close]

BLAST of Sed0001306 vs. ExPASy TrEMBL
Match: M5W0R1 (40S ribosomal protein S24 OS=Prunus persica OX=3760 GN=PRUPE_6G339300 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA +YEVKDLN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARLYEVKDLNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKIEKSRKQLKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001306 vs. ExPASy TrEMBL
Match: A0A6P6TCG2 (40S ribosomal protein S24 OS=Coffea arabica OX=13443 GN=LOC113699966 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 131/137 (95.62%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELK+KLA MYEVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQ+KERKNRTKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRTKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKA DAAK GKKK
Sbjct: 121 GVKKTKAGDAAKGGKKK 137

[Close]

BLAST of Sed0001306 vs. ExPASy TrEMBL
Match: A0A2C9VFS9 (40S ribosomal protein S24 OS=Manihot esculenta OX=3983 GN=MANES_08G127800 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELK+KLA +YEVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLASLYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKS+GFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRTKK+R
Sbjct: 61  KFRTHFGGGKSSGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKVR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           G+KKTKASDAAKAGKKK
Sbjct: 121 GIKKTKASDAAKAGKKK 137

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BLAST of Sed0001306 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60
Identity = 119/132 (90.15%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELK+KLA MYEVKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Sed0001306 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-58
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKDKLAGMYEVKDLNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELK+KLA MYEVKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

The following BLAST results are available for this feature:

BLAST of Sed0001306 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010651973.1	9.1e-63	94.16	PREDICTED: 40S ribosomal protein S24-1-like [Vitis vinifera] >XP_010651974.1 PRE...	[more]
KAF3976140.1	1.6e-62	95.62	hypothetical protein CMV_000636 [Castanea mollissima]	[more]
XP_002276521.1	2.0e-62	94.16	PREDICTED: 40S ribosomal protein S24-1 [Vitis vinifera] >CAN72332.1 hypothetical...	[more]
XP_011079869.1	2.7e-62	95.62	40S ribosomal protein S24-1-like [Sesamum indicum]	[more]
XP_007206128.1	2.7e-62	94.16	40S ribosomal protein S24-1 [Prunus persica] >ONI04780.1 hypothetical protein PR...	[more]

BLAST of Sed0001306 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	2.9e-59	90.15	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	1.6e-57	87.12	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	7.3e-39	64.39	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	1.5e-36	65.15	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
Q5RAQ8	1.5e-36	65.15	40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1	[more]

BLAST of Sed0001306 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D7TDY2	4.4e-63	94.16	40S ribosomal protein S24 OS=Vitis vinifera OX=29760 GN=VIT_07s0151g00900 PE=3 S...	[more]
A5BH65	9.9e-63	94.16	40S ribosomal protein S24 OS=Vitis vinifera OX=29760 GN=VIT_14s0030g01620 PE=3 S...	[more]
M5W0R1	1.3e-62	94.16	40S ribosomal protein S24 OS=Prunus persica OX=3760 GN=PRUPE_6G339300 PE=3 SV=1	[more]
A0A6P6TCG2	1.3e-62	95.62	40S ribosomal protein S24 OS=Coffea arabica OX=13443 GN=LOC113699966 PE=3 SV=1	[more]
A0A2C9VFS9	1.3e-62	93.43	40S ribosomal protein S24 OS=Manihot esculenta OX=3983 GN=MANES_08G127800 PE=3 S...	[more]

BLAST of Sed0001306 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	2.0e-60	90.15	Ribosomal protein S24e family protein	[more]
AT5G28060.1	1.1e-58	87.12	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.3370		coord: 1..132 e-value: 9.9E-60 score: 202.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..137
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 e-value: 1.1E-35 score: 121.4
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19.494967
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001306.1	Sed0001306.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome