Sed0001299 (gene) Chayote v1

Overview


Name	Sed0001299
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S24
Location	LG08: 31492548 .. 31494726 (+)
RNA-Seq Expression	Sed0001299
Synteny	Sed0001299

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTTTCCGCTTTCTCTTCTATCGTATCGTAGCCTTCAGGTCTCAGAGCTGCCGTTCCTCGAGCTTCAAGCTTTCCATCCTCTTCGGAGCACATCCAGCCATGGCAGACAAGGCCGTCACCATCCGCACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTAAGTTTCTCAGATCGCACTTCTTCGTTTTCGTCTTCTGTTAGGCTTCGAGTATGAGTAATTATGACGCGCTTGATTGGAACTGGACTTATGTTTTTATTCGTTTTTGCGTTATGAGTTTGATTTCGTTAGATTCTGGATTCTGGTGCGATGTTGAAGTCCGTTGGTCGAATTTGTTTGAAGCTGAGGATAGTTGTCTTCTTGTGTACCCGAAAACCCTAATGTCTTTAATGAGTCTGAAGTTTATGGTTTCTCTTTGATCTGTAGCTTAAGTTTTAGTGTTGCTTTTATGAAGATGCTGAATCGTTGCTTAAGGAGTGGGAACTTATGGTGATAGGACGGGCGCTTTTATTTGTTCATTATTTCATCCGTCCTGCTCGTTTTAACTGTGTATTTAGCTGCCTTTTAATGAGTTTGGAAGAGCGATTGAAGCCGTCTATAACTTACTGGTCGTTTTTTTATTGCAGGTCATTGATGTTCTTCACCCAGGCAGACCCAACGTCTCTAAGGTAATACCTTAGTTAAGTTCATTTGGTTAATTTTTTTTTAAACAAGGGGTGCCTAGCCCGAGACAAGGGGTAACCATGCCCGTCCTCGGGCTAGGCACTGGGAGACATCGAAGAAGTAACCTCATAGGTGAGTCTCGAACTTGAGACCTTGAAGGGACATAGCTTCAAAACCCAAGTCTTCAACCACTATGTCATCCTTGGGGACAAGTTCTTTTGGTTAATTTATGTTATCTTACTCTTTGTGAGTGTTCTCAAGATATTGTCCATCTGCATAATCCAAATGAGTACACGTTAATCTTTCTTTTTGTGTTCCTCCACTCCAAATGTATCATGTTTTGAATCCGTTTGAATAGCCAACTTTTTCACAAATATTATTTTTTTACACTTTGTTTTGTGTTGTTTGTATTTGGTTAGTTTTTATTGAAATTGTGTAATCTACCATTTCTGCCATTCCAGCTGCTGAATTATTTATGTTTTTGGCCTATGGTGCTTATGGTGCTCATAATGCTGTATGTTTTTATATCTTGGTCTCTAGACTGAGCTGAAGGAGAAGTTGGCTGCACTCTATGAGGTCAAAGATACAAATGCCATCTTTGTTTTCAAGTTCAAAACCCACTTTGGTGGAGGAAAATCTACTGGGTTTGGCTTGATCTATGATTCTGTTGAGAATGCAAAGAAGTTCGAGCCAAAATATAGGCTAATCAGGGTAATCTACACAATTTTCATCTTATCCAAATGGTGCTAGCAATGCCTTTAACTAGAGCCTTTTTCAATGAATGACATTACTGAAACTTGACTTTTCTTATGACAGAATGGACTTGATACTAAGGTAGAAAAATCAAGGAAGCAAATGAAAGAAAGGAAGAACAGGACCAAGAAAATCCGTGGAGTCAAGAAGGTAAGTGAATATCTTTTTTATGAGTTCTTAAAGTTAAATTTATCTTCATTTGAAACATTACCATTTATGACCTATATTTTACATCTTTTTACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGAGAATGCTGGAATTTTGTGTCTACCACCAAGCATCATCTGCAGTATTGTGCTTTCTTTTTTATAGTCTCTTTTTAGTTTTTTTTCCCCCTTAATTAAATTATGTTGATCATTATCTGGTTGTTGGTGACTAGTGATTGAAAACCTGGTTCTTTGCAGAGGACAAAATTTTTGACGTTACAGGACATGTATTTCCTTTTTTTCCCCGAATCTTTTGGTTGACCCATTCGAAGCATTATCCTTAATAGATTATCAAAAAAATGACTGGGTAGGATAATCCAAGTTTATCAGATGGCTGTTTCAATTTTTCTTAATTGAGTTGTTTGCATATTTGTTAAGTTGTTGGAAAAGAATTCGATCCAATCTTGTGGGGTAAATTTTTTATCACCTATCTAGGAATAATGTTTCGTTTGAATGAATACTTTAGTTAGGTATCTCTCAGGGGTGGTGCAGTGGTTGAAAGTTT

mRNA sequence

GGTTTTTCCGCTTTCTCTTCTATCGTATCGTAGCCTTCAGGTCTCAGAGCTGCCGTTCCTCGAGCTTCAAGCTTTCCATCCTCTTCGGAGCACATCCAGCCATGGCAGACAAGGCCGTCACCATCCGCACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAACGTCTCTAAGACTGAGCTGAAGGAGAAGTTGGCTGCACTCTATGAGGTCAAAGATACAAATGCCATCTTTGTTTTCAAGTTCAAAACCCACTTTGGTGGAGGAAAATCTACTGGGTTTGGCTTGATCTATGATTCTGTTGAGAATGCAAAGAAGTTCGAGCCAAAATATAGGCTAATCAGGAATGGACTTGATACTAAGGTAGAAAAATCAAGGAAGCAAATGAAAGAAAGGAAGAACAGGACCAAGAAAATCCGTGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGAGAATGCTGGAATTTTGTGTCTACCACCAAGCATCATCTGCAGTATTGTGCTTTCTTTTTTATAGTCTCTTTTTAGTTTTTTTTCCCCCTTAATTAAATTATGTTGATCATTATCTGGTTGTTGGTGACTAGTGATTGAAAACCTGGTTCTTTGCAGAGGACAAAATTTTTGACGTTACAGGACATGTATTTCCTTTTTTTCCCCGAATCTTTTGGTTGACCCATTCGAAGCATTATCCTTAATAGATTATCAAAAAAATGACTGGGTAGGATAATCCAAGTTTATCAGATGGCTGTTTCAATTTTTCTTAATTGAGTTGTTTGCATATTTGTTAAGTTGTTGGAAAAGAATTCGATCCAATCTTGTGGGGTAAATTTTTTATCACCTATCTAGGAATAATGTTTCGTTTGAATGAATACTTTAGTTAGGTATCTCTCAGGGGTGGTGCAGTGGTTGAAAGTTT

Coding sequence (CDS)

ATGGCAGACAAGGCCGTCACCATCCGCACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAACGTCTCTAAGACTGAGCTGAAGGAGAAGTTGGCTGCACTCTATGAGGTCAAAGATACAAATGCCATCTTTGTTTTCAAGTTCAAAACCCACTTTGGTGGAGGAAAATCTACTGGGTTTGGCTTGATCTATGATTCTGTTGAGAATGCAAAGAAGTTCGAGCCAAAATATAGGCTAATCAGGAATGGACTTGATACTAAGGTAGAAAAATCAAGGAAGCAAATGAAAGAAAGGAAGAACAGGACCAAGAAAATCCGTGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of Sed0001299 vs. NCBI nr
Match: KAF3976140.1 (hypothetical protein CMV_000636 [Castanea mollissima])

HSP 1 Score: 248.4 bits (633), Expect = 3.5e-62
Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKL+ +YEVKDTNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSKMYEVKDTNAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001299 vs. NCBI nr
Match: XP_021619696.1 (40S ribosomal protein S24-1-like [Manihot esculenta] >OAY44166.1 hypothetical protein MANES_08G127800v8 [Manihot esculenta])

HSP 1 Score: 248.1 bits (632), Expect = 4.5e-62
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSK ELKEKLA+LYEVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLASLYEVKDPNAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKS+GFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRTKK+R
Sbjct: 61  KFRTHFGGGKSSGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKVR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           G+KKTKASDAAKAGKKK
Sbjct: 121 GIKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001299 vs. NCBI nr
Match: XP_042053613.1 (40S ribosomal protein S24-1-like [Salvia splendens] >KAG6426899.1 hypothetical protein SASPL_111138 [Salvia splendens])

HSP 1 Score: 247.3 bits (630), Expect = 7.7e-62
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSK ELKEKLA +YEVKDTNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLARMYEVKDTNAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTK+EKSRKQMKERKNRTKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKIEKSRKQMKERKNRTKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKA DAAKAGKKK
Sbjct: 121 GVKKTKAGDAAKAGKKK 137

[Close]

BLAST of Sed0001299 vs. NCBI nr
Match: XP_022933090.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S ribosomal protein S24-1-like [Cucurbita maxima] >XP_023529307.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo] >KAG7020892.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +Y+VKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001299 vs. NCBI nr
Match: KAG6588329.1 (40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +Y+VKD NAIFVF
Sbjct: 36  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 95

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR KKIR
Sbjct: 96  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 155

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 156 GVKKTKASDAAKAGKKK 172

[Close]

BLAST of Sed0001299 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58
Identity = 117/132 (88.64%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSK ELKEKLA +YEVKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Sed0001299 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 220.7 bits (561), Expect = 1.0e-56
Identity = 113/132 (85.61%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSK ELKEKLA +YEVKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of Sed0001299 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-39
Identity = 87/132 (65.91%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSKTE++EKLA +Y+V   + +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
            FKT+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKASDAAK 133
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

[Close]

BLAST of Sed0001299 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-36
Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V KTE++EKLA +Y+    + IFVF F+TH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Sed0001299 vs. ExPASy Swiss-Prot
Match: Q5RAQ8 (40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-36
Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVFKFKTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V KTE++EKLA +Y+    + IFVF F+TH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Sed0001299 vs. ExPASy TrEMBL
Match: A0A2C9VFS9 (40S ribosomal protein S24 OS=Manihot esculenta OX=3983 GN=MANES_08G127800 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.2e-62
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSK ELKEKLA+LYEVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLASLYEVKDPNAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKS+GFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNRTKK+R
Sbjct: 61  KFRTHFGGGKSSGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKVR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           G+KKTKASDAAKAGKKK
Sbjct: 121 GIKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001299 vs. ExPASy TrEMBL
Match: A0A4D9BQW7 (40S ribosomal protein S24 OS=Salvia splendens OX=180675 GN=RP-S24e PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.7e-62
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSK ELKEKLA +YEVKDTNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLARMYEVKDTNAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTK+EKSRKQMKERKNRTKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKIEKSRKQMKERKNRTKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKA DAAKAGKKK
Sbjct: 121 GVKKTKAGDAAKAGKKK 137

[Close]

BLAST of Sed0001299 vs. ExPASy TrEMBL
Match: A0A6J1I401 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.4e-62
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +Y+VKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001299 vs. ExPASy TrEMBL
Match: A0A6J1F3Y6 (40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.4e-62
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +Y+VKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKSTGFGLIYDSVENAKK+EPKYRLIRNGLDTKVEKSRKQMKERKNR KKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Sed0001299 vs. ExPASy TrEMBL
Match: A0A6P6TCG2 (40S ribosomal protein S24 OS=Coffea arabica OX=13443 GN=LOC113699966 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.3e-62
Identity = 129/137 (94.16%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK ELKEKLA +YEVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQ+KERKNRTKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRTKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKA DAAK GKKK
Sbjct: 121 GVKKTKAGDAAKGGKKK 137

[Close]

BLAST of Sed0001299 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.3e-59
Identity = 117/132 (88.64%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSK ELKEKLA +YEVKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKS+GFGLIYD+VE+AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Sed0001299 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 220.7 bits (561), Expect = 7.2e-58
Identity = 113/132 (85.61%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKTELKEKLAALYEVKDTNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSK ELKEKLA +YEVKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFKTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRTKKIR 120
           KF+THFGGGKS+G+GLIYD+VENAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNR KKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

The following BLAST results are available for this feature:

BLAST of Sed0001299 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3976140.1	3.5e-62	94.89	hypothetical protein CMV_000636 [Castanea mollissima]	[more]
XP_021619696.1	4.5e-62	93.43	40S ribosomal protein S24-1-like [Manihot esculenta] >OAY44166.1 hypothetical pr...	[more]
XP_042053613.1	7.7e-62	94.16	40S ribosomal protein S24-1-like [Salvia splendens] >KAG6426899.1 hypothetical p...	[more]
XP_022933090.1	1.3e-61	94.16	40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S riboso...	[more]
KAG6588329.1	1.3e-61	94.16	40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0001299 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	1.9e-58	88.64	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	1.0e-56	85.61	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	1.1e-39	65.91	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	1.5e-36	65.15	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
Q5RAQ8	1.5e-36	65.15	40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1	[more]

BLAST of Sed0001299 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2C9VFS9	2.2e-62	93.43	40S ribosomal protein S24 OS=Manihot esculenta OX=3983 GN=MANES_08G127800 PE=3 S...	[more]
A0A4D9BQW7	3.7e-62	94.16	40S ribosomal protein S24 OS=Salvia splendens OX=180675 GN=RP-S24e PE=3 SV=1	[more]
A0A6J1I401	6.4e-62	94.16	40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1	[more]
A0A6J1F3Y6	6.4e-62	94.16	40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=...	[more]
A0A6P6TCG2	8.3e-62	94.16	40S ribosomal protein S24 OS=Coffea arabica OX=13443 GN=LOC113699966 PE=3 SV=1	[more]

BLAST of Sed0001299 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	1.3e-59	88.64	Ribosomal protein S24e family protein	[more]
AT5G28060.1	7.2e-58	85.61	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 e-value: 1.5E-36 score: 124.2
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19.80228
None	No IPR available	GENE3D	3.30.70.3370		coord: 1..132 e-value: 1.0E-59 score: 202.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..137
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001299.1	Sed0001299.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome