Sed0001266 (gene) Chayote v1

Overview


Name	Sed0001266
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Microtubule-associated proteins 70-5 isoform 1
Location	LG08: 33447340 .. 33448361 (-)
RNA-Seq Expression	Sed0001266
Synteny	Sed0001266

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGATCAACCAAGCAAAGTTTGAGGACTTTTGGAACTCATCAGCAATACAATGTTTTATCACTTATAAATACCAACTTACAAGAAAAGAAAATGGCTCATAGGCATCTTCTTCTCCCATAGCCATTCTCCTTTTCACCATGGACATTCAAGTCATTCAGACAAAAGTTCTCCAACACAAAGACCAGATAACTGTTGTAGCAGCAGCTTCAGCGATTCTTTCGTTGTTCGTATACGCCGCCCCTCGGTTTCTAAGCATTCTAGCATTCTTTTGGCCTCTTTTTCTCTCGACAGCCGTACTCTTCGTGGTAATTACTGCTTTTGGAGGAGGTTTCCATGTTGGAACCGAAGGTCATGGCGTAAGAGCAGGTGAAAGGATCCTAGATTACGTAGCAGGGCGGCCTGAATACGCCGAATACCATTATAGGTACCAATAAGAGATCGTTTGTCGCTTGTTGGCCATAATTTAGACACCGATGACTCGAAATTCGTCTATGTCTGCTCACTTTGTATACTAAAGAATTTGTGATAAACACATGTATTCAATTCTAAAATGGTTGTGTAATGGTTGAGTGCTCAAGGAAGGGGAGGTTCCAAACTACCTCAAATACTTGAGTTATCTTGTAGTTTTCTTTTATCTCTTACCTTTCAATAAATTTGGGTTCTATTATAGAATCACAAGAAAGCAATGTGTTCAAGTATCAACCATTCAAACTTGTTGAATGGTTTATATGGGTTGGATAGTGTTGAGATATGTCTTCAATGCATTAATGCCCTACGATTAGTAGTTGGGGGTCTCACTGCCCGGTCAGCGAGCGGGGTGAATGAGAGTGTCCCCATTGCGCAAACAACTTTTCTCATTGCATACCATTGCTTCGCGCATAGCAGCAATGCAAGTCCAACCCACATTCGCACTCTACAATGCTAGCACTTCTGCATTATGTTGTGCGTTTTGCGTGTGATAGCGCATCTGCATTCTATTTAATACTTATGCATTCTGTAATAGGGTTTAATGAGAGTGCA

mRNA sequence

GCTGATCAACCAAGCAAAGTTTGAGGACTTTTGGAACTCATCAGCAATACAATGTTTTATCACTTATAAATACCAACTTACAAGAAAAGAAAATGGCTCATAGGCATCTTCTTCTCCCATAGCCATTCTCCTTTTCACCATGGACATTCAAGTCATTCAGACAAAAGTTCTCCAACACAAAGACCAGATAACTGTTGTAGCAGCAGCTTCAGCGATTCTTTCGTTGTTCGTATACGCCGCCCCTCGGTTTCTAAGCATTCTAGCATTCTTTTGGCCTCTTTTTCTCTCGACAGCCGTACTCTTCGTGGTAATTACTGCTTTTGGAGGAGGTTTCCATGTTGGAACCGAAGGTCATGGCGTAAGAGCAGGTGAAAGGATCCTAGATTACGTAGCAGGGCGGCCTGAATACGCCGAATACCATTATAGGTACCAATAAGAGATCGTTTGTCGCTTGTTGGCCATAATTTAGACACCGATGACTCGAAATTCGTCTATGTCTGCTCACTTTGTATACTAAAGAATTTGTGATAAACACATGTATTCAATTCTAAAATGGTTGTGTAATGGTTGAGTGCTCAAGGAAGGGGAGGTTCCAAACTACCTCAAATACTTGAGTTATCTTGTAGTTTTCTTTTATCTCTTACCTTTCAATAAATTTGGGTTCTATTATAGAATCACAAGAAAGCAATGTGTTCAAGTATCAACCATTCAAACTTGTTGAATGGTTTATATGGGTTGGATAGTGTTGAGATATGTCTTCAATGCATTAATGCCCTACGATTAGTAGTTGGGGGTCTCACTGCCCGGTCAGCGAGCGGGGTGAATGAGAGTGTCCCCATTGCGCAAACAACTTTTCTCATTGCATACCATTGCTTCGCGCATAGCAGCAATGCAAGTCCAACCCACATTCGCACTCTACAATGCTAGCACTTCTGCATTATGTTGTGCGTTTTGCGTGTGATAGCGCATCTGCATTCTATTTAATACTTATGCATTCTGTAATAGGGTTTAATGAGAGTGCA

Coding sequence (CDS)

ATGGACATTCAAGTCATTCAGACAAAAGTTCTCCAACACAAAGACCAGATAACTGTTGTAGCAGCAGCTTCAGCGATTCTTTCGTTGTTCGTATACGCCGCCCCTCGGTTTCTAAGCATTCTAGCATTCTTTTGGCCTCTTTTTCTCTCGACAGCCGTACTCTTCGTGGTAATTACTGCTTTTGGAGGAGGTTTCCATGTTGGAACCGAAGGTCATGGCGTAAGAGCAGGTGAAAGGATCCTAGATTACGTAGCAGGGCGGCCTGAATACGCCGAATACCATTATAGGTACCAATAA

Protein sequence

MDIQVIQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAFGGGFHVGTEGHGVRAGERILDYVAGRPEYAEYHYRYQ

Homology

[Close]

BLAST of Sed0001266 vs. NCBI nr
Match: KAG7012637.1 (hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 4.7e-37
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MDIQVIQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITA 60
          MDIQVIQTKVLQHKDQ+TVVAA S ++SLFVYAAPRFLSILAFFWPLFLSTAVL V +TA
Sbjct: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60

Query: 61 FGGGFHVGTEGHGVRAGERILDYVAGRPEYAEYHYRYQ 99
          FGGGF VGTE HG RAGERILDYVAGRPEYAEY Y+YQ
Sbjct: 61 FGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of Sed0001266 vs. NCBI nr
Match: KAG6573520.1 (hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 84/98 (85.71%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MDIQVIQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITA 60
          MDIQVIQTKVLQHKDQ+TVVAA S ++SLFVYAAPRFLSILAFFWPLFLSTAVL V +TA
Sbjct: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60

Query: 61 FGGGFHVGTEGHGVRAGERILDYVAGRPEYAEYHYRYQ 99
          FGGGF VGTE HG +AGERILDYVAGRPEYAEY Y+YQ
Sbjct: 61 FGGGFQVGTEVHGEKAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of Sed0001266 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 8.6e-31
Identity = 75/93 (80.65%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAFGGGF 65
          IQ K+LQHKDQITVVAA S +LSLFVY APRFLSILAFFWPLF STAVL VV+TAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 HVGTEGHGVRAGERILDYVAGRPEYAEYHYRYQ 99
           VG+E HG+RAGE ILDYVAGRPE  E HY+YQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Sed0001266 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_022896 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 75/93 (80.65%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAFGGGF 65
          I  KVLQHKDQ+TVVAA S +LSLFVYAAPRFLSILAFFWPLF STAVL VV+ AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 HVGTEGHGVRAGERILDYVAGRPEYAEYHYRYQ 99
           VGTE HG+RAGE ILDYVAGRPE  E HY+YQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Sed0001266 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-19
Identity = 63/95 (66.32%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 6   IQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFV-VITAFGGG 65
           +QTKVLQ+KDQITVVAA S +LSLF          LAFFWPLF STA L V +I AF GG
Sbjct: 134 VQTKVLQNKDQITVVAAVSVVLSLF----------LAFFWPLFASTAALLVGMIAAFRGG 193

Query: 66  FHVGTEGHGVR-AGERILDYVAGRPEYAEYHYRYQ 99
           F VGT+ HGVR AGE ILDYVAGRPEY + HY+Y+
Sbjct: 194 FQVGTKIHGVRAAGEGILDYVAGRPEYGKNHYKYR 218

[Close]

BLAST of Sed0001266 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.2e-31
Identity = 75/93 (80.65%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAFGGGF 65
          IQ K+LQHKDQITVVAA S +LSLFVY APRFLSILAFFWPLF STAVL VV+TAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 HVGTEGHGVRAGERILDYVAGRPEYAEYHYRYQ 99
           VG+E HG+RAGE ILDYVAGRPE  E HY+YQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Sed0001266 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.4e-31
Identity = 75/93 (80.65%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAFGGGF 65
          I  KVLQHKDQ+TVVAA S +LSLFVYAAPRFLSILAFFWPLF STAVL VV+ AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 HVGTEGHGVRAGERILDYVAGRPEYAEYHYRYQ 99
           VGTE HG+RAGE ILDYVAGRPE  E HY+YQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Sed0001266 vs. ExPASy TrEMBL
Match: A0A396J444 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0290401 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 2   DIQVIQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAF 61
           D  V+  K+L+++ QIT+    S + SL +Y AP FL++LA+FWPLF ST V  V I AF
Sbjct: 66  DTMVLSQKLLKYRYQITIAILISLVFSLLIYGAPHFLTMLAYFWPLFASTTVFLVAIIAF 125

Query: 62  GGGFHVGTEGHGVRAGERILDYVAGRPEYAE 93
           GG     TE HG +AGE +LDYVAG+PE+ +
Sbjct: 126 GGVSKFSTESHGEKAGEGLLDYVAGKPEHTQ 156

[Close]

BLAST of Sed0001266 vs. ExPASy TrEMBL
Match: A0A151T6F9 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_017189 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.2e-15
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAFGGGF 65
          I  K+LQ++  IT+   AS   SL +YAAPRFL+ILA+FWPLF ST V  V I AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVASLSFSLLLYAAPRFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 HVGTEGHGVRAGERILDYVAGRPEYAE 93
             +E HG +AGE +LDYVAGR E+ +
Sbjct: 63 RFSSEDHGEKAGEGLLDYVAGRTEHTQ 89

[Close]

BLAST of Sed0001266 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.5e-15
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAFGGGF 65
          I  K+LQ++  +T+ A    +LSL +YAAPR ++ILAFFWPLF STAVL + I AFGG  
Sbjct: 3  IPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGGLS 62

Query: 66 HVGTEGHGVRAGERILDYVAGRPEY 91
             TE HG +AG+ IL+YV G+PE+
Sbjct: 63 QFSTEAHGAKAGQGILEYVGGQPEH 87

[Close]

BLAST of Sed0001266 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 6   IQTKVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAFGGGF 65
           IQ K+++++    V    S I++  VYAAPR L+ILA+FWPLF STA    +   FGG  
Sbjct: 124 IQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGGFQ 183

Query: 66  HVGTEGHGVRAGERILDYVAGRPE 90
            +  E      GER++DYVAGRPE
Sbjct: 184 QLSEEA----TGERLMDYVAGRPE 203

[Close]

BLAST of Sed0001266 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 6.6e-05
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 9  KVLQHKDQITVVAAASAILSLFVYAAPRFLSILAFFWPLFLSTAVLFVVITAFG------ 68
          K+L+ K QI      S +    V  +P FL++L++FWPLFLSTA+    +  F       
Sbjct: 6  KLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFARTSDLP 65

Query: 69 -GGFHVGTEGHGVR-AGERILDYVAG 87
               +  EG G++ A E ILDYV G
Sbjct: 66 VSSTIIPGEGAGLKVAAEGILDYVVG 91

The following BLAST results are available for this feature:

BLAST of Sed0001266 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012637.1	4.7e-37	86.73	hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573520.1	1.1e-36	85.71	hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0042343.1	8.6e-31	80.65	hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK1546...	[more]
KGN64996.1	1.1e-30	80.65	hypothetical protein Csa_022896 [Cucumis sativus]	[more]
KAG6583721.1	2.6e-19	66.32	hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0001266 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001266 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CU44	4.2e-31	80.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LYI8	5.4e-31	80.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1	[more]
A0A396J444	1.1e-15	50.55	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0290401 ...	[more]
A0A151T6F9	4.2e-15	55.17	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_017189 PE=4 SV=1	[more]
A0A2N9EZM9	5.5e-15	54.12	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1	[more]

BLAST of Sed0001266 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	8.6e-13	46.43	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	6.6e-05	37.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 6..92
None	No IPR available	PANTHER	PTHR34125:SF7	TRANSMEMBRANE PROTEIN	coord: 6..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001266.1	Sed0001266.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane