Sed0001259 (gene) Chayote v1

Overview
NameSed0001259
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
LocationLG12: 6076023 .. 6076284 (-)
RNA-Seq ExpressionSed0001259
SyntenySed0001259
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTAGAAGTAGTCAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTAGCCATACTGCCATTAACAAAGACAAGGGGAAATCAATCATGCAAGAAGATCACTCACAACATAATGCTTCAATTGCTACACTGTCTGTTCAACAGTTGCAAGATATGA

mRNA sequence

ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTAGAAGTAGTCAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGGGAAATCAATCATGCAAGAAGATCACTCACAACATAATGCTTCAATTGCTACACTGTCTGTTCAACAGTTGCAAGATATGA

Coding sequence (CDS)

ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTAGAAGTAGTCAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGGGAAATCAATCATGCAAGAAGATCACTCACAACATAATGCTTCAATTGCTACACTGTCTGTTCAACAGTTGCAAGATATGA

Protein sequence

MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCKKITHNIMLQLLHCLFNSCKI
Homology
BLAST of Sed0001259 vs. NCBI nr
Match: KAA0050373.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRD--------VVEGN 60
           MSVM TN  TSE+R+ E EKKI+ML++ V+E++ EI SLKN IES D         V+  
Sbjct: 82  MSVMATNMDTSEDRMTELEKKINMLIKAVEERDYEIASLKNHIESHDAAKSSHKHTVKNA 141

Query: 61  QSCKKITHNIMLQLLHCLFNSC 75
              K I   I  QL HC+F+SC
Sbjct: 142 NKGKAIMQEIQPQLHHCMFSSC 163

BLAST of Sed0001259 vs. NCBI nr
Match: KAA0033167.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK 57
           MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  E    CK
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESRDDCK 137

BLAST of Sed0001259 vs. NCBI nr
Match: TYK13602.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE---------- 60
           MSVMM +  TSE+R+ E EKKI+ML++ V+ +N EI SLKN IESRD  E          
Sbjct: 92  MSVMMIDVDTSEDRMIELEKKINMLIKAVEARNYEIASLKNHIESRDASESSHNILSRIL 151

Query: 61  --GNQSCKKITHNIMLQLL 68
             G Q CKK+ H I   ++
Sbjct: 152 TKGRQLCKKVNHKISTSIV 170

BLAST of Sed0001259 vs. NCBI nr
Match: KAA0045983.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE---------- 60
           MSVMM +  TSE+R+ E EKKI+ML++ V+ +N EI SLKN IESRD  E          
Sbjct: 96  MSVMMIDVDTSEDRMIELEKKINMLIKAVEARNYEIASLKNHIESRDASESSHNILSRIL 155

Query: 61  --GNQSCKKITHNIMLQLL 68
             G Q CKK+ H I   ++
Sbjct: 156 TKGRQLCKKVNHKISTSIV 174

BLAST of Sed0001259 vs. NCBI nr
Match: TYK29782.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK 57
           MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IES D  E    CK
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESCDAAESRDDCK 137

BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5D3BZH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00890 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-08
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRD--------VVEGN 60
           MSVM TN  TSE+R+ E EKKI+ML++ V+E++ EI SLKN IES D         V+  
Sbjct: 82  MSVMATNMDTSEDRMTELEKKINMLIKAVEERDYEIASLKNHIESHDAAKSSHKHTVKNA 141

Query: 61  QSCKKITHNIMLQLLHCLFNSC 75
              K I   I  QL HC+F+SC
Sbjct: 142 NKGKAIMQEIQPQLHHCMFSSC 163

BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5A7SV13 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1276G00080 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK 57
           MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  E    CK
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESRDDCK 137

BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5A7TQZ3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005340 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.6e-07
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE---------- 60
           MSVMM +  TSE+R+ E EKKI+ML++ V+ +N EI SLKN IESRD  E          
Sbjct: 96  MSVMMIDVDTSEDRMIELEKKINMLIKAVEARNYEIASLKNHIESRDASESSHNILSRIL 155

Query: 61  --GNQSCKKITHNIMLQLL 68
             G Q CKK+ H I   ++
Sbjct: 156 TKGRQLCKKVNHKISTSIV 174

BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5D3CQD7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001010 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.6e-07
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE---------- 60
           MSVMM +  TSE+R+ E EKKI+ML++ V+ +N EI SLKN IESRD  E          
Sbjct: 92  MSVMMIDVDTSEDRMIELEKKINMLIKAVEARNYEIASLKNHIESRDASESSHNILSRIL 151

Query: 61  --GNQSCKKITHNIMLQLL 68
             G Q CKK+ H I   ++
Sbjct: 152 TKGRQLCKKVNHKISTSIV 170

BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5D3E1L5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold857G00080 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 1   MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK 57
           MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IES D  E    CK
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESCDAAESRDDCK 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050373.11.0e-0748.78ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03586.1 ty3-gyp... [more]
KAA0033167.13.9e-0758.93ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK13602.11.1e-0646.84ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0045983.11.1e-0646.84ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK29782.13.3e-0657.14ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BZH15.0e-0848.78Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SV131.9e-0758.93Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TQZ35.6e-0746.84Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CQD75.6e-0746.84Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3E1L51.6e-0657.14Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001259.1Sed0001259.1mRNA