Sed0001259 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTAGAAGTAGTCAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTAGCCATACTGCCATTAACAAAGACAAGGGGAAATCAATCATGCAAGAAGATCACTCACAACATAATGCTTCAATTGCTACACTGTCTGTTCAACAGTTGCAAGATATGA ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTAGAAGTAGTCAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGGGAAATCAATCATGCAAGAAGATCACTCACAACATAATGCTTCAATTGCTACACTGTCTGTTCAACAGTTGCAAGATATGA ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTAGAAGTAGTCAAAGAAAAGAATGATGAAATCACTTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGGGAAATCAATCATGCAAGAAGATCACTCACAACATAATGCTTCAATTGCTACACTGTCTGTTCAACAGTTGCAAGATATGA MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCKKITHNIMLQLLHCLFNSCKI Homology
BLAST of Sed0001259 vs. NCBI nr
Match: KAA0050373.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07 Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0
BLAST of Sed0001259 vs. NCBI nr
Match: KAA0033167.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 64.7 bits (156), Expect = 3.9e-07 Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of Sed0001259 vs. NCBI nr
Match: TYK13602.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06 Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of Sed0001259 vs. NCBI nr
Match: KAA0045983.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06 Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of Sed0001259 vs. NCBI nr
Match: TYK29782.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06 Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0
BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5D3BZH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00890 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 5.0e-08 Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0
BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5A7SV13 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1276G00080 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07 Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5A7TQZ3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005340 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 5.6e-07 Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5D3CQD7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001010 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 5.6e-07 Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of Sed0001259 vs. ExPASy TrEMBL
Match: A0A5D3E1L5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold857G00080 PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06 Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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