Sed0001231 (gene) Chayote v1

Overview
NameSed0001231
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTransmembrane protein
LocationLG04: 28370790 .. 28373169 (+)
RNA-Seq ExpressionSed0001231
SyntenySed0001231
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACGGTTTTACCCTTTATTTCTTTCACTCATATTCATCAAAGGGTCCGCCAGTTCGTCAAAGTCGCGATCGTCTTTTCCAATCTCTCTGCAAATCGGATTCGAAAATGGTAAAACCCTAAATTTCTTCAGATTTGTAGCTTGGATTCTTCTCTTACGCTTAGTTTTTACGTTTGATTAGGTTTGCTTGGCGTGTTTATTGCCTCTGTTTCTCATTCCTGTCGTCAACGCTCTGCCTGTTCTGTTCTACATAATTATGGTATGCTAATATGATTCAATTCCCTTTAGGATCTAATATTTTTGTCTGTTCGTCAAATTCGCTTCATGATTTGGGTTTTCTGTACCATTGAAGGGAATTTTTGCTGATATTTATTTTTCCCCCTTTTTGGTTTTTCTTCAATTTTCTGCTAGGGCAAAATTTATGGAATTTTTGGCTGGGAATATAGAAAACCACAGAGGGTGCCGCCGGCTTGTCCTTATCGCCCTGCTGCTAAGCAAAATAGCAATGTGAGTGTCCTGTTATTGCTTGCTTCTACGTTATTTCTGATTTCCATTTGATTTAAGGCTGCTCATTGTGATGATAGTTTTCAAAAGCAATGAATGGAGTCTTTGCACCTGCTGTATGTGTTTGTTTATTGATTCCTCAACTATCATTTCAATTGTTTGAGCATACTGAGGATTTTTTACAGGGTTGTGCTGGGTTGTTTTTGTTGTGTCTACTAGCTCGGTCTTTGTTCTTGATCTTCTTATTTATGATTTTCTTCATGTTGAATGAATGCTTGTTGATATTTGCTACGGTAGTTTTCAAAAGCAAATAGGTATCTTCTATCGAGTTTAGATTTTGGGCAGTGATAGGATATTCTATTCTCTTTGGTATGTGGAGGTAGATACATGTTTCCAGTTTACTAGATCAGGGATAAAAGTCAATTCCCTTTAGGACATCATAAAAAAATGATATGCATGTTTGAAATAATATTTAGCTATGGTCCCCCAGGGGTGCTGCAATAGTTGAAGACTTGGACTTTGAGGGTATGTTCCCCTCAAGGTCCCGGGTTTGAGACTCATTTGTGACATTACTCCTTCGATATCTATGGTGCCAGACTTAGGGACGGGCTTGGTTACCTTGTTTCAAAAAAAAAAAAATGATATTTAGCCATGATTATAAATTTAGATCATAATGTTGATTAGGTACTTGTGAGTCTGTGACCAGTATGTTTTCATGGTAGGATAGTTTTAGATTAGTAATGACAACTTAAACAGGTTCAATTTTAGAGGTCATAATATTTTTCGTTCTTGAGTTATGAGGTGGTTTTTGGAAAAAAGATTACAAGATAACCATTCAAAGGTTTTCTTAAGCTGATGCCTGAGGCTCACTCTGTGGACTGTGGCAATGTTCTAATGTAGGTTTGAGATTTTCTCCTTGACAATAAGAGGGTTATGGCCCATGAAAATGTACTAAGGCTCAAAATTGATTAAAATAATACTATTAAAATATCCCATTCTTAAAAAATATGAAGGTTCCTTTGTAATGGTAATATTAATATATGAATGGGAGCAATTCAACCTATTACTAATTTTACTATCCCGCCTCTAAAAACATCGAAGAAAAATTCATGGAATAAGTCTATTCTACACATGATAATAGTGGTAAGGTTAAGAATCACCTAATAAAATTTAGCCTTTTAAAATATTGGCACAGGGTCTTAGGACCTGCCGGAATCGCTCTTTCAATTTGATGACATTCATATATTTTTCTCCTCCACCAATTTTCTGTACCTTAAACTGATAATGATTCCATGAGTATACTCAAGCTACAGAAAAACTTCAAAGATTCATTGCAAACTAACCCTGAGAATAAGGAGTATGGACATAACTATATGTGTTTTCACCTGTGTAAACGAGGTGTTTATTTGTATTTGTTTGTATTTTGGTGTTTTCTTATGTCAGGCTTGTTAACAACATATATGTGGGGTGTTCGATATTAGACCTATCGTTTTGTGGTTTTATTTTGCAAGGTTTGCTCCTCTGGCTGCTTGAATGTAACAAGCTTTTTCTTAATCTTAACAGGAAGAGTTAGAACCTCTAGCTGGTCAGCAACATCCACAACCTCCAAAAGCCGTGGATGCAAAGCAAGATTGAATCTGGAAATATCTGTTGTACATAGCTGTCAGCCAGAACGAAAGATCTTTGTGGCCCTGAAAGCAGTGGACTCTGTCGATTTTAGGAAGCTATGATTTCCAATCGGTCAGATAAAATATATTTTATATTCTCGTTATTAATAGCATCAATACAGTTTATCTTTTCAGTGCATGCTTTCTGAATAACATCATTATAGACATTGTGTTTATGCTTTCTGAATAATTTAGCTGCATGGCTTGGATA

mRNA sequence

GACGGTTTTACCCTTTATTTCTTTCACTCATATTCATCAAAGGGTCCGCCAGTTCGTCAAAGTCGCGATCGTCTTTTCCAATCTCTCTGCAAATCGGATTCGAAAATGGTTTGCTTGGCGTGTTTATTGCCTCTGTTTCTCATTCCTGTCGTCAACGCTCTGCCTGTTCTGTTCTACATAATTATGGGCAAAATTTATGGAATTTTTGGCTGGGAATATAGAAAACCACAGAGGGTGCCGCCGGCTTGTCCTTATCGCCCTGCTGCTAAGCAAAATAGCAATGAAGAGTTAGAACCTCTAGCTGGTCAGCAACATCCACAACCTCCAAAAGCCGTGGATGCAAAGCAAGATTGAATCTGGAAATATCTGTTGTACATAGCTGTCAGCCAGAACGAAAGATCTTTGTGGCCCTGAAAGCAGTGGACTCTGTCGATTTTAGGAAGCTATGATTTCCAATCGGTCAGATAAAATATATTTTATATTCTCGTTATTAATAGCATCAATACAGTTTATCTTTTCAGTGCATGCTTTCTGAATAACATCATTATAGACATTGTGTTTATGCTTTCTGAATAATTTAGCTGCATGGCTTGGATA

Coding sequence (CDS)

ATGGTTTGCTTGGCGTGTTTATTGCCTCTGTTTCTCATTCCTGTCGTCAACGCTCTGCCTGTTCTGTTCTACATAATTATGGGCAAAATTTATGGAATTTTTGGCTGGGAATATAGAAAACCACAGAGGGTGCCGCCGGCTTGTCCTTATCGCCCTGCTGCTAAGCAAAATAGCAATGAAGAGTTAGAACCTCTAGCTGGTCAGCAACATCCACAACCTCCAAAAGCCGTGGATGCAAAGCAAGATTGA

Protein sequence

MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNEELEPLAGQQHPQPPKAVDAKQD
Homology
BLAST of Sed0001231 vs. NCBI nr
Match: XP_038903023.1 (uncharacterized protein LOC120089725 [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLFY+IMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPQPPKAVDA---KQD 83
          +LEPLAGQQHP PPKAVDA   KQD
Sbjct: 61 DLEPLAGQQHP-PPKAVDAADEKQD 84

BLAST of Sed0001231 vs. NCBI nr
Match: XP_008442719.1 (PREDICTED: uncharacterized protein LOC103486509 [Cucumis melo] >XP_011651967.1 uncharacterized protein LOC105434961 [Cucumis sativus] >KGN58993.1 hypothetical protein Csa_002586 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLFY+IMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPQPPKAVDAKQD 83
          ELEPLAGQQHP PPK VDA  D
Sbjct: 61 ELEPLAGQQHP-PPKPVDAMDD 81

BLAST of Sed0001231 vs. NCBI nr
Match: XP_023538875.1 (uncharacterized protein LOC111799671 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF++IMGKIY IFGWEYRKPQ VPPACPYRPAAKQNSNE
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFHLIMGKIYRIFGWEYRKPQGVPPACPYRPAAKQNSNE 60

Query: 61 ELEPLAGQQHPQPPK---AVDAKQD 83
          ELEPLAGQQHP PPK   AVDAKQD
Sbjct: 61 ELEPLAGQQHP-PPKAVDAVDAKQD 84

BLAST of Sed0001231 vs. NCBI nr
Match: XP_022983172.1 (uncharacterized protein LOC111481805 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 3.2e-31
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF +IMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPQPPKAVDAKQD 83
          ELEPLAGQQ P PPK VD KQD
Sbjct: 61 ELEPLAGQQLP-PPKVVDEKQD 81

BLAST of Sed0001231 vs. NCBI nr
Match: KAG6596489.1 (hypothetical protein SDJN03_09669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.1 bits (362), Expect = 5.5e-31
Identity = 75/85 (88.24%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL+++IMGKIY IFGWEY KPQRVPPACPYRPAAKQNSNE
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60

Query: 61 ELEPLAGQQHPQPPKAV---DAKQD 83
          EL+PLAGQQHP PPKAV   DAKQD
Sbjct: 61 ELQPLAGQQHP-PPKAVDAEDAKQD 84

BLAST of Sed0001231 vs. ExPASy TrEMBL
Match: A0A0A0LB44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.4e-32
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLFY+IMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPQPPKAVDAKQD 83
          ELEPLAGQQHP PPK VDA  D
Sbjct: 61 ELEPLAGQQHP-PPKPVDAMDD 81

BLAST of Sed0001231 vs. ExPASy TrEMBL
Match: A0A1S3B744 (uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.4e-32
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLFY+IMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPQPPKAVDAKQD 83
          ELEPLAGQQHP PPK VDA  D
Sbjct: 61 ELEPLAGQQHP-PPKPVDAMDD 81

BLAST of Sed0001231 vs. ExPASy TrEMBL
Match: A0A6J1IYJ1 (uncharacterized protein LOC111481805 OS=Cucurbita maxima OX=3661 GN=LOC111481805 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF +IMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPQPPKAVDAKQD 83
          ELEPLAGQQ P PPK VD KQD
Sbjct: 61 ELEPLAGQQLP-PPKVVDEKQD 81

BLAST of Sed0001231 vs. ExPASy TrEMBL
Match: A0A6J1CU80 (uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014385 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.3e-30
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLFY+IMGKIYG+FGWEYRKP+RVPPACPYRPAAKQN N 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPERVPPACPYRPAAKQNGNV 60

Query: 61 ELEPLAGQQHPQPP--KAVDAKQD 83
          ELEP AGQQHP P    AVD K+D
Sbjct: 61 ELEPQAGQQHPLPKAVDAVDTKED 84

BLAST of Sed0001231 vs. ExPASy TrEMBL
Match: A0A6J1F5U6 (uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442415 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.9e-30
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF +IMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNA 60

Query: 61 ELEPLAGQQHPQPPKAVDAKQD 83
          ELEP AGQQ P PPK VDA  D
Sbjct: 61 ELEPPAGQQLP-PPKVVDAMDD 81

BLAST of Sed0001231 vs. TAIR 10
Match: AT5G03460.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-14
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1  MVCLACLLPLFLIPVVNALPVLFYIIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNS 59
          MVC+ CL+PLFL+P++N +P +    M K+Y   GWEYRKP RVPPACP++P AK ++
Sbjct: 1  MVCVMCLVPLFLVPLINLMPRIIDYFMAKLYAWLGWEYRKPARVPPACPFKPVAKNDN 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903023.11.0e-3291.76uncharacterized protein LOC120089725 [Benincasa hispida][more]
XP_008442719.11.1e-3190.24PREDICTED: uncharacterized protein LOC103486509 [Cucumis melo] >XP_011651967.1 u... [more]
XP_023538875.11.5e-3190.59uncharacterized protein LOC111799671 [Cucurbita pepo subsp. pepo][more]
XP_022983172.13.2e-3191.46uncharacterized protein LOC111481805 [Cucurbita maxima][more]
KAG6596489.15.5e-3188.24hypothetical protein SDJN03_09669, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LB445.4e-3290.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1[more]
A0A1S3B7445.4e-3290.24uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=... [more]
A0A6J1IYJ11.6e-3191.46uncharacterized protein LOC111481805 OS=Cucurbita maxima OX=3661 GN=LOC111481805... [more]
A0A6J1CU802.3e-3084.52uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1F5U63.9e-3089.02uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
Match NameE-valueIdentityDescription
AT5G03460.12.2e-1455.17unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..82
NoneNo IPR availablePANTHERPTHR37756TRANSMEMBRANE PROTEINcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001231.1Sed0001231.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane