Sed0001222 (gene) Chayote v1

Overview


Name	Sed0001222
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG09: 29779210 .. 29780227 (-)
RNA-Seq Expression	Sed0001222
Synteny	Sed0001222

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAAGCAGAGACCTTGAAGCTCTCAATTTCTTCATCCTTTTCTCTGTTTTCTTTATAATTTCCGAATTCAATGCTTCCGTTGTTTCGAATTGAATTAATTTACTTATTTTCCCGAGAAAATTCGGATTTTTCTTCTTGTTGAAGATTTGGGTTTTTTTCTATTTTTTTTAGTTGGGTTTTTTTTTTCTGTGATAATTAATGGAAAGTGGTCGCCGGAGAATTACACTTTATGATCAGATGTTAGCGGTCGGCGACGGCCGAGAGCTCACCGGCGGTTTGACACTGAACGACGTTTTGAGCACTCATAAGAGTTCCTCGCCGAGCCCTTCGCCGGCGGTGAGGCTGAACGGCCGGACTTTGCTCGATATTATCAAAGACGACGTCGGAAAATCCCCCGCCGGTAACAGAGAGAGAAAATCTTGGAAATTTTTGAGAGATCGGCTCCGTTTGAATCCCAGATCTCACATTCCGCCGCCGAACTCGCTTCGTTTCGCCGCTTTTCTGACGGCGGAGATGTCGCCCACCGAAGAACAATCGCCGGAATCCACCGCCGGCGTCCAGGATCTCCGGCTGATTTCGAGGCGGAATTCGACGAGCTCCAACCAGAACACGCCGCCGTCTTCCGAAGCTACAAATTCCGACCACCCACCGGCGACCAACATCTACGCCGCCACCGTCGCCGCCGACGAGGAAGAAGAAGTTTCCACGGAGGCGGATACGGCGGCGCCGGTGAGAATGTCACTGATGGATCTGTTAGAAGAGACGGACAGGCAAATGGGGTTGGAAGCAATAGAAGAAAAAGAAGATGTTGATGGTGAAGTCGCCGCCGTATGCGGCGGCGGAACGGAACGGAAGTGCTGCGTGTGTATGGTGCGTGATAAAGGGGCGGCATTTATCCCCTGTGGACACACTTTCTGTAGGCTCTGTTCAAGAGAACTTTGGGTCAATAGAGGGAATTGTCCACTTTGTAATGCCCACATTTTAGAGATTCTTGACATCTTCTAATTTTTCCAATT

mRNA sequence

TTTTAAGCAGAGACCTTGAAGCTCTCAATTTCTTCATCCTTTTCTCTGTTTTCTTTATAATTTCCGAATTCAATGCTTCCGTTGTTTCGAATTGAATTAATTTACTTATTTTCCCGAGAAAATTCGGATTTTTCTTCTTGTTGAAGATTTGGGTTTTTTTCTATTTTTTTTAGTTGGGTTTTTTTTTTCTGTGATAATTAATGGAAAGTGGTCGCCGGAGAATTACACTTTATGATCAGATGTTAGCGGTCGGCGACGGCCGAGAGCTCACCGGCGGTTTGACACTGAACGACGTTTTGAGCACTCATAAGAGTTCCTCGCCGAGCCCTTCGCCGGCGGTGAGGCTGAACGGCCGGACTTTGCTCGATATTATCAAAGACGACGTCGGAAAATCCCCCGCCGGTAACAGAGAGAGAAAATCTTGGAAATTTTTGAGAGATCGGCTCCGTTTGAATCCCAGATCTCACATTCCGCCGCCGAACTCGCTTCGTTTCGCCGCTTTTCTGACGGCGGAGATGTCGCCCACCGAAGAACAATCGCCGGAATCCACCGCCGGCGTCCAGGATCTCCGGCTGATTTCGAGGCGGAATTCGACGAGCTCCAACCAGAACACGCCGCCGTCTTCCGAAGCTACAAATTCCGACCACCCACCGGCGACCAACATCTACGCCGCCACCGTCGCCGCCGACGAGGAAGAAGAAGTTTCCACGGAGGCGGATACGGCGGCGCCGGTGAGAATGTCACTGATGGATCTGTTAGAAGAGACGGACAGGCAAATGGGGTTGGAAGCAATAGAAGAAAAAGAAGATGTTGATGGTGAAGTCGCCGCCGTATGCGGCGGCGGAACGGAACGGAAGTGCTGCGTGTGTATGGTGCGTGATAAAGGGGCGGCATTTATCCCCTGTGGACACACTTTCTGTAGGCTCTGTTCAAGAGAACTTTGGGTCAATAGAGGGAATTGTCCACTTTGTAATGCCCACATTTTAGAGATTCTTGACATCTTCTAATTTTTCCAATT

Coding sequence (CDS)

ATGGAAAGTGGTCGCCGGAGAATTACACTTTATGATCAGATGTTAGCGGTCGGCGACGGCCGAGAGCTCACCGGCGGTTTGACACTGAACGACGTTTTGAGCACTCATAAGAGTTCCTCGCCGAGCCCTTCGCCGGCGGTGAGGCTGAACGGCCGGACTTTGCTCGATATTATCAAAGACGACGTCGGAAAATCCCCCGCCGGTAACAGAGAGAGAAAATCTTGGAAATTTTTGAGAGATCGGCTCCGTTTGAATCCCAGATCTCACATTCCGCCGCCGAACTCGCTTCGTTTCGCCGCTTTTCTGACGGCGGAGATGTCGCCCACCGAAGAACAATCGCCGGAATCCACCGCCGGCGTCCAGGATCTCCGGCTGATTTCGAGGCGGAATTCGACGAGCTCCAACCAGAACACGCCGCCGTCTTCCGAAGCTACAAATTCCGACCACCCACCGGCGACCAACATCTACGCCGCCACCGTCGCCGCCGACGAGGAAGAAGAAGTTTCCACGGAGGCGGATACGGCGGCGCCGGTGAGAATGTCACTGATGGATCTGTTAGAAGAGACGGACAGGCAAATGGGGTTGGAAGCAATAGAAGAAAAAGAAGATGTTGATGGTGAAGTCGCCGCCGTATGCGGCGGCGGAACGGAACGGAAGTGCTGCGTGTGTATGGTGCGTGATAAAGGGGCGGCATTTATCCCCTGTGGACACACTTTCTGTAGGCTCTGTTCAAGAGAACTTTGGGTCAATAGAGGGAATTGTCCACTTTGTAATGCCCACATTTTAGAGATTCTTGACATCTTCTAA

Protein sequence

MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKDDVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPESTAGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAADEEEEVSTEADTAAPVRMSLMDLLEETDRQMGLEAIEEKEDVDGEVAAVCGGGTERKCCVCMVRDKGAAFIPCGHTFCRLCSRELWVNRGNCPLCNAHILEILDIF

Homology

[Close]

BLAST of Sed0001222 vs. NCBI nr
Match: XP_023522866.1 (chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346.3 bits (887), Expect = 2.4e-91
Identity = 205/361 (56.79%), Postives = 224/361 (62.05%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYDQMLAVG+GRELTGGLTLNDVL+ HK +SP+PSP VRLNGRTLLDI++D
Sbjct: 1   MEGGRRRITLYDQMLAVGEGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSPA-GNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST-- 120
           DVGKSPA GNRERKSWKFLRDRLRLN RS IPPPNSLRFA F +AEM+  EE+SPEST  
Sbjct: 61  DVGKSPAVGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTP 120

Query: 121 ---AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAA------------ 180
              A V  LR ISRR+ST  +QN P S EATNS   P  N  A+T+A             
Sbjct: 121 VVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSSRSLLRP 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 --DEEEEVSTEADTAAPVRMSLMDLLEETDRQMGLEAI-------------EEKEDVDGE 269
             D+EE  ST  +TAAPVRMSLMDLLEETDRQMG E               EE+E+   E
Sbjct: 241 DEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEKEE 300

[Close]

BLAST of Sed0001222 vs. NCBI nr
Match: XP_022960262.1 (chromo domain-containing protein cec-1-like [Cucurbita moschata] >KAG7025412.1 hypothetical protein SDJN02_11907, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.7 bits (883), Expect = 7.0e-91
Identity = 205/362 (56.63%), Postives = 223/362 (61.60%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYDQMLAVGDGRELTGGLTLNDVL+ HK +SP+PSP VRLNGRTLLDI++D
Sbjct: 1   MEGGRRRITLYDQMLAVGDGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSPA-GNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST-- 120
           DVGKSPA GNRERKSWKFLRDRLRLN RS IPPPNSLRFA F +AEM+  EE+SPEST  
Sbjct: 61  DVGKSPAVGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTP 120

Query: 121 ---AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVA------------- 180
              A V  LR ISRR+ST  +QN P S EATNS   P  N   +T+A             
Sbjct: 121 VVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSSRSLLRP 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 -ADEEEEVSTEADTAAPVRMSLMDLLEETDRQMGLEAI--------------EEKEDVDG 269
             D+EE  ST  +TAAPVRMSLMDLLEETDRQMG E                EE+E+   
Sbjct: 241 DEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEEKE 300

[Close]

BLAST of Sed0001222 vs. NCBI nr
Match: KAA0026218.1 (nucleolin-like [Cucumis melo var. makuwa] >TYK30738.1 nucleolin-like [Cucumis melo var. makuwa])

HSP 1 Score: 343.2 bits (879), Expect = 2.0e-90
Identity = 201/358 (56.15%), Postives = 218/358 (60.89%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYDQMLAV DGREL  G TLNDVL+  K +SPSPSPAVRL+GRTLLDII+D
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST--- 120
           DVGKSP  NRERKSWKFLRDRLRLN RS IPPPNSLRF  F +AEM P +EQSPE T   
Sbjct: 61  DVGKSPVSNRERKSWKFLRDRLRLNLRSQIPPPNSLRFPGFTSAEMMPNDEQSPEPTTTA 120

Query: 121 --AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAA----------------- 180
             +    LR ISRRNST  N + PPSSEATNSD  P  N  AA                 
Sbjct: 121 AVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGGGGRSLLRPQMSRH 180

Query: 181 ----------------------------------------------------TVAADEEE 240
                                                                +A  EE+
Sbjct: 181 NSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEEQ 240

Query: 241 EVSTEAD-TAAPVRMSLMDLLEETDRQMGLEAI-----------EEKEDVDGEVAAVC-- 269
           E   EA+ T AP+RMSLMDLLEETDRQMG E             EE+E+++ EV  VC  
Sbjct: 241 EEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEEEEIENEVTTVCGG 300

[Close]

BLAST of Sed0001222 vs. NCBI nr
Match: XP_023004831.1 (nucleolin-like [Cucurbita maxima])

HSP 1 Score: 342.8 bits (878), Expect = 2.6e-90
Identity = 204/362 (56.35%), Postives = 225/362 (62.15%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYD+MLAVGDGRE+TGGLTLNDVL+ HK +SP+PSP VRLNGRTLLDI++D
Sbjct: 1   MEGGRRRITLYDRMLAVGDGREVTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSP-AGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST-- 120
           DVGKSP AGNRERKSWKFLRDRLRLN RS IPPPNSLRFA F +AEM+  EEQSPEST  
Sbjct: 61  DVGKSPAAGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEQSPESTTP 120

Query: 121 ---AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAA------------ 180
              A V  LR ISRRNST  +QN P S EATNS   P  N   +T+A             
Sbjct: 121 VVAAAVPVLRQISRRNSTRLSQNIPTSPEATNSGESPENNNSDSTIAGTGSRSSRSLLRP 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 --DEEEEVSTEADTAAPVRMSLMDLLEETDRQMGLEA--------IEEKEDVDGE----- 269
             D+EE  ST  +TAAPVRMSLMDLLEETDRQMG E         +EE+E+ + E     
Sbjct: 241 NEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEDEEKE 300

[Close]

BLAST of Sed0001222 vs. NCBI nr
Match: XP_008458019.1 (PREDICTED: nucleolin-like [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 4.5e-90
Identity = 198/358 (55.31%), Postives = 215/358 (60.06%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYDQMLAV DGREL  G TLNDVL+  K +SPSPSPAVRL+GRTLLDII+D
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST--- 120
           DVGKSP  NRERKSWKFLRDRLRLN RS IPPPNSLRF  F +A+M P +EQSPE T   
Sbjct: 61  DVGKSPVSNRERKSWKFLRDRLRLNLRSQIPPPNSLRFPGFTSADMMPNDEQSPEPTTTA 120

Query: 121 --AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAA------------- 180
             +    LR ISRRNST  N + PPSSEATNSD  P  N  AA   A             
Sbjct: 121 AVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGAGGRSLLRPQMSRH 180

Query: 181 ---------------------------------------------------------DEE 240
                                                                    +E+
Sbjct: 181 NSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEEQ 240

Query: 241 EEVSTEADTAAPVRMSLMDLLEETDRQMGLEAI-----------EEKEDVDGEVAAVC-- 269
           EE      T AP+RMSLMDLLEETDRQMG E             EE+E+++ EV  VC  
Sbjct: 241 EEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEEEEIENEVTTVCGG 300

[Close]

BLAST of Sed0001222 vs. ExPASy TrEMBL
Match: A0A6J1H6Y3 (chromo domain-containing protein cec-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461059 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 3.4e-91
Identity = 205/362 (56.63%), Postives = 223/362 (61.60%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYDQMLAVGDGRELTGGLTLNDVL+ HK +SP+PSP VRLNGRTLLDI++D
Sbjct: 1   MEGGRRRITLYDQMLAVGDGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSPA-GNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST-- 120
           DVGKSPA GNRERKSWKFLRDRLRLN RS IPPPNSLRFA F +AEM+  EE+SPEST  
Sbjct: 61  DVGKSPAVGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTP 120

Query: 121 ---AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVA------------- 180
              A V  LR ISRR+ST  +QN P S EATNS   P  N   +T+A             
Sbjct: 121 VVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSSRSLLRP 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 -ADEEEEVSTEADTAAPVRMSLMDLLEETDRQMGLEAI--------------EEKEDVDG 269
             D+EE  ST  +TAAPVRMSLMDLLEETDRQMG E                EE+E+   
Sbjct: 241 DEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEEKE 300

[Close]

BLAST of Sed0001222 vs. ExPASy TrEMBL
Match: A0A5D3E4J3 (Nucleolin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00730 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 9.8e-91
Identity = 201/358 (56.15%), Postives = 218/358 (60.89%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYDQMLAV DGREL  G TLNDVL+  K +SPSPSPAVRL+GRTLLDII+D
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST--- 120
           DVGKSP  NRERKSWKFLRDRLRLN RS IPPPNSLRF  F +AEM P +EQSPE T   
Sbjct: 61  DVGKSPVSNRERKSWKFLRDRLRLNLRSQIPPPNSLRFPGFTSAEMMPNDEQSPEPTTTA 120

Query: 121 --AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAA----------------- 180
             +    LR ISRRNST  N + PPSSEATNSD  P  N  AA                 
Sbjct: 121 AVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGGGGRSLLRPQMSRH 180

Query: 181 ----------------------------------------------------TVAADEEE 240
                                                                +A  EE+
Sbjct: 181 NSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEEQ 240

Query: 241 EVSTEAD-TAAPVRMSLMDLLEETDRQMGLEAI-----------EEKEDVDGEVAAVC-- 269
           E   EA+ T AP+RMSLMDLLEETDRQMG E             EE+E+++ EV  VC  
Sbjct: 241 EEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEEEEIENEVTTVCGG 300

[Close]

BLAST of Sed0001222 vs. ExPASy TrEMBL
Match: A0A6J1KT79 (nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111498015 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.3e-90
Identity = 204/362 (56.35%), Postives = 225/362 (62.15%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYD+MLAVGDGRE+TGGLTLNDVL+ HK +SP+PSP VRLNGRTLLDI++D
Sbjct: 1   MEGGRRRITLYDRMLAVGDGREVTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSP-AGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST-- 120
           DVGKSP AGNRERKSWKFLRDRLRLN RS IPPPNSLRFA F +AEM+  EEQSPEST  
Sbjct: 61  DVGKSPAAGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEQSPESTTP 120

Query: 121 ---AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAA------------ 180
              A V  LR ISRRNST  +QN P S EATNS   P  N   +T+A             
Sbjct: 121 VVAAAVPVLRQISRRNSTRLSQNIPTSPEATNSGESPENNNSDSTIAGTGSRSSRSLLRP 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 --DEEEEVSTEADTAAPVRMSLMDLLEETDRQMGLEA--------IEEKEDVDGE----- 269
             D+EE  ST  +TAAPVRMSLMDLLEETDRQMG E         +EE+E+ + E     
Sbjct: 241 NEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEDEEKE 300

[Close]

BLAST of Sed0001222 vs. ExPASy TrEMBL
Match: A0A1S3C6E1 (nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 2.2e-90
Identity = 198/358 (55.31%), Postives = 215/358 (60.06%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYDQMLAV DGREL  G TLNDVL+  K +SPSPSPAVRL+GRTLLDII+D
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST--- 120
           DVGKSP  NRERKSWKFLRDRLRLN RS IPPPNSLRF  F +A+M P +EQSPE T   
Sbjct: 61  DVGKSPVSNRERKSWKFLRDRLRLNLRSQIPPPNSLRFPGFTSADMMPNDEQSPEPTTTA 120

Query: 121 --AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAA------------- 180
             +    LR ISRRNST  N + PPSSEATNSD  P  N  AA   A             
Sbjct: 121 AVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGAGGRSLLRPQMSRH 180

Query: 181 ---------------------------------------------------------DEE 240
                                                                    +E+
Sbjct: 181 NSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEEQ 240

Query: 241 EEVSTEADTAAPVRMSLMDLLEETDRQMGLEAI-----------EEKEDVDGEVAAVC-- 269
           EE      T AP+RMSLMDLLEETDRQMG E             EE+E+++ EV  VC  
Sbjct: 241 EEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEEEEIENEVTTVCGG 300

[Close]

BLAST of Sed0001222 vs. ExPASy TrEMBL
Match: A0A0A0K6R9 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 3.2e-81
Identity = 186/355 (52.39%), Postives = 208/355 (58.59%), Query Frame = 0


Query: 1   MESGRRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKSSSPSPSPAVRLNGRTLLDIIKD 60
           ME GRRRITLYDQMLAV DGR+L GG TLNDVL+  K + PS SPAVRL+GRTLLDII+D
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRDLAGGFTLNDVLAIQKRALPSSSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPEST--- 120
           DVGKSP  NRER SWKF RDRLRL+ RS IPP NSLRF    +AEM   +E SPE T   
Sbjct: 61  DVGKSPVSNRERTSWKFFRDRLRLSIRSQIPPSNSLRFPGLTSAEMMSNDEHSPEPTTTA 120

Query: 121 --AGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYA------------------ 180
             +    LR ISRRNST  N +  PSSEATNS+  P  N  A                  
Sbjct: 121 AVSAAPSLRQISRRNSTRLNPSVQPSSEATNSNASPDNNSAAAASGSGGRSLLRPQMSRH 180

Query: 181 ----------------------------------------------------ATVAADEE 240
                                                               ATV  +E+
Sbjct: 181 NSTRFSVERSESFTDLTEPTREGTRRLSAALAEERSMSAREAVTAQEAADAEATVDEEEQ 240

Query: 241 EEVSTEADTAAPVRMSLMDLLEETDRQMGLEAI-------EEKEDVDGEVA-AVCG---- 269
           ++      T APVRMSLMDLLEETDRQMG E         +E+E+++ EV+  VCG    
Sbjct: 241 QQEQVAESTPAPVRMSLMDLLEETDRQMGFEGSTYRIEDEDEEEEIENEVSTTVCGGGGS 300

[Close]

BLAST of Sed0001222 vs. TAIR 10
Match: AT4G13100.1 (RING/U-box superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 7.5e-35
Identity = 109/284 (38.38%), Postives = 154/284 (54.23%), Query Frame = 0


Query: 1   MESG-RRRITLYDQMLAVGDGRELTGGLTLNDVL----STHKSSSPSPSPAVRLNGRTLL 60
           M+ G R R+TL D+M  V +GR     +TL D+L    S+ +S +   +P    +  +LL
Sbjct: 4   MDGGDRLRVTLLDRMSTVENGR---SSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLL 63

Query: 61  DIIKDDVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQ--- 120
           D+++ +        R++ +WK LRD+LRL   +            ++++   PT +    
Sbjct: 64  DVMRRE------RRRDKTAWKSLRDKLRLKRTA----------TGWISSNPIPTLDNHIL 123

Query: 121 SPESTAGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAADEEEEVSTEA 180
           +P++ +  +  RL     ++ +N+++   S+A          +   TV A E EE+    
Sbjct: 124 TPDNDSH-RFNRLGFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREEMQ--- 183

Query: 181 DTAAPVRMSLMDLLEETDRQM-GLEAIEEKE-------DVDGEVAAVCGGGTERKCCVCM 240
               P RMSLM+LLE+ D  M  L A +E E       D  GE  AV  G  E  CCVCM
Sbjct: 184 ----PPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVT-GAAELGCCVCM 243

Query: 241 VRDKGAAFIPCGHTFCRLCSRELWVNRGNCPLCNAHILEILDIF 269
           VR KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  IL++LDIF
Sbjct: 244 VRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 259

[Close]

BLAST of Sed0001222 vs. TAIR 10
Match: AT4G13100.4 (RING/U-box superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 7.5e-35
Identity = 109/284 (38.38%), Postives = 154/284 (54.23%), Query Frame = 0


Query: 1   MESG-RRRITLYDQMLAVGDGRELTGGLTLNDVL----STHKSSSPSPSPAVRLNGRTLL 60
           M+ G R R+TL D+M  V +GR     +TL D+L    S+ +S +   +P    +  +LL
Sbjct: 1   MDGGDRLRVTLLDRMSTVENGR---SSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLL 60

Query: 61  DIIKDDVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQ--- 120
           D+++ +        R++ +WK LRD+LRL   +            ++++   PT +    
Sbjct: 61  DVMRRE------RRRDKTAWKSLRDKLRLKRTA----------TGWISSNPIPTLDNHIL 120

Query: 121 SPESTAGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAADEEEEVSTEA 180
           +P++ +  +  RL     ++ +N+++   S+A          +   TV A E EE+    
Sbjct: 121 TPDNDSH-RFNRLGFLLTNSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREEMQ--- 180

Query: 181 DTAAPVRMSLMDLLEETDRQM-GLEAIEEKE-------DVDGEVAAVCGGGTERKCCVCM 240
               P RMSLM+LLE+ D  M  L A +E E       D  GE  AV  G  E  CCVCM
Sbjct: 181 ----PPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVT-GAAELGCCVCM 240

Query: 241 VRDKGAAFIPCGHTFCRLCSRELWVNRGNCPLCNAHILEILDIF 269
           VR KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  IL++LDIF
Sbjct: 241 VRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 256

[Close]

BLAST of Sed0001222 vs. TAIR 10
Match: AT4G13100.3 (RING/U-box superfamily protein )

HSP 1 Score: 142.1 bits (357), Expect = 6.4e-34
Identity = 111/287 (38.68%), Postives = 150/287 (52.26%), Query Frame = 0


Query: 1   MESG-RRRITLYDQMLAVGDGRELTGGLTLNDVL----STHKSSSPSPSPAVRLNGRTLL 60
           M+ G R R+TL D+M  V +GR     +TL D+L    S+ +S +   +P    +  +LL
Sbjct: 4   MDGGDRLRVTLLDRMSTVENGR---SSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLL 63

Query: 61  DIIKDDVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQ--- 120
           D+++ +        R++ +WK LRD+LRL   +            ++++   PT +    
Sbjct: 64  DVMRRE------RRRDKTAWKSLRDKLRLKRTA----------TGWISSNPIPTLDNHIL 123

Query: 121 SPESTAGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAADEEEEVSTEA 180
           +P++     D    +R     +N  T  SS   +          AA  AA+ E  +    
Sbjct: 124 TPDN-----DSHRFNRLGFLLTNSETNRSSRDVSD---------AAEEAAEREGRLRLGT 183

Query: 181 DTAA---PVRMSLMDLLEETDRQM-GLEAIEEKE-------DVDGEVAAVCGGGTERKCC 240
             AA   P RMSLM+LLE+ D  M  L A +E E       D  GE  AV  G  E  CC
Sbjct: 184 VLAAEREPPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVT-GAAELGCC 243

Query: 241 VCMVRDKGAAFIPCGHTFCRLCSRELWVNRGNCPLCNAHILEILDIF 269
           VCMVR KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  IL++LDIF
Sbjct: 244 VCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 256

[Close]

BLAST of Sed0001222 vs. TAIR 10
Match: AT4G13100.5 (RING/U-box superfamily protein )

HSP 1 Score: 142.1 bits (357), Expect = 6.4e-34
Identity = 111/287 (38.68%), Postives = 150/287 (52.26%), Query Frame = 0


Query: 1   MESG-RRRITLYDQMLAVGDGRELTGGLTLNDVL----STHKSSSPSPSPAVRLNGRTLL 60
           M+ G R R+TL D+M  V +GR     +TL D+L    S+ +S +   +P    +  +LL
Sbjct: 4   MDGGDRLRVTLLDRMSTVENGR---SSVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLL 63

Query: 61  DIIKDDVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQ--- 120
           D+++ +        R++ +WK LRD+LRL   +            ++++   PT +    
Sbjct: 64  DVMRRE------RRRDKTAWKSLRDKLRLKRTA----------TGWISSNPIPTLDNHIL 123

Query: 121 SPESTAGVQDLRLISRRNSTSSNQNTPPSSEATNSDHPPATNIYAATVAADEEEEVSTEA 180
           +P++     D    +R     +N  T  SS   +          AA  AA+ E  +    
Sbjct: 124 TPDN-----DSHRFNRLGFLLTNSETNRSSRDVSD---------AAEEAAEREGRLRLGT 183

Query: 181 DTAA---PVRMSLMDLLEETDRQM-GLEAIEEKE-------DVDGEVAAVCGGGTERKCC 240
             AA   P RMSLM+LLE+ D  M  L A +E E       D  GE  AV  G  E  CC
Sbjct: 184 VLAAEREPPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVT-GAAELGCC 243

Query: 241 VCMVRDKGAAFIPCGHTFCRLCSRELWVNRGNCPLCNAHILEILDIF 269
           VCMVR KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  IL++LDIF
Sbjct: 244 VCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 256

[Close]

BLAST of Sed0001222 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 3.2e-33
Identity = 104/280 (37.14%), Postives = 146/280 (52.14%), Query Frame = 0


Query: 1   MESG-RRRITLYDQMLAVGDGRELTGGLTLNDVLSTHKS-SSP---SPSPAVRLNGRTLL 60
           M+ G R R+TL D+M  V   R     LTL  +L   K+ +SP   SP P+   + R+L+
Sbjct: 4   MDGGDRLRVTLLDRMSTVESSRSC---LTLEAILMADKNRTSPQILSPPPSRSQSNRSLV 63

Query: 61  DIIKDDVGKSPAGNRERKSWKFLRDRLRLNPRSHIPPPNSLRFAAFLTAEMSPTEEQSPE 120
           ++++    +    +R++ +WK LR++LRL     +          ++++   P+ +    
Sbjct: 64  EVMQ----REHRHSRDKTAWKSLREKLRLKRNGSV----------WISSNSIPSLDTP-- 123

Query: 121 STAGVQDLRLISRRNSTSSNQN--TPPSSEATNSDHPPATNIYAATVAADEEEEVSTEAD 180
                     I  R++ S         S   T         I    V A+E    + E +
Sbjct: 124 ----------IPNRDNVSHQLGFLLSNSGNVTEEASSVEGRIRLGAVLAEERALSAREEE 183

Query: 181 TAA-----PVRMSLMDLLEETDRQMGLEAIEEKEDVDGEVAAVCGGGTERKCCVCMVRDK 240
           T A     P RMSLM+LLEE + QM   +++   + + EVAAV     E  CCVCMVR K
Sbjct: 184 TPAEREVEPARMSLMELLEENEGQMSFVSVD--GEAEEEVAAVT--AAEISCCVCMVRSK 243

Query: 241 GAAFIPCGHTFCRLCSRELWVNRGNCPLCNAHILEILDIF 269
           GAAFIPCGHTFCRLCSRELWV RGNCPLCN  ILE+LD+F
Sbjct: 244 GAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

The following BLAST results are available for this feature:

BLAST of Sed0001222 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522866.1	2.4e-91	56.79	chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960262.1	7.0e-91	56.63	chromo domain-containing protein cec-1-like [Cucurbita moschata] >KAG7025412.1 h...	[more]
KAA0026218.1	2.0e-90	56.15	nucleolin-like [Cucumis melo var. makuwa] >TYK30738.1 nucleolin-like [Cucumis me...	[more]
XP_023004831.1	2.6e-90	56.35	nucleolin-like [Cucurbita maxima]	[more]
XP_008458019.1	4.5e-90	55.31	PREDICTED: nucleolin-like [Cucumis melo]	[more]

BLAST of Sed0001222 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001222 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6Y3	3.4e-91	56.63	chromo domain-containing protein cec-1-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5D3E4J3	9.8e-91	56.15	Nucleolin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00730...	[more]
A0A6J1KT79	1.3e-90	56.35	nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111498015 PE=4 SV=1	[more]
A0A1S3C6E1	2.2e-90	55.31	nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1	[more]
A0A0A0K6R9	3.2e-81	52.39	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 P...	[more]

BLAST of Sed0001222 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13100.1	7.5e-35	38.38	RING/U-box superfamily protein	[more]
AT4G13100.4	7.5e-35	38.38	RING/U-box superfamily protein	[more]
AT4G13100.3	6.4e-34	38.68	RING/U-box superfamily protein	[more]
AT4G13100.5	6.4e-34	38.68	RING/U-box superfamily protein	[more]
AT3G25030.1	3.2e-33	37.14	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 220..257 e-value: 1.9E-5 score: 34.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 220..258 score: 10.718918
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 217..262 e-value: 3.8E-11 score: 42.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..152
None	No IPR available	PANTHER	PTHR46629:SF13	OS01G0917900 PROTEIN	coord: 3..147 coord: 113..268
None	No IPR available	PANTHER	PTHR46629	OS01G0917900 PROTEIN	coord: 3..147 coord: 113..268
None	No IPR available	CDD	cd16449	RING-HC	coord: 220..257 e-value: 1.17599E-9 score: 50.9289
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 219..265
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 215..267 e-value: 6.3E-12 score: 46.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001222.1	Sed0001222.1	mRNA