Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACACAGGGCGGCGAGAAGACAAAATAAATAAATAATAGAGATTTATTCCGCTAATTTTAGCCCATATAATATTACCAAAGTATTGGTGTATTGATTGTTTTTGGCTTCAATCTTCAAAAACCTCCAAAGCATTTCTCACCGTAATCTTCCCCCAATCTCCAAACAAACACCAAAACAATGGCGGATGGGTACTCCAAAATGAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCATCGCTCCCTCGCTCCCTCTCCAATCCAAACTCTCCCCATTCCGATCACAAAATGACTCGTCCGCCGCGTTTGCCGGAGGAGGAGGAAGAAGAATACAGCAGCGCCGCCACCGCCCCTGCCGCCGCTCTGAAGAGGAACACCTCTGTCTCTTCATCGGCCTCCGGATTCCAATCGGCGGTGAAGAGAGCTATGTCGATGCGGCGATCTTCGTCTGTGGCGGAGCGCTACTGTAGGATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGACGATGATGGAGGGTCTGTGAGGATTTCGAAGAAGAAGAAGAAGAACGCTGCCAGGAAGATCGTTGGCGCTTGTAAGCGATTTTTCGGACTGTAACTTTGGAATTGATGAGAAGTTTTTTTAACTAAATGAATCCGTGAAGTATCTTTTCATCTTTTTTATTTTGTTGCAGAGAGGTGTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
mRNA sequence
AACACAGGGCGGCGAGAAGACAAAATAAATAAATAATAGAGATTTATTCCGCTAATTTTAGCCCATATAATATTACCAAAGTATTGGTGTATTGATTGTTTTTGGCTTCAATCTTCAAAAACCTCCAAAGCATTTCTCACCGTAATCTTCCCCCAATCTCCAAACAAACACCAAAACAATGGCGGATGGGTACTCCAAAATGAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCATCGCTCCCTCGCTCCCTCTCCAATCCAAACTCTCCCCATTCCGATCACAAAATGACTCGTCCGCCGCGTTTGCCGGAGGAGGAGGAAGAAGAATACAGCAGCGCCGCCACCGCCCCTGCCGCCGCTCTGAAGAGGAACACCTCTGTCTCTTCATCGGCCTCCGGATTCCAATCGGCGGTGAAGAGAGCTATGTCGATGCGGCGATCTTCGTCTGTGGCGGAGCGCTACTGTAGGATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGACGATGATGGAGGGTCTGTGAGGATTTCGAAGAAGAAGAAGAAGAACGCTGCCAGGAAGATCGTTGGCGCTTGTAAGCGATTTTTCGGACTGTAACTTTGGAATTGATGAGAAGTTTTTTTAACTAAATGAATCCGTGAAGTATCTTTTCATCTTTTTTATTTTGTTGCAGAGAGGTGTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Coding sequence (CDS)
ATGGCGGATGGGTACTCCAAAATGAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCATCGCTCCCTCGCTCCCTCTCCAATCCAAACTCTCCCCATTCCGATCACAAAATGACTCGTCCGCCGCGTTTGCCGGAGGAGGAGGAAGAAGAATACAGCAGCGCCGCCACCGCCCCTGCCGCCGCTCTGAAGAGGAACACCTCTGTCTCTTCATCGGCCTCCGGATTCCAATCGGCGGTGAAGAGAGCTATGTCGATGCGGCGATCTTCGTCTGTGGCGGAGCGCTACTGTAGGATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGACGATGATGGAGGGTCTGTGAGGATTTCGAAGAAGAAGAAGAAGAACGCTGCCAGGAAGATCGTTGGCGCTTGTAAGCGATTTTTCGGACTGTAA
Protein sequence
MADGYSKMKFKSRSIDYSDLSSLPRSLSNPNSPHSDHKMTRPPRLPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFATLASPIDDDGGSVRISKKKKKNAARKIVGACKRFFGL
Homology
BLAST of Sed0001188 vs. NCBI nr
Match:
KAG7031359.1 (hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 163.3 bits (412), Expect = 1.5e-36
Identity = 111/171 (64.91%), Postives = 118/171 (69.01%), Query Frame = 0
Query: 1 MADGYSKM----KFKSRSIDYSDLSSLPRSL------SNPNSPHSDHKMT----RPPR-- 60
MAD YSK+ K KSRS+DYSDLSSLP SL SNPNS SD T PP
Sbjct: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGC 60
Query: 61 LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQF 120
LPEEEE+EY SAATA A+ L+RN SVS+SASGF SAVKRA+SMRRSSSVAERY RIHDQF
Sbjct: 61 LPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQF 120
Query: 121 ATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
TLASPIDDD GGSVR KKK NAA KIV ACKR FGL
Sbjct: 121 GTLASPIDDDEIEGEESKEGRNAGGSVR---KKKTNAAGKIVRACKRLFGL 168
BLAST of Sed0001188 vs. NCBI nr
Match:
XP_022929198.1 (uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothetical protein SDJN03_24940, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 160.6 bits (405), Expect = 9.9e-36
Identity = 109/176 (61.93%), Postives = 119/176 (67.61%), Query Frame = 0
Query: 1 MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLP 60
MAD YSK+ KFKSRSIDYSDL+SLP S +SNPNS S+ T + RLP
Sbjct: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
Query: 61 EEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRI 120
EEEEE EY +A AAAL RN SVSSS SGF SAVKRA+SMRRSSSVAERYCRI
Sbjct: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
Query: 121 HDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL 143
HDQFATLASPIDDD GGSV + KKKKKN+A KIV ACKR FG+
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176
BLAST of Sed0001188 vs. NCBI nr
Match:
KAG7015455.1 (hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 159.8 bits (403), Expect = 1.7e-35
Identity = 109/176 (61.93%), Postives = 119/176 (67.61%), Query Frame = 0
Query: 1 MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLP 60
MAD YSK+ KFKSRSIDYSDL+SLP S +SNPNS S+ T + RLP
Sbjct: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
Query: 61 EEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRI 120
EEEEE EY +A AAAL RN SVSSS SGF SAVKRA+SMRRSSSVAERYCRI
Sbjct: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
Query: 121 HDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL 143
HDQFATLASPIDDD GGSV + KKKKKN+A KIV ACKR FG+
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 176
BLAST of Sed0001188 vs. NCBI nr
Match:
XP_022136741.1 (uncharacterized protein LOC111008371 [Momordica charantia])
HSP 1 Score: 155.6 bits (392), Expect = 3.2e-34
Identity = 105/171 (61.40%), Postives = 113/171 (66.08%), Query Frame = 0
Query: 1 MADGYSKM----KFKSRSIDYSDLSSLPRSLS------NPNSPHSDHKMTRPPR------ 60
MADGYSK+ KFKSRSIDYSDL+SLP SL NPNS + R R
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLASLPHSLKFTAAVPNPNSLAHESDQNRANRARAQSC 60
Query: 61 LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQF 120
LPEEEE+EY AAL RN+SVSSSASG SAVKRA+SMRRSSSVAERYCRIHDQF
Sbjct: 61 LPEEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAERYCRIHDQF 120
Query: 121 ATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
ATLASPIDD+ GSVR +KKKNAA KIV ACKR FGL
Sbjct: 121 ATLASPIDDEEIGAGDSKESRKSAGSVR---RKKKNAAGKIVRACKRLFGL 168
BLAST of Sed0001188 vs. NCBI nr
Match:
KGN56255.1 (hypothetical protein Csa_011668 [Cucumis sativus])
HSP 1 Score: 155.6 bits (392), Expect = 3.2e-34
Identity = 105/170 (61.76%), Postives = 116/170 (68.24%), Query Frame = 0
Query: 1 MADGYSKM----KFKSRSIDYSDLSSLPRSL---SNPNSPHSDHKMTRPP--RLPEEEEE 60
MADGYSK+ KFKSRSIDYSDLSSLP SL + ++P ++ PP RLPEE+EE
Sbjct: 1 MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE 60
Query: 61 ------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFA 120
+ AT AA L RN+SVSSS SGFQSAVKRA+SMRRSSSVAERYCRIHDQFA
Sbjct: 61 VNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA 120
Query: 121 TLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
T ASPI+DD GGS KKKKKNAA KIV ACKR FGL
Sbjct: 121 TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRACKRIFGL 170
BLAST of Sed0001188 vs. ExPASy TrEMBL
Match:
A0A6J1ERE9 (uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC111435863 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 4.8e-36
Identity = 109/176 (61.93%), Postives = 119/176 (67.61%), Query Frame = 0
Query: 1 MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLP 60
MAD YSK+ KFKSRSIDYSDL+SLP S +SNPNS S+ T + RLP
Sbjct: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
Query: 61 EEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRI 120
EEEEE EY +A AAAL RN SVSSS SGF SAVKRA+SMRRSSSVAERYCRI
Sbjct: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
Query: 121 HDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL 143
HDQFATLASPIDDD GGSV + KKKKKN+A KIV ACKR FG+
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176
BLAST of Sed0001188 vs. ExPASy TrEMBL
Match:
A0A0A0L2N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34
Identity = 105/170 (61.76%), Postives = 116/170 (68.24%), Query Frame = 0
Query: 1 MADGYSKM----KFKSRSIDYSDLSSLPRSL---SNPNSPHSDHKMTRPP--RLPEEEEE 60
MADGYSK+ KFKSRSIDYSDLSSLP SL + ++P ++ PP RLPEE+EE
Sbjct: 1 MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE 60
Query: 61 ------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFA 120
+ AT AA L RN+SVSSS SGFQSAVKRA+SMRRSSSVAERYCRIHDQFA
Sbjct: 61 VNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA 120
Query: 121 TLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
T ASPI+DD GGS KKKKKNAA KIV ACKR FGL
Sbjct: 121 TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRACKRIFGL 170
BLAST of Sed0001188 vs. ExPASy TrEMBL
Match:
A0A6J1C4C9 (uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008371 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34
Identity = 105/171 (61.40%), Postives = 113/171 (66.08%), Query Frame = 0
Query: 1 MADGYSKM----KFKSRSIDYSDLSSLPRSLS------NPNSPHSDHKMTRPPR------ 60
MADGYSK+ KFKSRSIDYSDL+SLP SL NPNS + R R
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLASLPHSLKFTAAVPNPNSLAHESDQNRANRARAQSC 60
Query: 61 LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQF 120
LPEEEE+EY AAL RN+SVSSSASG SAVKRA+SMRRSSSVAERYCRIHDQF
Sbjct: 61 LPEEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAERYCRIHDQF 120
Query: 121 ATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
ATLASPIDD+ GSVR +KKKNAA KIV ACKR FGL
Sbjct: 121 ATLASPIDDEEIGAGDSKESRKSAGSVR---RKKKNAAGKIVRACKRLFGL 168
BLAST of Sed0001188 vs. ExPASy TrEMBL
Match:
A0A5A7V402 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00790 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 5.5e-32
Identity = 104/172 (60.47%), Postives = 111/172 (64.53%), Query Frame = 0
Query: 1 MADGYSKM----KFKSRSIDYSDLSSLPRSL-------SNPNSPHSDHKMTRPP------ 60
MADGYSK+ KFKSRSIDYSDLSSLP SL SNP S HS+H T P
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLSSLPHSLTFNNAAVSNPISHHSNHSRTNRPQEPPHR 60
Query: 61 RLPEEEEEEYSSAATAP-----AAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYC 120
RLPEE+EE P AA L RN+SVSSS SGFQSAVKRA+SMRRSSSVAERYC
Sbjct: 61 RLPEEDEEVNDDECDRPRGGTAAATLSRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYC 120
Query: 121 RIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACK 138
RIHDQFAT ASPI+DD GGS I KKKK NAA KIV A +
Sbjct: 121 RIHDQFATFASPIEDDELEGGDSKERGKLGGSA-IKKKKKTNAAGKIVRALR 171
BLAST of Sed0001188 vs. ExPASy TrEMBL
Match:
A0A2N9II75 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41345 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 4.5e-18
Identity = 73/157 (46.50%), Postives = 92/157 (58.60%), Query Frame = 0
Query: 3 DGYSKMKF----KSRSIDYSDLSSLPRSLSNPNSPH-SDHK--------MTRPPRLPEEE 62
+GY+K++ KS+S+D+SD S P N NS H S H+ T+ + E
Sbjct: 2 NGYAKIRIINTRKSKSVDFSDASLFP--TKNTNSDHTSKHQETNQIKDTNTKKTKTQESL 61
Query: 63 EEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFATLAS 122
E+E + + + R+ SVSSS SGFQSA+KRA S+RRSSSV+ERYCRIHDQ TL S
Sbjct: 62 EDEDGNGESFGMVLMSRSLSVSSSTSGFQSAMKRAFSLRRSSSVSERYCRIHDQSVTLTS 121
Query: 123 PIDDDG-----GSVRISKKKKKNAARKIVGACKRFFG 142
PIDDD R S KK K KI+ ACKR FG
Sbjct: 122 PIDDDEVGDTMSGTRRSVKKSKYKGGKILKACKRLFG 156
BLAST of Sed0001188 vs. TAIR 10
Match:
AT4G24275.1 (Identified as a screen for stress-responsive genes. )
HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 54/136 (39.71%), Postives = 73/136 (53.68%), Query Frame = 0
Query: 17 YSDLSSLPRSLSNPNSPHSDHKMTRPPRLPEEEEEEYSSAATAPAAALKRNTSVSSSASG 76
YS + S + L P+ P D ++ +P P E + + L RN SVS+SA
Sbjct: 4 YSKMDSTDQKL-EPDHPVVDPQIQKPDLEPAEMKPK-----------LSRNRSVSASAQA 63
Query: 77 FQSAVKRAMSMRRSSSVAERYCRIHDQFATLASPI--------DDDGGSVRISKKKKKNA 136
S +K MSMRRSSSV+ERYCRI+DQ + P+ +DD ++ KKKK N
Sbjct: 64 VPSPIK--MSMRRSSSVSERYCRIYDQSSATTWPLPFHEGDEDEDDDDKEKVHKKKKSNN 123
Query: 137 ARK--IVGACKRFFGL 143
+K V ACKRFFG+
Sbjct: 124 FKKKAFVKACKRFFGI 125
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7031359.1 | 1.5e-36 | 64.91 | hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022929198.1 | 9.9e-36 | 61.93 | uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothet... | [more] |
KAG7015455.1 | 1.7e-35 | 61.93 | hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022136741.1 | 3.2e-34 | 61.40 | uncharacterized protein LOC111008371 [Momordica charantia] | [more] |
KGN56255.1 | 3.2e-34 | 61.76 | hypothetical protein Csa_011668 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1ERE9 | 4.8e-36 | 61.93 | uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC1114358... | [more] |
A0A0A0L2N9 | 1.5e-34 | 61.76 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1 | [more] |
A0A6J1C4C9 | 1.5e-34 | 61.40 | uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008... | [more] |
A0A5A7V402 | 5.5e-32 | 60.47 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A2N9II75 | 4.5e-18 | 46.50 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41345 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT4G24275.1 | 1.1e-11 | 39.71 | Identified as a screen for stress-responsive genes. | [more] |