Sed0001188 (gene) Chayote v1

Overview
NameSed0001188
Typegene
OrganismSechium edule (Chayote v1)
DescriptionIdentified as a screen for stress-responsive genes.
LocationLG07: 21903059 .. 21903799 (+)
RNA-Seq ExpressionSed0001188
SyntenySed0001188
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACACAGGGCGGCGAGAAGACAAAATAAATAAATAATAGAGATTTATTCCGCTAATTTTAGCCCATATAATATTACCAAAGTATTGGTGTATTGATTGTTTTTGGCTTCAATCTTCAAAAACCTCCAAAGCATTTCTCACCGTAATCTTCCCCCAATCTCCAAACAAACACCAAAACAATGGCGGATGGGTACTCCAAAATGAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCATCGCTCCCTCGCTCCCTCTCCAATCCAAACTCTCCCCATTCCGATCACAAAATGACTCGTCCGCCGCGTTTGCCGGAGGAGGAGGAAGAAGAATACAGCAGCGCCGCCACCGCCCCTGCCGCCGCTCTGAAGAGGAACACCTCTGTCTCTTCATCGGCCTCCGGATTCCAATCGGCGGTGAAGAGAGCTATGTCGATGCGGCGATCTTCGTCTGTGGCGGAGCGCTACTGTAGGATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGACGATGATGGAGGGTCTGTGAGGATTTCGAAGAAGAAGAAGAAGAACGCTGCCAGGAAGATCGTTGGCGCTTGTAAGCGATTTTTCGGACTGTAACTTTGGAATTGATGAGAAGTTTTTTTAACTAAATGAATCCGTGAAGTATCTTTTCATCTTTTTTATTTTGTTGCAGAGAGGTGTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

mRNA sequence

AACACAGGGCGGCGAGAAGACAAAATAAATAAATAATAGAGATTTATTCCGCTAATTTTAGCCCATATAATATTACCAAAGTATTGGTGTATTGATTGTTTTTGGCTTCAATCTTCAAAAACCTCCAAAGCATTTCTCACCGTAATCTTCCCCCAATCTCCAAACAAACACCAAAACAATGGCGGATGGGTACTCCAAAATGAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCATCGCTCCCTCGCTCCCTCTCCAATCCAAACTCTCCCCATTCCGATCACAAAATGACTCGTCCGCCGCGTTTGCCGGAGGAGGAGGAAGAAGAATACAGCAGCGCCGCCACCGCCCCTGCCGCCGCTCTGAAGAGGAACACCTCTGTCTCTTCATCGGCCTCCGGATTCCAATCGGCGGTGAAGAGAGCTATGTCGATGCGGCGATCTTCGTCTGTGGCGGAGCGCTACTGTAGGATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGACGATGATGGAGGGTCTGTGAGGATTTCGAAGAAGAAGAAGAAGAACGCTGCCAGGAAGATCGTTGGCGCTTGTAAGCGATTTTTCGGACTGTAACTTTGGAATTGATGAGAAGTTTTTTTAACTAAATGAATCCGTGAAGTATCTTTTCATCTTTTTTATTTTGTTGCAGAGAGGTGTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

Coding sequence (CDS)

ATGGCGGATGGGTACTCCAAAATGAAATTCAAATCAAGATCCATCGATTACTCCGATCTCTCATCGCTCCCTCGCTCCCTCTCCAATCCAAACTCTCCCCATTCCGATCACAAAATGACTCGTCCGCCGCGTTTGCCGGAGGAGGAGGAAGAAGAATACAGCAGCGCCGCCACCGCCCCTGCCGCCGCTCTGAAGAGGAACACCTCTGTCTCTTCATCGGCCTCCGGATTCCAATCGGCGGTGAAGAGAGCTATGTCGATGCGGCGATCTTCGTCTGTGGCGGAGCGCTACTGTAGGATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGACGATGATGGAGGGTCTGTGAGGATTTCGAAGAAGAAGAAGAAGAACGCTGCCAGGAAGATCGTTGGCGCTTGTAAGCGATTTTTCGGACTGTAA

Protein sequence

MADGYSKMKFKSRSIDYSDLSSLPRSLSNPNSPHSDHKMTRPPRLPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFATLASPIDDDGGSVRISKKKKKNAARKIVGACKRFFGL
Homology
BLAST of Sed0001188 vs. NCBI nr
Match: KAG7031359.1 (hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-36
Identity = 111/171 (64.91%), Postives = 118/171 (69.01%), Query Frame = 0

Query: 1   MADGYSKM----KFKSRSIDYSDLSSLPRSL------SNPNSPHSDHKMT----RPPR-- 60
           MAD YSK+    K KSRS+DYSDLSSLP SL      SNPNS  SD   T     PP   
Sbjct: 1   MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRFAAADSNPNSRDSDQNRTNRSREPPHGC 60

Query: 61  LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQF 120
           LPEEEE+EY SAATA A+ L+RN SVS+SASGF SAVKRA+SMRRSSSVAERY RIHDQF
Sbjct: 61  LPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQF 120

Query: 121 ATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
            TLASPIDDD             GGSVR   KKK NAA KIV ACKR FGL
Sbjct: 121 GTLASPIDDDEIEGEESKEGRNAGGSVR---KKKTNAAGKIVRACKRLFGL 168

BLAST of Sed0001188 vs. NCBI nr
Match: XP_022929198.1 (uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothetical protein SDJN03_24940, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.6 bits (405), Expect = 9.9e-36
Identity = 109/176 (61.93%), Postives = 119/176 (67.61%), Query Frame = 0

Query: 1   MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLP 60
           MAD YSK+    KFKSRSIDYSDL+SLP S        +SNPNS  S+   T  +  RLP
Sbjct: 1   MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60

Query: 61  EEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRI 120
           EEEEE      EY    +A AAAL RN SVSSS SGF SAVKRA+SMRRSSSVAERYCRI
Sbjct: 61  EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120

Query: 121 HDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL 143
           HDQFATLASPIDDD             GGSV +  KKKKKN+A KIV ACKR FG+
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176

BLAST of Sed0001188 vs. NCBI nr
Match: KAG7015455.1 (hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-35
Identity = 109/176 (61.93%), Postives = 119/176 (67.61%), Query Frame = 0

Query: 1   MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLP 60
           MAD YSK+    KFKSRSIDYSDL+SLP S        +SNPNS  S+   T  +  RLP
Sbjct: 1   MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60

Query: 61  EEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRI 120
           EEEEE      EY    +A AAAL RN SVSSS SGF SAVKRA+SMRRSSSVAERYCRI
Sbjct: 61  EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120

Query: 121 HDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL 143
           HDQFATLASPIDDD             GGSV +  KKKKKN+A KIV ACKR FG+
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 176

BLAST of Sed0001188 vs. NCBI nr
Match: XP_022136741.1 (uncharacterized protein LOC111008371 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 3.2e-34
Identity = 105/171 (61.40%), Postives = 113/171 (66.08%), Query Frame = 0

Query: 1   MADGYSKM----KFKSRSIDYSDLSSLPRSLS------NPNSPHSDHKMTRPPR------ 60
           MADGYSK+    KFKSRSIDYSDL+SLP SL       NPNS   +    R  R      
Sbjct: 1   MADGYSKIKAACKFKSRSIDYSDLASLPHSLKFTAAVPNPNSLAHESDQNRANRARAQSC 60

Query: 61  LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQF 120
           LPEEEE+EY        AAL RN+SVSSSASG  SAVKRA+SMRRSSSVAERYCRIHDQF
Sbjct: 61  LPEEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAERYCRIHDQF 120

Query: 121 ATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
           ATLASPIDD+              GSVR   +KKKNAA KIV ACKR FGL
Sbjct: 121 ATLASPIDDEEIGAGDSKESRKSAGSVR---RKKKNAAGKIVRACKRLFGL 168

BLAST of Sed0001188 vs. NCBI nr
Match: KGN56255.1 (hypothetical protein Csa_011668 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.2e-34
Identity = 105/170 (61.76%), Postives = 116/170 (68.24%), Query Frame = 0

Query: 1   MADGYSKM----KFKSRSIDYSDLSSLPRSL---SNPNSPHSDHKMTRPP--RLPEEEEE 60
           MADGYSK+    KFKSRSIDYSDLSSLP SL   +  ++P   ++   PP  RLPEE+EE
Sbjct: 1   MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE 60

Query: 61  ------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFA 120
                 +    AT  AA L RN+SVSSS SGFQSAVKRA+SMRRSSSVAERYCRIHDQFA
Sbjct: 61  VNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA 120

Query: 121 TLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
           T ASPI+DD             GGS    KKKKKNAA KIV ACKR FGL
Sbjct: 121 TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRACKRIFGL 170

BLAST of Sed0001188 vs. ExPASy TrEMBL
Match: A0A6J1ERE9 (uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC111435863 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.8e-36
Identity = 109/176 (61.93%), Postives = 119/176 (67.61%), Query Frame = 0

Query: 1   MADGYSKM----KFKSRSIDYSDLSSLPRS--------LSNPNSPHSDHKMT--RPPRLP 60
           MAD YSK+    KFKSRSIDYSDL+SLP S        +SNPNS  S+   T  +  RLP
Sbjct: 1   MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60

Query: 61  EEEEE------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRI 120
           EEEEE      EY    +A AAAL RN SVSSS SGF SAVKRA+SMRRSSSVAERYCRI
Sbjct: 61  EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120

Query: 121 HDQFATLASPIDDD-------------GGSV-RISKKKKKNAARKIVGACKRFFGL 143
           HDQFATLASPIDDD             GGSV +  KKKKKN+A KIV ACKR FG+
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176

BLAST of Sed0001188 vs. ExPASy TrEMBL
Match: A0A0A0L2N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34
Identity = 105/170 (61.76%), Postives = 116/170 (68.24%), Query Frame = 0

Query: 1   MADGYSKM----KFKSRSIDYSDLSSLPRSL---SNPNSPHSDHKMTRPP--RLPEEEEE 60
           MADGYSK+    KFKSRSIDYSDLSSLP SL   +  ++P   ++   PP  RLPEE+EE
Sbjct: 1   MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTFSAAVSNPTRTNRPQEPPHGRLPEEDEE 60

Query: 61  ------EYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFA 120
                 +    AT  AA L RN+SVSSS SGFQSAVKRA+SMRRSSSVAERYCRIHDQFA
Sbjct: 61  VNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRIHDQFA 120

Query: 121 TLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
           T ASPI+DD             GGS    KKKKKNAA KIV ACKR FGL
Sbjct: 121 TFASPIEDDEMEGGDWKERGKIGGSEIRKKKKKKNAAEKIVRACKRIFGL 170

BLAST of Sed0001188 vs. ExPASy TrEMBL
Match: A0A6J1C4C9 (uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008371 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34
Identity = 105/171 (61.40%), Postives = 113/171 (66.08%), Query Frame = 0

Query: 1   MADGYSKM----KFKSRSIDYSDLSSLPRSLS------NPNSPHSDHKMTRPPR------ 60
           MADGYSK+    KFKSRSIDYSDL+SLP SL       NPNS   +    R  R      
Sbjct: 1   MADGYSKIKAACKFKSRSIDYSDLASLPHSLKFTAAVPNPNSLAHESDQNRANRARAQSC 60

Query: 61  LPEEEEEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQF 120
           LPEEEE+EY        AAL RN+SVSSSASG  SAVKRA+SMRRSSSVAERYCRIHDQF
Sbjct: 61  LPEEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAERYCRIHDQF 120

Query: 121 ATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACKRFFGL 143
           ATLASPIDD+              GSVR   +KKKNAA KIV ACKR FGL
Sbjct: 121 ATLASPIDDEEIGAGDSKESRKSAGSVR---RKKKNAAGKIVRACKRLFGL 168

BLAST of Sed0001188 vs. ExPASy TrEMBL
Match: A0A5A7V402 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00790 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.5e-32
Identity = 104/172 (60.47%), Postives = 111/172 (64.53%), Query Frame = 0

Query: 1   MADGYSKM----KFKSRSIDYSDLSSLPRSL-------SNPNSPHSDHKMTRPP------ 60
           MADGYSK+    KFKSRSIDYSDLSSLP SL       SNP S HS+H  T  P      
Sbjct: 1   MADGYSKIKAACKFKSRSIDYSDLSSLPHSLTFNNAAVSNPISHHSNHSRTNRPQEPPHR 60

Query: 61  RLPEEEEEEYSSAATAP-----AAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYC 120
           RLPEE+EE        P     AA L RN+SVSSS SGFQSAVKRA+SMRRSSSVAERYC
Sbjct: 61  RLPEEDEEVNDDECDRPRGGTAAATLSRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYC 120

Query: 121 RIHDQFATLASPIDDD-------------GGSVRISKKKKKNAARKIVGACK 138
           RIHDQFAT ASPI+DD             GGS  I KKKK NAA KIV A +
Sbjct: 121 RIHDQFATFASPIEDDELEGGDSKERGKLGGSA-IKKKKKTNAAGKIVRALR 171

BLAST of Sed0001188 vs. ExPASy TrEMBL
Match: A0A2N9II75 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41345 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.5e-18
Identity = 73/157 (46.50%), Postives = 92/157 (58.60%), Query Frame = 0

Query: 3   DGYSKMKF----KSRSIDYSDLSSLPRSLSNPNSPH-SDHK--------MTRPPRLPEEE 62
           +GY+K++     KS+S+D+SD S  P    N NS H S H+         T+  +  E  
Sbjct: 2   NGYAKIRIINTRKSKSVDFSDASLFP--TKNTNSDHTSKHQETNQIKDTNTKKTKTQESL 61

Query: 63  EEEYSSAATAPAAALKRNTSVSSSASGFQSAVKRAMSMRRSSSVAERYCRIHDQFATLAS 122
           E+E  +  +     + R+ SVSSS SGFQSA+KRA S+RRSSSV+ERYCRIHDQ  TL S
Sbjct: 62  EDEDGNGESFGMVLMSRSLSVSSSTSGFQSAMKRAFSLRRSSSVSERYCRIHDQSVTLTS 121

Query: 123 PIDDDG-----GSVRISKKKKKNAARKIVGACKRFFG 142
           PIDDD         R S KK K    KI+ ACKR FG
Sbjct: 122 PIDDDEVGDTMSGTRRSVKKSKYKGGKILKACKRLFG 156

BLAST of Sed0001188 vs. TAIR 10
Match: AT4G24275.1 (Identified as a screen for stress-responsive genes. )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 54/136 (39.71%), Postives = 73/136 (53.68%), Query Frame = 0

Query: 17  YSDLSSLPRSLSNPNSPHSDHKMTRPPRLPEEEEEEYSSAATAPAAALKRNTSVSSSASG 76
           YS + S  + L  P+ P  D ++ +P   P E + +           L RN SVS+SA  
Sbjct: 4   YSKMDSTDQKL-EPDHPVVDPQIQKPDLEPAEMKPK-----------LSRNRSVSASAQA 63

Query: 77  FQSAVKRAMSMRRSSSVAERYCRIHDQFATLASPI--------DDDGGSVRISKKKKKNA 136
             S +K  MSMRRSSSV+ERYCRI+DQ +    P+        +DD    ++ KKKK N 
Sbjct: 64  VPSPIK--MSMRRSSSVSERYCRIYDQSSATTWPLPFHEGDEDEDDDDKEKVHKKKKSNN 123

Query: 137 ARK--IVGACKRFFGL 143
            +K   V ACKRFFG+
Sbjct: 124 FKKKAFVKACKRFFGI 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7031359.11.5e-3664.91hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022929198.19.9e-3661.93uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothet... [more]
KAG7015455.11.7e-3561.93hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022136741.13.2e-3461.40uncharacterized protein LOC111008371 [Momordica charantia][more]
KGN56255.13.2e-3461.76hypothetical protein Csa_011668 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ERE94.8e-3661.93uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC1114358... [more]
A0A0A0L2N91.5e-3461.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1[more]
A0A6J1C4C91.5e-3461.40uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A5A7V4025.5e-3260.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9II754.5e-1846.50Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41345 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24275.11.1e-1139.71Identified as a screen for stress-responsive genes. [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..36
NoneNo IPR availablePANTHERPTHR38386:SF6OS05G0426900 PROTEINcoord: 3..142
NoneNo IPR availablePANTHERPTHR38386OS05G0426900 PROTEINcoord: 3..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001188.1Sed0001188.1mRNA