Sed0001101 (gene) Chayote v1

Overview


Name	Sed0001101
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S23
Location	LG02: 45185023 .. 45187331 (-)
RNA-Seq Expression	Sed0001101
Synteny	Sed0001101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGCAGCTCATCTCAACCTCAGAAATCTTAAGACCCGGTTCCCTCTACAAGCATGGGGTAAGATTGTTCACCATTTTTCTAATTTACCTCTAAGTTAATTGTGTTCTTGGTGTTTTTATTTGCTATGAACAGATTTCTAATACTGATTTTTCTTCCAATGAGTTAGATTTTTTTTTTCTTTATAGATATTTTAACTTATGGTTCTATGATGATTAGGTTTTCTGATCTTAATGTGAATGTAATTATCGGTTTGAGTTTGCAATTAGAGGTAGGTTTTTCTTGTACTGCCTAAGGATTTGGATGAGTGAACATCTTCTAGGAATTACGTACTGATGATGTGGGAAATTTCAAGACTGTGGTTCTGTACCTGGGTTTGATTGATTGATAATATCCTGGTGACATTATTCAACTGAAATACACGCAGATTTTCTCTCTTTAGTTTAAATGGAATTCTTGTTTGAGTTTGCTTATTTGATTTGCAATTATATGTAAGTTTTTCTTGTGATGCCTGATAATTTGGATGTGTGAACAATTGTTAAGTTGGGTGAGTGAAAACCATGTAGGAATTGTGTACTGATGACTTTGTATAACTCAATATCATGTTGCGGTTTTGTACCTGGTTTTGGTTGATTGATTTTTATTCTGGATGACCTTATCCACAGAAAGACACGTGGATTAGGAGCCGGGCGTAAGTTGAAATCCCACCGTAGAAGGCAAAGGTGGGCTGATAAATCCTACAAGAAATCTCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGGTCTTCTCATGCGAAAGGCATCGTGTTGGAAAAGATGTAAGATATGAATCATAATGTTTTCTCCTTCAGATATTTGCTTTGGGTTTTTCTTTCTTGATAGTTGATAGATATTTTATTTTATGCTATGCTTAGCATTGCTTTTCATTTTATTTCCTATTGTTCTGTCTCATTCGATACATTGGTTTGCAATGGGTGATTTTACTGTAGTTTTTGAGAATCCGAAAAGTGAGGAGTACTTCTAACATTTTTATGATAGATAAATTACTATATTCATCGCCAATTGGTTTTGAAATAAAATTTTATGCTAAGTAATATGGAATCAATCTCATTAGACCTAAGTAATACAACGAGATATGGGATACTAGGTTGGTTTTATTGTTTGGTTTAATTGAATGATTTTAGCTTTGGTAACTTCAGTCTTTATCAAGATGTAGAATGTAGTCACCCAATTGAGAATCCCACCTTGGTAAAGTGAGGAGTACTTCGAACATTTTTATGATAGATAAATTACTATATTCATCGCCAATTGGTTTTGAAATAAAATTGTATGCTATCTAATATGGAATCGATACTCATTAGACCCAACAAATACAACCAGATATGGGATACTAGGTTGGCTTTATTGTTGGGTTTAATCGAATGATTTTAGCTTTGGTAACTTCAGTCTTTATCAAGATGTTGAATGTAGTCACCCAATTGATTATCATCACTTTGAATTGAAGATTAATTTGTTCATATATTTTTTAATTGTTGTGTAAACTTATTGAATTTTGTATATAATCTTGAACTTTGTTTTTCTGTGTTCAAATGGTTGGTATCTAAAGGAGTAATGCTAATTTGATTTCAGAGGTATTGAGGCTAAGCAGCCGAATTCTGCCATTAGGAAATGTGCCAGGGTCCAACTTATCAAAAATGGAAAGAAGATTGCTGCATTTGTACCTAACGATGGGTGCTTAAACTATATCGAGGAAAATGTAAGTCTTATCTCCTGTTGCCCCATCCCAATAATGTAACGACTCAATGAGATACTTAGAGTTTTGATCTGATATGAAAACTGCGAGTGCAGGATGAAGTGTTGATTGCTGGATTCGGTCGTAAAGGGCATGCCGTCGGAGATATTCCCGGTGTTCGATTCAAGGTCGTGAAGGTCTCCGGTGTCTCTCTCCTTGCCCTTTTCAAGGAGAAGAAGGAAAAGCCAAGGTCTTAAGTTTATTTGGCAGAGCTTGTTATCTTATATTTTTTTATCAGATAAAATAGAGTACTTTCAGATCTATTGGTGTTTGGACCATTCTGTAGTTCTTGCCCTCTTTTTGCTGTCTGATTTTTTAGGCTTGACATTTTTTAATCCCAACCATTTTGCCTAAAAACTTTTGCTGTTTCAAGCAGCTTTGCAGGTTCTGATTGAAATCTTTCTGCATTTTCTATTCATGTGTGGTAGCATTATTTTTAGATTAGGGTTGCGTACATGTTACCAAATTCTAAATTCTGAAGGAAAAAAATATACTTTCTTAATATTTAGGTTTTTG

mRNA sequence

GGTGCAGCTCATCTCAACCTCAGAAATCTTAAGACCCGGTTCCCTCTACAAGCATGGGAAAGACACGTGGATTAGGAGCCGGGCGTAAGTTGAAATCCCACCGTAGAAGGCAAAGGTGGGCTGATAAATCCTACAAGAAATCTCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGGTCTTCTCATGCGAAAGGCATCGTGTTGGAAAAGATAGGTATTGAGGCTAAGCAGCCGAATTCTGCCATTAGGAAATGTGCCAGGGTCCAACTTATCAAAAATGGAAAGAAGATTGCTGCATTTGTACCTAACGATGGGTGCTTAAACTATATCGAGGAAAATGATGAAGTGTTGATTGCTGGATTCGGTCGTAAAGGGCATGCCGTCGGAGATATTCCCGGTGTTCGATTCAAGGTCGTGAAGGTCTCCGGTGTCTCTCTCCTTGCCCTTTTCAAGGAGAAGAAGGAAAAGCCAAGGTCTTAAGTTTATTTGGCAGAGCTTGTTATCTTATATTTTTTTATCAGATAAAATAGAGTACTTTCAGATCTATTGGTGTTTGGACCATTCTGTAGTTCTTGCCCTCTTTTTGCTGTCTGATTTTTTAGGCTTGACATTTTTTAATCCCAACCATTTTGCCTAAAAACTTTTGCTGTTTCAAGCAGCTTTGCAGGTTCTGATTGAAATCTTTCTGCATTTTCTATTCATGTGTGGTAGCATTATTTTTAGATTAGGGTTGCGTACATGTTACCAAATTCTAAATTCTGAAGGAAAAAAATATACTTTCTTAATATTTAGGTTTTTG

Coding sequence (CDS)

ATGGGAAAGACACGTGGATTAGGAGCCGGGCGTAAGTTGAAATCCCACCGTAGAAGGCAAAGGTGGGCTGATAAATCCTACAAGAAATCTCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGGTCTTCTCATGCGAAAGGCATCGTGTTGGAAAAGATAGGTATTGAGGCTAAGCAGCCGAATTCTGCCATTAGGAAATGTGCCAGGGTCCAACTTATCAAAAATGGAAAGAAGATTGCTGCATTTGTACCTAACGATGGGTGCTTAAACTATATCGAGGAAAATGATGAAGTGTTGATTGCTGGATTCGGTCGTAAAGGGCATGCCGTCGGAGATATTCCCGGTGTTCGATTCAAGGTCGTGAAGGTCTCCGGTGTCTCTCTCCTTGCCCTTTTCAAGGAGAAGAAGGAAAAGCCAAGGTCTTAA

Protein sequence

MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Homology

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BLAST of Sed0001101 vs. NCBI nr
Match: KAG6580588.1 (40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 416 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 475

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 476 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 535

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 536 VVKVSGVSLLALFKEKKEKPRS 557

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BLAST of Sed0001101 vs. NCBI nr
Match: NP_001274976.1 (40S ribosomal protein S23-like [Solanum tuberosum] >NP_001353813.1 40S ribosomal protein S23 [Solanum lycopersicum] >XP_004246693.1 40S ribosomal protein S23 [Solanum lycopersicum] >XP_004249676.1 40S ribosomal protein S23 [Solanum lycopersicum] >XP_006339059.1 PREDICTED: 40S ribosomal protein S23 [Solanum tuberosum] >XP_006361778.1 PREDICTED: 40S ribosomal protein S23 [Solanum tuberosum] >XP_006363678.1 PREDICTED: 40S ribosomal protein S23 [Solanum tuberosum] >XP_006424658.1 40S ribosomal protein S23 [Citrus clementina] >XP_006488186.1 40S ribosomal protein S23 [Citrus sinensis] >XP_009590383.1 40S ribosomal protein S23 [Nicotiana tomentosiformis] >XP_009608287.1 40S ribosomal protein S23 [Nicotiana tomentosiformis] >XP_009609409.1 40S ribosomal protein S23 [Nicotiana tomentosiformis] >XP_009622195.1 40S ribosomal protein S23 [Nicotiana tomentosiformis] >XP_009764738.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana sylvestris] >XP_009772658.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana sylvestris] >XP_009782068.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana sylvestris] >XP_009797647.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana sylvestris] >XP_010037913.1 40S ribosomal protein S23 [Eucalyptus grandis] >XP_010037934.1 40S ribosomal protein S23 [Eucalyptus grandis] >XP_012831938.1 PREDICTED: 40S ribosomal protein S23 [Erythranthe guttata] >XP_012835991.1 PREDICTED: 40S ribosomal protein S23 [Erythranthe guttata] >XP_012846480.1 PREDICTED: 40S ribosomal protein S23 [Erythranthe guttata] >XP_015088332.1 40S ribosomal protein S23 [Solanum pennellii] >XP_015088922.1 40S ribosomal protein S23 [Solanum pennellii] >XP_015089074.1 40S ribosomal protein S23 [Solanum pennellii] >XP_016493532.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana tabacum] >XP_016493534.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana tabacum] >XP_016494627.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana tabacum] >XP_016497343.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana tabacum] >XP_016498165.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana tabacum] >XP_016514411.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana tabacum] >XP_016514412.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana tabacum] >XP_016514413.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana tabacum] >XP_016542663.1 PREDICTED: 40S ribosomal protein S23 [Capsicum annuum] >XP_016543093.1 PREDICTED: 40S ribosomal protein S23 [Capsicum annuum] >XP_016543352.1 PREDICTED: 40S ribosomal protein S23 [Capsicum annuum] >XP_016575790.1 PREDICTED: 40S ribosomal protein S23 [Capsicum annuum] >XP_017244893.1 PREDICTED: 40S ribosomal protein S23 [Daucus carota subsp. sativus] >XP_017249842.1 PREDICTED: 40S ribosomal protein S23 [Daucus carota subsp. sativus] >XP_017255089.1 PREDICTED: 40S ribosomal protein S23 [Daucus carota subsp. sativus] >XP_018824484.1 40S ribosomal protein S23 [Juglans regia] >XP_018832209.1 40S ribosomal protein S23 [Juglans regia] >XP_018836480.1 40S ribosomal protein S23 [Juglans regia] >XP_018858681.1 40S ribosomal protein S23 [Juglans regia] >XP_019250627.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana attenuata] >XP_019251932.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana attenuata] >XP_019254735.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana attenuata] >XP_019263599.1 PREDICTED: 40S ribosomal protein S23 [Nicotiana attenuata] >XP_022934540.1 40S ribosomal protein S23 [Cucurbita moschata] >XP_022938922.1 40S ribosomal protein S23 isoform X3 [Cucurbita moschata] >XP_022964620.1 40S ribosomal protein S23 [Cucurbita moschata] >XP_022983628.1 40S ribosomal protein S23 [Cucurbita maxima] >XP_022993740.1 40S ribosomal protein S23 isoform X2 [Cucurbita maxima] >XP_023000107.1 40S ribosomal protein S23 [Cucurbita maxima] >XP_023513535.1 40S ribosomal protein S23 [Cucurbita pepo subsp. pepo] >XP_023526296.1 40S ribosomal protein S23 [Cucurbita pepo subsp. pepo] >XP_023549583.1 40S ribosomal protein S23 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023884035.1 40S ribosomal protein S23 [Quercus suber] >XP_023916808.1 40S ribosomal protein S23 [Quercus suber] >XP_023929789.1 40S ribosomal protein S23 [Quercus suber] >XP_023929790.1 40S ribosomal protein S23 [Quercus suber] >XP_026403113.1 40S ribosomal protein S23 [Papaver somniferum] >XP_026415505.1 40S ribosomal protein S23 [Papaver somniferum] >XP_026415705.1 40S ribosomal protein S23 [Papaver somniferum] >XP_026418400.1 40S ribosomal protein S23 isoform X2 [Papaver somniferum] >XP_026424065.1 40S ribosomal protein S23 isoform X2 [Papaver somniferum] >XP_026427043.1 40S ribosomal protein S23 [Papaver somniferum] >XP_027072725.1 40S ribosomal protein S23 [Coffea arabica] >XP_027174826.1 40S ribosomal protein S23 [Coffea eugenioides] >XP_028127220.1 40S ribosomal protein S23 [Camellia sinensis] >XP_030451862.1 40S ribosomal protein S23 isoform X1 [Syzygium oleosum] >XP_030451863.1 40S ribosomal protein S23 isoform X2 [Syzygium oleosum] >XP_030451864.1 40S ribosomal protein S23 isoform X3 [Syzygium oleosum] >XP_030542511.1 40S ribosomal protein S23 [Rhodamnia argentea] >XP_030542575.1 40S ribosomal protein S23 isoform X1 [Rhodamnia argentea] >XP_030924309.1 40S ribosomal protein S23 [Quercus lobata] >XP_030932903.1 40S ribosomal protein S23 [Quercus lobata] >XP_030968455.1 40S ribosomal protein S23 [Quercus lobata] >XP_033516574.1 40S ribosomal protein S23 [Nicotiana tomentosiformis] >XP_040997658.1 40S ribosomal protein S23 [Juglans microcarpa x Juglans regia] >XP_041000357.1 40S ribosomal protein S23 [Juglans microcarpa x Juglans regia] >XP_041023793.1 40S ribosomal protein S23 [Juglans microcarpa x Juglans regia] >XP_041026703.1 40S ribosomal protein S23 [Juglans microcarpa x Juglans regia] >XP_042504046.1 40S ribosomal protein S23 [Macadamia integrifolia] >XP_042510378.1 40S ribosomal protein S23 [Macadamia integrifolia] >XP_042944414.1 40S ribosomal protein S23 [Carya illinoinensis] >XP_042961574.1 40S ribosomal protein S23 [Carya illinoinensis] >XP_042968539.1 40S ribosomal protein S23 [Carya illinoinensis] >KAB1218040.1 40S ribosomal protein S23 [Morella rubra] >KAB1768346.1 30S ribosomal protein S12 [Klebsiella pneumoniae] >KAF3958987.1 hypothetical protein CMV_016156 [Castanea mollissima] >KAF5186570.1 30S ribosomal protein S12 [Thalictrum thalictroides] >KAF8006181.1 hypothetical protein BT93_K0478 [Corymbia citriodora subsp. variegata] >KAF8397633.1 hypothetical protein HHK36_016553 [Tetracentron sinense] >KAF9587708.1 hypothetical protein IFM89_004685 [Coptis chinensis] >KAG5582585.1 hypothetical protein H5410_053212 [Solanum commersonii] >KAG6593526.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016271.1 40S ribosomal protein S23 [Cucurbita argyrosperma subsp. argyrosperma] >PIA25888.1 hypothetical protein AQUCO_10500021v1 [Aquilegia coerulea] >GAY38272.1 hypothetical protein CUMW_035420 [Citrus unshiu])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. NCBI nr
Match: KAF3946178.1 (hypothetical protein CMV_027526, partial [Castanea mollissima])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 24  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 83

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 84  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 143

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 144 VVKVSGVSLLALFKEKKEKPRS 165

[Close]

BLAST of Sed0001101 vs. NCBI nr
Match: PIA25887.1 (hypothetical protein AQUCO_10500021v1, partial [Aquilegia coerulea])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 41  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 100

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 101 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 160

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 161 VVKVSGVSLLALFKEKKEKPRS 182

[Close]

BLAST of Sed0001101 vs. NCBI nr
Match: OVA09919.1 (Ribosomal protein S12/S23 [Macleaya cordata])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 650 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 709

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 710 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 769

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 770 VVKVSGVSLLALFKEKKEKPRS 791

[Close]

BLAST of Sed0001101 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-74
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.6e-73
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKT G+GA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-71
Identity = 136/142 (95.77%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-69
Identity = 133/142 (93.66%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.9e-62
Identity = 117/143 (81.82%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 60
           MGK RGL   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60

Query: 61  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 120
           QPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 121 KVVKVSGVSLLALFKEKKEKPRS 143
           KVVKV+ VSLLAL+K+KKE+PRS
Sbjct: 121 KVVKVASVSLLALYKQKKERPRS 143

[Close]

BLAST of Sed0001101 vs. ExPASy TrEMBL
Match: A0A059A7I0 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K03200 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.4e-73
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. ExPASy TrEMBL
Match: A0A6J1KCN2 (40S ribosomal protein S23 OS=Cucurbita maxima OX=3661 GN=LOC111494402 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.4e-73
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. ExPASy TrEMBL
Match: A0A1U7W217 (40S ribosomal protein S23 OS=Nicotiana sylvestris OX=4096 GN=LOC104223004 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.4e-73
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. ExPASy TrEMBL
Match: A0A4Y7KWG1 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_000586 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.4e-73
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. ExPASy TrEMBL
Match: A0A022RRU5 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a015865mg PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.4e-73
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 270.4 bits (690), Expect = 8.2e-73
Identity = 136/142 (95.77%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-70
Identity = 133/142 (93.66%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MGKTRGLGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRG+GAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]

BLAST of Sed0001101 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 3.9e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of Sed0001101 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 3.9e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of Sed0001101 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 3.9e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:

BLAST of Sed0001101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580588.1	1.3e-72	99.30	40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia]	[more]
NP_001274976.1	1.3e-72	99.30	40S ribosomal protein S23-like [Solanum tuberosum] >NP_001353813.1 40S ribosomal...	[more]
KAF3946178.1	1.3e-72	99.30	hypothetical protein CMV_027526, partial [Castanea mollissima]	[more]
PIA25887.1	1.3e-72	99.30	hypothetical protein AQUCO_10500021v1, partial [Aquilegia coerulea]	[more]
OVA09919.1	1.3e-72	99.30	Ribosomal protein S12/S23 [Macleaya cordata]	[more]

BLAST of Sed0001101 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46297	1.9e-74	97.89	40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1	[more]
Q9M5Z9	1.6e-73	97.18	40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1	[more]
P49201	1.2e-71	95.77	40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2	[more]
Q9SF35	5.4e-69	93.66	40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2	[more]
Q9GRJ3	2.9e-62	81.82	40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1	[more]

BLAST of Sed0001101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A059A7I0	6.4e-73	99.30	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K03200 PE=3 SV...	[more]
A0A6J1KCN2	6.4e-73	99.30	40S ribosomal protein S23 OS=Cucurbita maxima OX=3661 GN=LOC111494402 PE=3 SV=1	[more]
A0A1U7W217	6.4e-73	99.30	40S ribosomal protein S23 OS=Nicotiana sylvestris OX=4096 GN=LOC104223004 PE=3 S...	[more]
A0A4Y7KWG1	6.4e-73	99.30	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_000586 PE=3 SV=1	[more]
A0A022RRU5	6.4e-73	99.30	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a015865mg PE...	[more]

BLAST of Sed0001101 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02960.1	8.2e-73	95.77	Ribosomal protein S12/S23 family protein	[more]
AT3G09680.1	3.8e-70	93.66	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	3.9e-06	36.26	ribosomal protein S12A	[more]
ATCG01230.1	3.9e-06	36.26	ribosomal protein S12B	[more]
ATCG00905.1	3.9e-06	36.26	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 25..142 e-value: 3.4E-47 score: 160.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..25
None	No IPR available	PANTHER	PTHR11652:SF59	BNACNNG03140D PROTEIN	coord: 1..142
IPR006032	Ribosomal protein S12/S23	PIRSF	PIRSF002133	RPS12p_RPS12a_RPS23e_RPS12o	coord: 16..142 e-value: 4.4E-33 score: 111.4
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 31..141 e-value: 6.7E-50 score: 167.5
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 1..142
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 59..66
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	TIGRFAM	TIGR00982	TIGR00982	coord: 6..141 e-value: 3.2E-53 score: 177.1
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	CDD	cd03367	Ribosomal_S23	coord: 26..139 e-value: 5.10607E-74 score: 214.44
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 20..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001101.1	Sed0001101.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051762	sesquiterpene biosynthetic process
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0003735	structural constituent of ribosome