Sed0001093 (gene) Chayote v1

Overview


Name	Sed0001093
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein RETICULATA-RELATED 1, chloroplastic
Location	LG01: 56116134 .. 56124147 (-)
RNA-Seq Expression	Sed0001093
Synteny	Sed0001093

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTCACCTTCGCCACCTTCAATTTCTTCCATTTCGCCGTTTCTTCCTCTCCAGATTCTTTCCCTTCCAATCTCGACTTCAGGACCCATTTCAAGGCTGTTTCTGTTCATCATTCCTCTAATTTGAGCTACTAGATTCGATGTCATTGTATTTTCTCTGCCGCAGTTGAGGTCATTGCGGCAGTGAGAGGAGGGTTCTAATTCTTTTGATACTAATTCTGAATCTCAAATTGGTGGAGATGGCAGCATTGGAGCTGGGAATGGGTTTGGTGGCGGCGGCGGTGGCAATGGAAATGGCGATGGCGAGGAGGAGGAGGAGGAGGAGGAGTTTGGATCGATATTGAAATTCGACGACGTGATCAAGGAGGCTGACGCTTGTGGAGTTAGACTTCCTCAAAAGATGCTTGAAGCTGCTAAGGCAACTGGGATTCAAGAAGTTTTTCTTGGTCGTTACTTGGACTTGCAGGTAATGATTTTCCACTTCTAAAGTGAATGAATCGGAACTGTTGCATGCTTGTTACCTTATTTATTATTAGCTGTATATTTAGCTACCTCTAGAGATTTTTCTTGATTTGCGGAACATGAATGTGTGATTTTGAGGCTGAAATTTTGTTCAATATGTTGAGTTTTTCTAATATGATTGAACAAACCATTGATATCACTGTGCTGTCATTTTGCTTGTCCTTTAATTATTTTTTTCTTTTTTTCCCAATTGGAATACTTCACCTCTTAGTTCTTTTTAAATTAATGTTGTATGGTTGCTTCTTGGCTTAAGCATAAAGATGATTTTTTTTCTTCTTCTTCTTCTTAATTTAAAGTTATTCTAATTTGTAATATTATAATGAAATGCATTTTGTTTTGGTGTTTTGCAGGGGTTGGGTTTGTTGTTAGGCTTCTTGATGAGTTCCTGCTCCATGTTTCGTGATCGAATGCTAGCAGATCCATCTTTTCTTTTCAAAGTTGGAACCGAGGTTTTTTTTTTATGTTACTTAAATTCAGTTTCAAGCTAATGATCCACAATTCATACCAGCCAATGCGTTATAGTTTTCACCTAGGGTTGCTTTTTGTTGGCATTTTTTAATCCATTTGGAGTATCTTTTGCCATGAGAAATCACATAATTGTCATTTAGATTCATGATTTGGTATTTGAGTCCATTGATTGTTTGTTTTCTTGATGGTTCTCTTCGATCAATTCAGTTGACTTGGATGACTAATTATAAAATTGAATTCCTGATTAATGGATTTAATAAACTTTGCTGATGCAGATAGTCATAGATTCATGTTGTGCTACATTCGCAGAAGTTCAGAAAAGAGGAGAGAATTTCTGGGCAGCGACCTGTATCGAGAGGTTTATTAGGACAGATGCAGCATGCTTATTTTTCTCTACCTAGCAGGTTAATATCACATGCCACGTCTTCTGTTGAAATTTCGTACCTTTCTAAGTTCCAGACTTGTAGTTCCCTGTGTTCCCTTCTTTTATGTTTTATTTACTTCTTGCTGTTGGATTCTTGACAAGGTTTCTTTTGCCACTACTTTGTTTAACATATATGTATTTTTGTAAAATCATTTTCCCCAGATTTGGCCTCAATTTACTGACCATTCTCAATTTTATTTTTGCTTATGCAGTGTTTTTTAAGCTGAAAGGCCTGGGTGTAAATTCACAGTGGAGCAACGAATTGTATCATATTTCTATAAGGCATTGATTTCATTTTTTTGCTAAGCAATGCTTAAACTGGAAAATTACTTTCTCATCCTTGTTCATTGTCTTGTTTCGAAACAACTTCTCAAGACATGCCTCTTGTTTGTCTCGTTCGTACTGTATTTTTGTGGGGTGTTTATTAAACTCATTATCATTGATGCATTTTGGTCCAGGGTGTCTTGTATGGCTCAGTGGGATTTGGATGTGGTCTCATTGGCCAAGGGATTGCTAATTTGATCATGAACGCAAAACGGTAAGCTTTTTTAAATATGTCTTGCATGCCTTGTATTATAAGATGTCTGATGCTATTTTATTTTCTAATATTATTATACTACCTTAATTTTATTTTTATTTGATCATTTATTTGTCTACCATTAAGAAGCTCACCTAAGAGCATCGATCAACACGGATTAGCGTATGACACTAAATAAATAAATTATTACAGTTAAGCGAGGAGCTGAATATATGACGTTTTTTTAAACTTGTAAAATATTCAAGTATAGAATATGGAACTCCCGAAATCTTATGTGCGCTTTGAGTTGTCATAAAAAGATGTATCCTACTTATGAGGTAAGTTGTAATTTGTGGTAGACGTAGGATTCCAATTTTTGTATTGCTTTCATTATTGATTTTGTAATTTTGTCGATACAACTATTAGCTGGTGCTGTTTGATATTGCAGTTTTTTTACCGAAAGGAAAATAAAGATATAGCTAATGCCTTTGTAAAAAAATATTGAGACTGAATAGTCGTTTTTTAAAATTATTCATAGAGGCAATACCTTTATAGAATATACAACAATAACCCTAGCACCAATGGGCATAAAGGGCCTAACACTATAAATATACAATAAACAAATGTATATATATATATACATAATAAATAACTCTAACACTTCCCCTCAAGCCAGAGCAAATATATCTATCATGTCCAGCTTGTTAAAGAGGTAATTTATTCGTGCTCCATTCAAGGCTTTAGTGAGAATATCTCCCAAATGTTCTCCAGTCTTTACATAACTTGTAGAAATCAAGTCGTGTTGTATCTTCTCACGAACAAAATGACAATCCATTTCAATATGCTTAGTTCTTTCGTGAAATGCTGAATTTGAGGATTGATGAATAGTTGTTTGATTTTCACACCATAGTTTCGCAGGTGTTGTGGTCTTTTCTCCCTTTTCATTCAGTAACTGGATTAACCATACTATTTCCTACGTTGATTGAGCCATGACTCTATATTCAGAATCAACACTTGAACGAGAAACCACATTTTGTTTCTTACTCTTCCACGACACTAGATTTCCTCCTACAAAGAAAAAATACCCTGAATAGACCTTCTGTCTTCCTTGGAACTTGCCTAGTCATCATCCAAAACACTCAATATTCATGTGTCCATGATTCTAGTACAACACTCCCTTTCCAACTGCAAATTTTAAGTAACTCGAAATTTGTTCTACGACAGCCTAATGATCCACTATAGGAGATGACATAAACTGACTTACCACACTCACCGAATATGATATATCAGGTCATGTAACTGTCAAGTAGTTCAATTTCCTAACCATTCTCCCATACCTCTTAGGATCTGAAATGCCTCTTCGTCTTTGACAAGTTGCAAATTAGGTACCATCAGAGTACTATACGACTTTATGCCCAATTTTCTTGTTTCAGATAACAAATCAAGAAAATACTTCCTTTGAGGCAGGAAGATGCCTTTCTTACTCCTCATAACCTCAATACCCAAGAAGTATTTAAGGGTTTCTAGACCCTTAGTACAAAATAGGTTATGTAGTAATGTTTTCAACAAGGCTATACCTGAATATCATCTCTAGTAATCACGATATCATCAACATAAACCACTAGAAAAGTAATGCCCTGTGATGATCGTCGATAGAACACATAATGATCTGACGAGCTCTTTTCCATTCCAAATTTCTCCGGTGCTTGACTAAATTTTCCAAACCACATCTGTGGACTCTGTTTCAAGCCATACAATGATTTTTTTAAGTTGGCATACCTTGGAATTCTCCCCTTGAGCAACAAACCCAGGTCCGCTCCATATAACTTCTTCATGAAGATCCTCATGCATTCACACATTCTTGATATCTAGCTGATATAACGACCAAGAGTTCGAAGCAGCCATGAATATAAATAACCAAATAGAGGTCATCTTTACAACTGGGGAGAAAGTATCACTATAGTCGATCCCATAAGTTTGAGCATAACTCTCAGAAACTAGCTCTGCTTTCAGATGAGCCACTAATCCATTAGAATTGAATTTGACAACATACACCCATTTATAACCGATTGTCTGTTTATCTGTTGGGCGTTCTACTAGCTTTCAAGTATCATTGGCATCCAACGCAGTCACCTCCTCAATCATGGCTTATCGCCACCCAGGATGTGATAGTGCTTCATTTGTATTCTTAGGTAAAGACACATAATAAAGAGATGTGAGAAATGAAAAAGTGGGTGAGGATACCTAATGATAAGACAAACAAAGAAATAGGATAGGTACACGAACGTTTACCTTTGCGAAAGGCAATCAGTAAATCAAGATCATCACACGTTTTCAAGTTAGACATTGAAGAAGGCTCTAGTGTAGGGTATGTATCTATAGGTTGTTGATGCGTATGCCTTGAGTATACCTGAATGATAGGAGGACATGAAGGAATAAACGCTTATGGAGACGGATCAAAACAATATGGTGTAGAGACCACTTCATAGAGAAAAAAATCATTCGTCTCATGGGAATGACTAGATGGTGAACTAAAGGGCACATCTTCAAAGAATGTAACATCAAATGAGACAAAGAACTTGTTAGTACTTGGACAATAACAAGGATAGCCCTTTTGAACACGAAAATAACCCAAGAAGATACATTTCAAAGATTTTGGATCGAATTTAGTACGACGAGGATTAACATCCCAAACAAAACATGTGCAACCAAATATTTTAGGTAAAATATGGAACATTTCATTGGTAGGAAATAAGACTTTAAATGGAATCTTACCACCTAAAACTGTCAAAGGCATCGATTTATTAAAAAAACAAGCTGTAGACACGACATCAACCCAAAAATGCTTTGGGACATTGACGTGAAATGAAAAAAATCCTTGTAGTTTCGAGTAAATGTCATTTTTTTCTTTTAGCTACCTCATTTTGAGATGGAGTGTCAGGACACAAAGATTGATGAATAATGCCTTTATCACAAAGATAAACACCAAGGATGTTAGAAAAATATTCACCACCATTATCAGTGTGTAAGATTTTGATAGAGGCGTTGCATTGATTTCAAATTTCAGTATTGAATGCACAAAAATGAGAGAATCATTCTGAACGAGTTTTCATGAAATAAACTCAGGTAAGACGAGAGTAGTCTGACAAATGTAACAAAATAATGAAAACTTGTTTTGGACAATAAAGGACTTGGACCCCAGACATCTGAATGAACTAATTCAAAAGTAGCATTAGCTCTTATATTGACTATAGGACTCGAAGTAAGACGATGAAATTTTGAAAACTTACAAGACTCACAATTCAAAGATGATAACTTACTAAACTCAGGAAATAACTTATTTAAAACTAACAACGGCAGATGACCTAACTGACAATGGAGCTGGAACAAAGACTTAGTGCTCGAACAAGCTACAATGTTTTCTGGACTTTGATCAATAATGTAGAGACCTGCAGATTCACGCTCTCTACTAATAATCTTTTTCGTCATATGATCCTGAAACAAGCAATAACCAGGAAAACATTAGGCATGACAATTTAGATCACAAGAAAGTTGACTTACTGAAATTAGATTGTATGTGACTGTAGGTACACATAACACGAAAGATAAGGGAAGTGTAGAAGTAAGTGTTATCGAGCTCAATGCTTAGATAGGGAACGGGGACCCATCTGCCAAAGTGACATTAGGAAAGGATTCAGGCGACAAAGAAATAGCAAACAAGTTCATGTTACCTGTTATATGGGCAGTGGCACCCGAGTCTATGACCTATTTGGAGGACGATGTAAGAAGACAATGGTTGTTACCTGATTCTGCAAGAGTTGCAATAGGAAGATTTGGAAACGATGACTGCAATGAATCATTTGATACTCAGAGTTTAGCAAACTCGTCAGCTAAAATATTCTCATTGGATGCAAGATGGGTAGTCTAAAGTTTCTGATTCTAATACTGCAACTTCCTACAGTCTTTTTCCACATGATCCGGGTTGCGACAATAATAACATCTCATATCTCCTCTCGAATCTGGACGTTGGTCATAACTCGGCCTAGGTGTGTTTGCACTCACACCCTTCGAAAAACAAGAATCCTCTATATGATCCTCCATCTCATTACTCGACAGATGAAACCAAATAGTTTTATGGTAATCGAGATAGTTTGAGCCATTTAACTTACGCTTCATAATTTCCATCGGATGAGAAATCACACTTTGCTTAGTTTTTTCCATAAATTATCAACAAAATAAAATAAATCAACAAACAACTAGTATTCTCAGTAAAAATTAGATCTGAACGAAGCAAAAAATTAGAACGAAAGTACCGAAAAAAACCCTCAACGGTCAGACTTGGTACAGATGGAGGCTGAAAATAGAAATGCAATTCCATTAGCTTGTAGGGAATGTCGTCTCGAGAAAAACCCAACAAAAAAAATTCAGAATCGTAGTCCAAACGAACAACAAACAAAAATCAGCAGCGAATAGAATAGAAAACGTCAGATCAGAAGCACTCGTTGTTGGATCGAATTTTTTTTTTAACAAAATTGTAAAGGAGGTTGACGCGGAAAAAACCCAACCAAGAACGTGTCAAACAAGCCAGCCATGCGCAGCTCGTGTTTTCAGCGATGAAAATCTTTTTTTTGGCTCGTGAGCTTGAATTGCTCGTCATTTTGCGACGAAACTTGTATAGATGTGTAGATCGGCCCTCTCTGAATATTTGGTGTAAGTTTCGTCGAAAAAGGACTTCAAAAAATTTTGACAGCTAACGGTCGATTTGACAGATGACAGACGATTGTTGTCGACTGACAGACAACAACTCTTGACGGTAAAACCAAAACTCGAAAGATCTCGATATGTGAACACCAAACCCTAATTTCAAAGAAGCCAAGACGCCTATGATATCATGTAAAACAATATTGAGATTGAATAGTCGTTTTTTTATTATTCATGGAGGCAATACCTTTATATAGAATATATAATAGTAACTCTAGCTACCAATGAGCCTAAATGGCCTAACCCTATAAATGCACAATTAGCAAATTTATAATAATAAATAAATAACTTTAACACACTTGGTTTTTTTTCCCTAGTTTTTCGTGTTTTTCACTTTTTTTTTTCATCCCTCGAAATCTTTCTTAAATCTGTGGGAAAATGACTTGTAGTCTGACTGCATGTGTTAATTCAGTTTTTCTTAAATGGTACTTTGTGTTTTCTGTCAACTACGAGTTAACCAAACAAATTTTTCGAATTGGTCGACGCGTATGAAAGTTGGATCCAAACACTCACTAATATTAAAAAAAAAGAAGCAAAGAATTGGATTATGATCAACTATAAAAGCTTTTCGGTTATCATCTAGAATACCCTATACATAATACATCCATCAAATCTCTATCTATATACTGATCTTTGGAACTATATTTAATTATTCAGGTGCATAAAGAAATCAAATGAGGATGTGCATGTGCCTCCGCTCATTCAGAGTGCTTCTCTTTGGGGTACTTCTATCCTCTCTATTTTACTCTACTAATCTGTTTCTTAATGAGAGACAAATTATCTTGTTTCAAATTTATATGAGTAAGTTCTCACCTTTTGAGTTGATCTGAAGCAATTTAGCATAACACGTCATAATAAATCTTTGTTTGGTTAATCAAAATTATGATCCATAATTAGAAGTAGGTTAATCCACAAGTCACTTATTTCTTAGTCTAACTTACTTCCCCTTCCATTATATTTTTCTTGTACGTAAGTTTGATCAAGTTCAACTTGGAATCAATATAAGAATCTTGATGGAAAGCTTAACCGAAAACGCGAGATTTATTGTTAGTGTTATTAGTCTATTCGGTTTGGTCCTCATGCAAACTACAACTTACAGACTTCTTTTGCATATGTTAATATTAATTTGTAATTCTAAATCCTCTTTTTGCCTTCATTCAGGTGTTTTCCTTGCGGTATCTTCCAGCACTAGTTATTAAATAGTGAATGCAATCGAGCAAGTGGTCGAAGCCTCACCTTTGGCGAAGAAGATTCCACCAGTGGCAATGGCTTTCACAATTGGTGTGAGGTTTGCCAACAACACCTATGGTGGTATGTAG

mRNA sequence

ATGTCACTCACCTTCGCCACCTTCAATTTCTTCCATTTCGCCGTTTCTTCCTCTCCAGATTCTTTCCCTTCCAATCTCGACTTCAGGACCCATTTCAAGGCTGTTTCTGGTTCTAATTCTTTTGATACTAATTCTGAATCTCAAATTGGTGGAGATGGCAGCATTGGAGCTGGGAATGGGTTTGGTGGCGGCGGCGGTGGCAATGGAAATGGCGATGGCGAGGAGGAGGAGGAGGAGGAGGAGTTTGGATCGATATTGAAATTCGACGACGTGATCAAGGAGGCTGACGCTTGTGGAGTTAGACTTCCTCAAAAGATGCTTGAAGCTGCTAAGGCAACTGGGATTCAAGAAGTTTTTCTTGGTCGTTACTTGGACTTGCAGGGGTTGGGTTTGTTGTTAGGCTTCTTGATGAGTTCCTGCTCCATGTTTCGTGATCGAATGCTAGCAGATCCATCTTTTCTTTTCAAAGTTGGAACCGAGATAGTCATAGATTCATGTTGTGCTACATTCGCAGAAGTTCAGAAAAGAGGAGAGAATTTCTGGGCAGCGACCTCTGAAAGGCCTGGGTGTAAATTCACAGTGGAGCAACGAATTGTATCATATTTCTATAAGGGTGTCTTGTATGGCTCAGTGGGATTTGGATGTGGTCTCATTGGCCAAGGGATTGCTAATTTGATCATGAACGCAAAACGGTGCATAAAGAAATCAAATGAGGATGTGCATGTGCCTCCGCTCATTCAGAGTGCTTCTCTTTGGGTGAATGCAATCGAGCAAGTGGTCGAAGCCTCACCTTTGGCGAAGAAGATTCCACCAGTGGCAATGGCTTTCACAATTGGTGTGAGGTTTGCCAACAACACCTATGGTGGTATGTAG

Coding sequence (CDS)

ATGTCACTCACCTTCGCCACCTTCAATTTCTTCCATTTCGCCGTTTCTTCCTCTCCAGATTCTTTCCCTTCCAATCTCGACTTCAGGACCCATTTCAAGGCTGTTTCTGGTTCTAATTCTTTTGATACTAATTCTGAATCTCAAATTGGTGGAGATGGCAGCATTGGAGCTGGGAATGGGTTTGGTGGCGGCGGCGGTGGCAATGGAAATGGCGATGGCGAGGAGGAGGAGGAGGAGGAGGAGTTTGGATCGATATTGAAATTCGACGACGTGATCAAGGAGGCTGACGCTTGTGGAGTTAGACTTCCTCAAAAGATGCTTGAAGCTGCTAAGGCAACTGGGATTCAAGAAGTTTTTCTTGGTCGTTACTTGGACTTGCAGGGGTTGGGTTTGTTGTTAGGCTTCTTGATGAGTTCCTGCTCCATGTTTCGTGATCGAATGCTAGCAGATCCATCTTTTCTTTTCAAAGTTGGAACCGAGATAGTCATAGATTCATGTTGTGCTACATTCGCAGAAGTTCAGAAAAGAGGAGAGAATTTCTGGGCAGCGACCTCTGAAAGGCCTGGGTGTAAATTCACAGTGGAGCAACGAATTGTATCATATTTCTATAAGGGTGTCTTGTATGGCTCAGTGGGATTTGGATGTGGTCTCATTGGCCAAGGGATTGCTAATTTGATCATGAACGCAAAACGGTGCATAAAGAAATCAAATGAGGATGTGCATGTGCCTCCGCTCATTCAGAGTGCTTCTCTTTGGGTGAATGCAATCGAGCAAGTGGTCGAAGCCTCACCTTTGGCGAAGAAGATTCCACCAGTGGCAATGGCTTTCACAATTGGTGTGAGGTTTGCCAACAACACCTATGGTGGTATGTAG

Protein sequence

MSLTFATFNFFHFAVSSSPDSFPSNLDFRTHFKAVSGSNSFDTNSESQIGGDGSIGAGNGFGGGGGGNGNGDGEEEEEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLLLGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAATSERPGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQGIANLIMNAKRCIKKSNEDVHVPPLIQSASLWVNAIEQVVEASPLAKKIPPVAMAFTIGVRFANNTYGGM

Homology

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BLAST of Sed0001093 vs. NCBI nr
Match: XP_022140542.1 (protein RETICULATA-RELATED 1, chloroplastic [Momordica charantia])

HSP 1 Score: 388.3 bits (996), Expect = 5.9e-104
Identity = 237/408 (58.09%), Postives = 257/408 (62.99%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLDFRT-------------HFKAVS----------- 60
           MS+  ++FN FH AV S+PD FPS L+ R               FK V+           
Sbjct: 1   MSVASSSFNLFHSAVPSNPDVFPSILEVRASGCFRWPCSESTGSFKLVALRHSSKLNCRV 60

Query: 61  --------------------------GSNSFDTNSESQIGGDGSI-GAGNGFGGGGGGNG 120
                                      S SFD NSE +IGGDG I G GN FGGGGGG+G
Sbjct: 61  RLHCVSSESAAETIAASEDGRTGSAENSKSFDVNSEPRIGGDGGIGGGGNSFGGGGGGDG 120

Query: 121 NGDGEEEEEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGL 180
           NG+G + E+E EFG ILKFDDVIKEADA GVRLP  MLEAAKATGI+EVFL RYLDLQG 
Sbjct: 121 NGNG-DSEDEREFGPILKFDDVIKEADARGVRLPPDMLEAAKATGIREVFLLRYLDLQGS 180

Query: 181 GLLLGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA------ 240
           G LLGFLM+SCSMFRDRMLADPSFLFKVGTE+VIDSCCATFAEVQKRGENFWA       
Sbjct: 181 GWLLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAA 240

Query: 241 -----------------------------------------------TSERPGCKFTVEQ 291
                                                           +ERPGC+FTV+Q
Sbjct: 241 DLLVGVVVDVALVGMLAPYARIGQRPVSRGLLGQMQNAYSSLPSSVFEAERPGCRFTVKQ 300

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BLAST of Sed0001093 vs. NCBI nr
Match: XP_022996050.1 (protein RETICULATA-RELATED 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 386.7 bits (992), Expect = 1.7e-103
Identity = 235/401 (58.60%), Postives = 253/401 (63.09%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLDF-------------RTHFKAVS----------- 60
           MS+T   FN  H AV+SSPD+FPS L+              R+ FK VS           
Sbjct: 1   MSVTSPCFNLIHSAVASSPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  ------------------GSNSFDTNSESQIGGDGSIGA-GNGFGGGGGGNGNGDGE-EE 120
                              S  FDT+ ES+IGGDG  G  GNGFGG GGG G GDG  + 
Sbjct: 61  PLKCFSSEAAAETIAAAKDSKVFDTDFESRIGGDGGFGGDGNGFGGNGGGGGGGDGNGDG 120

Query: 121 EEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLLLGFL 180
           EEE EFG ILKFDDVIKEADA GVRLP+ MLEAAKATGI+EVFL RYLDLQG G LLGFL
Sbjct: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180

Query: 181 MSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA------------- 240
           M+SCSMFRDRMLADPSFLFKVGTE+VIDSCCATFAEVQKRGENFWA              
Sbjct: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240

Query: 241 ----------------------------------------TSERPGCKFTVEQRIVSYFY 291
                                                    +ERPGCKFTV+QRI S+FY
Sbjct: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300

[Close]

BLAST of Sed0001093 vs. NCBI nr
Match: XP_022958431.1 (protein RETICULATA-RELATED 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 386.7 bits (992), Expect = 1.7e-103
Identity = 236/401 (58.85%), Postives = 255/401 (63.59%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLDF-------------RTHFKAVS----------- 60
           MSLT   FN  H AV+S+PD+FPS L+              R+ FK VS           
Sbjct: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  ------------------GSNSFDTNSESQIGGDGSIGA-GNGFGG-GGGGNGNGDGEEE 120
                              S  FDT+ ES+IGGDG  G  GNGFGG GGGG+GNGDG   
Sbjct: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDG--- 120

Query: 121 EEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLLLGFL 180
           EEE EFG ILKFDDVIKEADA GVRLP+ MLEAAKATGI+EVFL RYLDLQG G LLGFL
Sbjct: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180

Query: 181 MSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA------------- 240
           M+SCSMFRDRMLADPSFLFKVGTE+VIDSCCATFAEVQKRGENFWA              
Sbjct: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240

Query: 241 ----------------------------------------TSERPGCKFTVEQRIVSYFY 291
                                                    +ERPGCKFTV+QRI S+FY
Sbjct: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300

[Close]

BLAST of Sed0001093 vs. NCBI nr
Match: KAG6606017.1 (Protein RETICULATA-RELATED 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035966.1 Protein RETICULATA-RELATED 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 384.0 bits (985), Expect = 1.1e-102
Identity = 232/401 (57.86%), Postives = 252/401 (62.84%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLDF-------------RTHFKAVS----------- 60
           MSLT   FN  H A++S+PD+FPS L+              R+ FK VS           
Sbjct: 1   MSLTSPCFNLIHSAITSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  ------------------GSNSFDTNSESQIGGDGSIGA-GNGFGGGGGGNGNGDGE-EE 120
                              S  FDT+ ES+IGGDG  G  GNGFGG GGG   GDG  + 
Sbjct: 61  PLQCFSSEAAAETIAAAKDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGGDGNGDG 120

Query: 121 EEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLLLGFL 180
           EEE EFG ILKFDDVIKEADA GVRLP+ MLEAAKATGI+EVFL RYLDLQG G LLGFL
Sbjct: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180

Query: 181 MSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA------------- 240
           M+SCSMFRDRMLADPSFLFKVGTE+VIDSCCATFAEVQKRGENFWA              
Sbjct: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240

Query: 241 ----------------------------------------TSERPGCKFTVEQRIVSYFY 291
                                                    +ERPGCKFTV+QRI S+FY
Sbjct: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300

[Close]

BLAST of Sed0001093 vs. NCBI nr
Match: XP_023534638.1 (protein RETICULATA-RELATED 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.3 bits (983), Expect = 1.9e-102
Identity = 230/394 (58.38%), Postives = 251/394 (63.71%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLDF-------------RTHFKAVS----------- 60
           MS+T   FN  H AV+S+PD+FPS L+              R+ FK V+           
Sbjct: 1   MSVTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPSSESRSSFKVVAFHYSSNVSCRI 60

Query: 61  ------------GSNSFDTNSESQIGGDGSIGA-GNGFGGGGGGNGNGDGEEEEEEEEFG 120
                        S  FDT+ ES+IGGDG  G  GNGFGG GGG+G     + EEE EFG
Sbjct: 61  PLKCFSSEAAAKDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGDGGDGNGDGEEEREFG 120

Query: 121 SILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLLLGFLMSSCSMF 180
            ILKFDDVIKEADA GVRLP+ MLEAAKATGI+EVFL RYLDLQG G LLGFLM+SCSMF
Sbjct: 121 RILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFLMNSCSMF 180

Query: 181 RDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA-------------------- 240
           RDRMLADPSFLFKVGTE+VIDSCCATFAEVQKRGENFWA                     
Sbjct: 181 RDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVVVDIALVG 240

Query: 241 ---------------------------------TSERPGCKFTVEQRIVSYFYKGVLYGS 291
                                             +ERPGCKFTV+QRI S+FYKGVLYGS
Sbjct: 241 MLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFYKGVLYGS 300

[Close]

BLAST of Sed0001093 vs. ExPASy Swiss-Prot
Match: Q9FGP9 (Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER1 PE=1 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.8e-80
Identity = 172/321 (53.58%), Postives = 206/321 (64.17%), Query Frame = 0


Query: 42  DTNSESQIGGDGSIGAGNGFGGGGGGNGNGDGEEEE----EEEEFGSILKFDDVIKEADA 101
           D N  +  GG+G    GNG GGGGGG+G GD  E+E    EE+EFG ILKF++V+KE + 
Sbjct: 105 DENGNNDGGGNG----GNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETER 164

Query: 102 CGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLLLGFLMSSCSMFRDRMLADPSFLFKV 161
            G+ LP+ MLEAAK+ GI+++FL RYLDLQG    LGFLM SC+M R+RMLADPSFLFKV
Sbjct: 165 RGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKV 224

Query: 162 GTEIVIDSCCATFAEVQKRGENFWAA---------------------------------- 221
           GTE+ IDSCCATFAEVQKRGE+FW+                                   
Sbjct: 225 GTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVA 284

Query: 222 --------------------TSERPGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQGIA 281
                                +ERPGCKF+V QRI ++FYKG+LYGSVGFGCGLIGQGIA
Sbjct: 285 STGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIA 344

Query: 282 NLIMNAKRCIKKSNEDVHVPPLIQSASLW--------------VNAIEQVVEASPLAKKI 291
           NLIM AKR +KKS EDV +PPL +SA+LW              +N +E+VVE S  AK+I
Sbjct: 345 NLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRI 404

[Close]

BLAST of Sed0001093 vs. ExPASy Swiss-Prot
Match: B9DFK5 (Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.1e-75
Identity = 163/309 (52.75%), Postives = 197/309 (63.75%), Query Frame = 0


Query: 51  GDGSIGA-GNGFGGGGGGNGNGDGE-EEEEEEEFGSILKFDDVIKEADACGVRLPQKMLE 110
           GDG  G+ GNG GGGGG  G GDGE E+ EE+EFG ILKF++V+KE +A G  LP  MLE
Sbjct: 112 GDGFNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLE 171

Query: 111 AAKATGIQEVFLGRYLDLQGLGLLLGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCA 170
           AAK  GI++V L RYLDLQ    LLGF + S +M R+RMLADPSFLFK+G EIVIDSCCA
Sbjct: 172 AAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCA 231

Query: 171 TFAEVQKRGENFWAA--------------------------------------------- 230
           T AEVQKRG++FWA                                              
Sbjct: 232 TVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAY 291

Query: 231 --------TSERPGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQGIANLIMNAKRCIKK 290
                    +ERPGC+F+ +QR+ +YFYKG++YG+VGFGCG++GQGIANLIM AKR I K
Sbjct: 292 NALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINK 351

[Close]

BLAST of Sed0001093 vs. ExPASy Swiss-Prot
Match: Q9C9Z2 (Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER3 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-06
Identity = 74/255 (29.02%), Postives = 103/255 (40.39%), Query Frame = 0


Query: 50  GGDGSIGAGNGFGGGGGGNGNGDGEEEEEEEEFGSILKFDDVIKEADACGVRLPQKMLEA 109
           G  G+ G G+G GGGGGG G   GE  EE   +G I  F    +   A   + P K+L  
Sbjct: 66  GSTGNNGGGSGSGGGGGGFGGSGGEASEESSPWGPIGLFIQGWRSRVAADPQFPFKVL-M 125

Query: 110 AKATGIQEVFLGRYLDLQGLGL-LLGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCA 169
            +  G+    LG        GL  L F+ S+  +           +       ++    A
Sbjct: 126 EEIVGLSACVLGDMASRPNFGLNELDFVFSTLVV---------GSILNFVLMYMLAPTAA 185

Query: 170 TFAEVQKRGENFWAATSER--PGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQGIAN-L 229
           T    Q     F    S        FTV  R  +  YKG+++ SVG   GL+G  I+N L
Sbjct: 186 TLGSSQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGL 245

Query: 230 IMNAKRCIKKSNEDVHVPPLIQSASLW-------VNAIEQVVEASP--LAKKIPPVAMAF 289
           IM  K+           PP + ++  W        NA  Q +      LAK +PP+    
Sbjct: 246 IMLRKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKVLPPLVFKT 305

Query: 290 TIGV-RFANNTYGGM 291
           ++ V R ANN  GGM
Sbjct: 306 SVIVLRCANNVAGGM 310

[Close]

BLAST of Sed0001093 vs. ExPASy Swiss-Prot
Match: Q9C9Z3 (Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.6e-05
Identity = 73/261 (27.97%), Postives = 102/261 (39.08%), Query Frame = 0


Query: 50  GGDGSIGAGNGFGGGGGGNGNGDGEEEEEEEEFGSILKFDDVIKEADACGVRLPQKMLEA 109
           GG GSIG   G  G GGG G   G EEEE   +G +  F    +   A   + P K+L  
Sbjct: 63  GGGGSIGNHGGGSGSGGGGGGYGGSEEEESSPWGPLGLFIQGWRSRVAADSQFPFKVL-M 122

Query: 110 AKATGIQEVFLGRYLDLQGLGL-LLGFLMS-----SCSMFRDRMLADPSFLFKVGTEI-- 169
               G+    LG        GL  L F+ S     S   F    L  PS +    + +  
Sbjct: 123 EMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPSAISHGSSNLLP 182

Query: 170 -VIDSCCATFAEVQKRGENFWAATSERPGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQ 229
            +  SC ++    Q                 FT+  R  +  YKG+++ +VG   GL+G 
Sbjct: 183 GIFRSCPSSHMFEQG---------------NFTLMNRFGTLVYKGMVFATVGLAAGLVGT 242

Query: 230 GIAN-LIMNAKRCIKKSNEDVHVPPLIQSASLW-------VNAIEQVVEASP--LAKKIP 289
            I+N LIM  K+           PP + ++  W        N   Q +  +   L K +P
Sbjct: 243 AISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLEKSLP 302

Query: 290 P-VAMAFTIGVRFANNTYGGM 291
           P V     I +R  NN  GGM
Sbjct: 303 PLVFKTSVIALRVVNNVLGGM 307

[Close]

BLAST of Sed0001093 vs. ExPASy TrEMBL
Match: A0A6J1CHA0 (protein RETICULATA-RELATED 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011177 PE=3 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.9e-104
Identity = 237/408 (58.09%), Postives = 257/408 (62.99%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLDFRT-------------HFKAVS----------- 60
           MS+  ++FN FH AV S+PD FPS L+ R               FK V+           
Sbjct: 1   MSVASSSFNLFHSAVPSNPDVFPSILEVRASGCFRWPCSESTGSFKLVALRHSSKLNCRV 60

Query: 61  --------------------------GSNSFDTNSESQIGGDGSI-GAGNGFGGGGGGNG 120
                                      S SFD NSE +IGGDG I G GN FGGGGGG+G
Sbjct: 61  RLHCVSSESAAETIAASEDGRTGSAENSKSFDVNSEPRIGGDGGIGGGGNSFGGGGGGDG 120

Query: 121 NGDGEEEEEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGL 180
           NG+G + E+E EFG ILKFDDVIKEADA GVRLP  MLEAAKATGI+EVFL RYLDLQG 
Sbjct: 121 NGNG-DSEDEREFGPILKFDDVIKEADARGVRLPPDMLEAAKATGIREVFLLRYLDLQGS 180

Query: 181 GLLLGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA------ 240
           G LLGFLM+SCSMFRDRMLADPSFLFKVGTE+VIDSCCATFAEVQKRGENFWA       
Sbjct: 181 GWLLGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAA 240

Query: 241 -----------------------------------------------TSERPGCKFTVEQ 291
                                                           +ERPGC+FTV+Q
Sbjct: 241 DLLVGVVVDVALVGMLAPYARIGQRPVSRGLLGQMQNAYSSLPSSVFEAERPGCRFTVKQ 300

[Close]

BLAST of Sed0001093 vs. ExPASy TrEMBL
Match: A0A6J1K5M0 (protein RETICULATA-RELATED 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491373 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 8.4e-104
Identity = 235/401 (58.60%), Postives = 253/401 (63.09%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLDF-------------RTHFKAVS----------- 60
           MS+T   FN  H AV+SSPD+FPS L+              R+ FK VS           
Sbjct: 1   MSVTSPCFNLIHSAVASSPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  ------------------GSNSFDTNSESQIGGDGSIGA-GNGFGGGGGGNGNGDGE-EE 120
                              S  FDT+ ES+IGGDG  G  GNGFGG GGG G GDG  + 
Sbjct: 61  PLKCFSSEAAAETIAAAKDSKVFDTDFESRIGGDGGFGGDGNGFGGNGGGGGGGDGNGDG 120

Query: 121 EEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLLLGFL 180
           EEE EFG ILKFDDVIKEADA GVRLP+ MLEAAKATGI+EVFL RYLDLQG G LLGFL
Sbjct: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180

Query: 181 MSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA------------- 240
           M+SCSMFRDRMLADPSFLFKVGTE+VIDSCCATFAEVQKRGENFWA              
Sbjct: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240

Query: 241 ----------------------------------------TSERPGCKFTVEQRIVSYFY 291
                                                    +ERPGCKFTV+QRI S+FY
Sbjct: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300

[Close]

BLAST of Sed0001093 vs. ExPASy TrEMBL
Match: A0A6J1H219 (protein RETICULATA-RELATED 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111459653 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 8.4e-104
Identity = 236/401 (58.85%), Postives = 255/401 (63.59%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLDF-------------RTHFKAVS----------- 60
           MSLT   FN  H AV+S+PD+FPS L+              R+ FK VS           
Sbjct: 1   MSLTSPCFNLIHSAVTSTPDAFPSKLEVRASGCFTWPCSESRSSFKVVSLHYSSNVSCRI 60

Query: 61  ------------------GSNSFDTNSESQIGGDGSIGA-GNGFGG-GGGGNGNGDGEEE 120
                              S  FDT+ ES+IGGDG  G  GNGFGG GGGG+GNGDG   
Sbjct: 61  PLQCFSSEAAAETIAAANDSKVFDTDFESRIGGDGGFGGDGNGFGGSGGGGDGNGDG--- 120

Query: 121 EEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLLLGFL 180
           EEE EFG ILKFDDVIKEADA GVRLP+ MLEAAKATGI+EVFL RYLDLQG G LLGFL
Sbjct: 121 EEEREFGRILKFDDVIKEADARGVRLPEDMLEAAKATGIREVFLQRYLDLQGSGWLLGFL 180

Query: 181 MSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA------------- 240
           M+SCSMFRDRMLADPSFLFKVGTE+VIDSCCATFAEVQKRGENFWA              
Sbjct: 181 MNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLLVGVV 240

Query: 241 ----------------------------------------TSERPGCKFTVEQRIVSYFY 291
                                                    +ERPGCKFTV+QRI S+FY
Sbjct: 241 VDIALVGMLAPYARIGQRPVSRGLLGQMQRAYSSLPSSVFEAERPGCKFTVKQRIASFFY 300

[Close]

BLAST of Sed0001093 vs. ExPASy TrEMBL
Match: A0A0A0KBM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G150470 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.7e-102
Identity = 230/405 (56.79%), Postives = 255/405 (62.96%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLD------------------------------FRT 60
           MS+T ++FN F   VSS+PD+F SNL+                              FRT
Sbjct: 1   MSVTSSSFNLFRSTVSSNPDAFLSNLEVRASGCFKWPCSEPKGSFKLVARHHSSNVNFRT 60

Query: 61  HFKAVSGSNSF-----------------DTNSESQIGGDGSI-GAGNGFGGGGGGNGNGD 120
               +S   +                  D +SES+I GDG + G GN FGGGGGG+GNGD
Sbjct: 61  RLNCISSEAAAAAAAETTVAPGDSKVVDDFDSESRIDGDGGVGGGGNAFGGGGGGDGNGD 120

Query: 121 GEEEEEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLL 180
           G   E+E+EFG +LKFDDVIKEADA GVRLP  MLEAAKATGI+EVFL RYLDLQG G L
Sbjct: 121 G---EDEKEFGPLLKFDDVIKEADARGVRLPMDMLEAAKATGIREVFLHRYLDLQGSGWL 180

Query: 181 LGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA--------- 240
           LGFLM+SCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWA          
Sbjct: 181 LGFLMNSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAEFELFAADLL 240

Query: 241 --------------------------------------------TSERPGCKFTVEQRIV 291
                                                        +ERPGCKFTV+QRI 
Sbjct: 241 VGIVVDVALVGMLAPYARIGQRPVSSGLLGQMQHAYSSLPSSVFEAERPGCKFTVKQRIA 300

[Close]

BLAST of Sed0001093 vs. ExPASy TrEMBL
Match: A0A5D3BCI2 (Protein RETICULATA-RELATED 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26G00110 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 6.6e-101
Identity = 232/405 (57.28%), Postives = 254/405 (62.72%), Query Frame = 0


Query: 1   MSLTFATFNFFHFAVSSSPDSFPSNLDFRT-------------HFKAVSG---------- 60
           MS+  ++FN FH  VSS+PD+F SNLD R               FK VS           
Sbjct: 1   MSVASSSFNLFHSTVSSNPDAFLSNLDVRASGCFRWPCSEPKGSFKLVSSLHHSSNVNFR 60

Query: 61  ---------------------SNSFD-TNSESQIGGDGSI-GAGNGFG--GGGGGNGNGD 120
                                S  FD  +SE +I GDG + G GN FG  GGGGG+GNGD
Sbjct: 61  IRLNCISSEAAAAETIVAPGDSKVFDGVDSEPRIDGDGGVGGGGNAFGGSGGGGGDGNGD 120

Query: 121 GEEEEEEEEFGSILKFDDVIKEADACGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLL 180
           G   E+E EFG +LKFDDVIKEADA GVRLP  MLEAAKATGI+EVFL RYLDLQG G L
Sbjct: 121 G---EDEREFGPLLKFDDVIKEADARGVRLPTDMLEAAKATGIREVFLHRYLDLQGSGWL 180

Query: 181 LGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGENFWAA--------- 240
           LGFLM+SCSMFRDRMLADPSFLFKVGTE+VIDSCCATFAEVQKRGENFWA          
Sbjct: 181 LGFLMNSCSMFRDRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGENFWAEFELFAADLL 240

Query: 241 --------------------------------------------TSERPGCKFTVEQRIV 291
                                                        +ERPGCKFTV+QRI 
Sbjct: 241 VGIVVDVALVGMLAPYARIGQRPVSSGLLGQMQHAYSSLPSSVFEAERPGCKFTVKQRIA 300

[Close]

BLAST of Sed0001093 vs. TAIR 10
Match: AT5G22790.1 (reticulata-related 1 )

HSP 1 Score: 300.1 bits (767), Expect = 2.0e-81
Identity = 172/321 (53.58%), Postives = 206/321 (64.17%), Query Frame = 0


Query: 42  DTNSESQIGGDGSIGAGNGFGGGGGGNGNGDGEEEE----EEEEFGSILKFDDVIKEADA 101
           D N  +  GG+G    GNG GGGGGG+G GD  E+E    EE+EFG ILKF++V+KE + 
Sbjct: 105 DENGNNDGGGNG----GNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETER 164

Query: 102 CGVRLPQKMLEAAKATGIQEVFLGRYLDLQGLGLLLGFLMSSCSMFRDRMLADPSFLFKV 161
            G+ LP+ MLEAAK+ GI+++FL RYLDLQG    LGFLM SC+M R+RMLADPSFLFKV
Sbjct: 165 RGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKV 224

Query: 162 GTEIVIDSCCATFAEVQKRGENFWAA---------------------------------- 221
           GTE+ IDSCCATFAEVQKRGE+FW+                                   
Sbjct: 225 GTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVA 284

Query: 222 --------------------TSERPGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQGIA 281
                                +ERPGCKF+V QRI ++FYKG+LYGSVGFGCGLIGQGIA
Sbjct: 285 STGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIA 344

Query: 282 NLIMNAKRCIKKSNEDVHVPPLIQSASLW--------------VNAIEQVVEASPLAKKI 291
           NLIM AKR +KKS EDV +PPL +SA+LW              +N +E+VVE S  AK+I
Sbjct: 345 NLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRI 404

[Close]

BLAST of Sed0001093 vs. TAIR 10
Match: AT2G37860.3 (Protein of unknown function (DUF3411) )

HSP 1 Score: 283.9 bits (725), Expect = 1.5e-76
Identity = 163/309 (52.75%), Postives = 197/309 (63.75%), Query Frame = 0


Query: 51  GDGSIGA-GNGFGGGGGGNGNGDGE-EEEEEEEFGSILKFDDVIKEADACGVRLPQKMLE 110
           GDG  G+ GNG GGGGG  G GDGE E+ EE+EFG ILKF++V+KE +A G  LP  MLE
Sbjct: 112 GDGFNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLE 171

Query: 111 AAKATGIQEVFLGRYLDLQGLGLLLGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCA 170
           AAK  GI++V L RYLDLQ    LLGF + S +M R+RMLADPSFLFK+G EIVIDSCCA
Sbjct: 172 AAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCA 231

Query: 171 TFAEVQKRGENFWAA--------------------------------------------- 230
           T AEVQKRG++FWA                                              
Sbjct: 232 TVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAY 291

Query: 231 --------TSERPGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQGIANLIMNAKRCIKK 290
                    +ERPGC+F+ +QR+ +YFYKG++YG+VGFGCG++GQGIANLIM AKR I K
Sbjct: 292 NALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINK 351

[Close]

BLAST of Sed0001093 vs. TAIR 10
Match: AT2G37860.2 (Protein of unknown function (DUF3411) )

HSP 1 Score: 208.4 bits (529), Expect = 7.9e-54
Identity = 122/236 (51.69%), Postives = 148/236 (62.71%), Query Frame = 0


Query: 51  GDGSIGA-GNGFGGGGGGNGNGDGE-EEEEEEEFGSILKFDDVIKEADACGVRLPQKMLE 110
           GDG  G+ GNG GGGGG  G GDGE E+ EE+EFG ILKF++V+KE +A G  LP  MLE
Sbjct: 112 GDGFNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLE 171

Query: 111 AAKATGIQEVFLGRYLDLQGLGLLLGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCA 170
           AAK  GI++V L RYLDLQ    LLGF + S +M R+RMLADPSFLFK+G EIVIDSCCA
Sbjct: 172 AAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCA 231

Query: 171 TFAEVQKRGENFWAA--------------------------------------------- 230
           T AEVQKRG++FWA                                              
Sbjct: 232 TVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAY 291

Query: 231 --------TSERPGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQGIANLIMNAKR 232
                    +ERPGC+F+ +QR+ +YFYKG++YG+VGFGCG++GQGIANLIM AKR
Sbjct: 292 NALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKR 347

[Close]

BLAST of Sed0001093 vs. TAIR 10
Match: AT2G37860.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 208.4 bits (529), Expect = 7.9e-54
Identity = 122/236 (51.69%), Postives = 148/236 (62.71%), Query Frame = 0


Query: 51  GDGSIGA-GNGFGGGGGGNGNGDGE-EEEEEEEFGSILKFDDVIKEADACGVRLPQKMLE 110
           GDG  G+ GNG GGGGG  G GDGE E+ EE+EFG ILKF++V+KE +A G  LP  MLE
Sbjct: 112 GDGFNGSDGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLE 171

Query: 111 AAKATGIQEVFLGRYLDLQGLGLLLGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCA 170
           AAK  GI++V L RYLDLQ    LLGF + S +M R+RMLADPSFLFK+G EIVIDSCCA
Sbjct: 172 AAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCA 231

Query: 171 TFAEVQKRGENFWAA--------------------------------------------- 230
           T AEVQKRG++FWA                                              
Sbjct: 232 TVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAY 291

Query: 231 --------TSERPGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQGIANLIMNAKR 232
                    +ERPGC+F+ +QR+ +YFYKG++YG+VGFGCG++GQGIANLIM AKR
Sbjct: 292 NALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKR 347

[Close]

BLAST of Sed0001093 vs. TAIR 10
Match: AT3G08640.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 55.5 bits (132), Expect = 8.5e-08
Identity = 74/255 (29.02%), Postives = 103/255 (40.39%), Query Frame = 0


Query: 50  GGDGSIGAGNGFGGGGGGNGNGDGEEEEEEEEFGSILKFDDVIKEADACGVRLPQKMLEA 109
           G  G+ G G+G GGGGGG G   GE  EE   +G I  F    +   A   + P K+L  
Sbjct: 66  GSTGNNGGGSGSGGGGGGFGGSGGEASEESSPWGPIGLFIQGWRSRVAADPQFPFKVL-M 125

Query: 110 AKATGIQEVFLGRYLDLQGLGL-LLGFLMSSCSMFRDRMLADPSFLFKVGTEIVIDSCCA 169
            +  G+    LG        GL  L F+ S+  +           +       ++    A
Sbjct: 126 EEIVGLSACVLGDMASRPNFGLNELDFVFSTLVV---------GSILNFVLMYMLAPTAA 185

Query: 170 TFAEVQKRGENFWAATSER--PGCKFTVEQRIVSYFYKGVLYGSVGFGCGLIGQGIAN-L 229
           T    Q     F    S        FTV  R  +  YKG+++ SVG   GL+G  I+N L
Sbjct: 186 TLGSSQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGL 245

Query: 230 IMNAKRCIKKSNEDVHVPPLIQSASLW-------VNAIEQVVEASP--LAKKIPPVAMAF 289
           IM  K+           PP + ++  W        NA  Q +      LAK +PP+    
Sbjct: 246 IMLRKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKVLPPLVFKT 305

Query: 290 TIGV-RFANNTYGGM 291
           ++ V R ANN  GGM
Sbjct: 306 SVIVLRCANNVAGGM 310

The following BLAST results are available for this feature:

BLAST of Sed0001093 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140542.1	5.9e-104	58.09	protein RETICULATA-RELATED 1, chloroplastic [Momordica charantia]	[more]
XP_022996050.1	1.7e-103	58.60	protein RETICULATA-RELATED 1, chloroplastic [Cucurbita maxima]	[more]
XP_022958431.1	1.7e-103	58.85	protein RETICULATA-RELATED 1, chloroplastic-like [Cucurbita moschata]	[more]
KAG6606017.1	1.1e-102	57.86	Protein RETICULATA-RELATED 1, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
XP_023534638.1	1.9e-102	58.38	protein RETICULATA-RELATED 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0001093 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGP9	2.8e-80	53.58	Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
B9DFK5	2.1e-75	52.75	Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=...	[more]
Q9C9Z2	1.2e-06	29.02	Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9C9Z3	6.6e-05	27.97	Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]

BLAST of Sed0001093 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHA0	2.9e-104	58.09	protein RETICULATA-RELATED 1, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1K5M0	8.4e-104	58.60	protein RETICULATA-RELATED 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1H219	8.4e-104	58.85	protein RETICULATA-RELATED 1, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0KBM1	2.7e-102	56.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G150470 PE=3 SV=1	[more]
A0A5D3BCI2	6.6e-101	57.28	Protein RETICULATA-RELATED 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Sed0001093 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22790.1	2.0e-81	53.58	reticulata-related 1	[more]
AT2G37860.3	1.5e-76	52.75	Protein of unknown function (DUF3411)	[more]
AT2G37860.2	7.9e-54	51.69	Protein of unknown function (DUF3411)	[more]
AT2G37860.1	7.9e-54	51.69	Protein of unknown function (DUF3411)	[more]
AT3G08640.1	8.5e-08	29.02	Protein of unknown function (DUF3411)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021825	Protein RETICULATA-related	PFAM	PF11891	RETICULATA-like	coord: 186..252 e-value: 1.7E-15 score: 57.3 coord: 145..182 e-value: 2.7E-11 score: 43.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..52
None	No IPR available	PANTHER	PTHR31038:SF18	PROTEIN RETICULATA-RELATED 1, CHLOROPLASTIC	coord: 185..290
None	No IPR available	PANTHER	PTHR31038	EXPRESSED PROTEIN-RELATED	coord: 39..182
None	No IPR available	PANTHER	PTHR31038	EXPRESSED PROTEIN-RELATED	coord: 185..290
None	No IPR available	PANTHER	PTHR31038:SF18	PROTEIN RETICULATA-RELATED 1, CHLOROPLASTIC	coord: 39..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001093.1	Sed0001093.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane