Sed0001088 (gene) Chayote v1

Overview
NameSed0001088
Typegene
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L20, chloroplastic
LocationContig00297: 126162 .. 126509 (+)
RNA-Seq ExpressionSed0001088
SyntenySed0001088
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGATATAATAAGGTAGACTACAGTTATAGTAGATTCATACAGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGAATTGTCTTTATATGATTTCCAATGAGATCATAAAATAA

mRNA sequence

ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGATATAATAAGGTAGACTACAGTTATAGTAGATTCATACAGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGAATTGTCTTTATATGATTTCCAATGAGATCATAAAATAA

Coding sequence (CDS)

ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGATATAATAAGGTAGACTACAGTTATAGTAGATTCATACAGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGAATTGTCTTTATATGATTTCCAATGAGATCATAAAATAA

Protein sequence

MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNKVDYSYSRFIQYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Homology
[Close]
BLAST of Sed0001088 vs. NCBI nr
Match: YP_009560858.1 (ribosomal protein L20 [Trichosanthes kirilowii] >YP_009751929.1 ribosomal protein L20 [Cyclanthera pedata] >YP_009752435.1 ribosomal protein L20 [Trichosanthes tricuspidata] >YP_009753643.1 ribosomal protein L20 [Trichosanthes wallichiana] >YP_009753728.1 ribosomal protein L20 [Trichosanthes nervifolia] >YP_009945440.1 ribosomal protein L20 [Sechium edule] >QAB33211.1 ribosomal protein L20 [Trichosanthes kirilowii] >QIT04156.1 ribosomal protein L20 [Sechium edule] >QIT04662.1 ribosomal protein L20 [Trichosanthes wallichiana] >QIT04747.1 ribosomal protein L20 [Cyclanthera pedata] >QIT04831.1 ribosomal protein L20 [Trichosanthes tricuspidata])

HSP 1 Score: 209.1 bits (531), Expect = 2.0e-50
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. NCBI nr
Match: YP_009752266.1 (ribosomal protein L20 [Trichosanthes baviensis] >YP_009753197.1 ribosomal protein L20 [Trichosanthes truncata] >YP_009753812.1 ribosomal protein L20 [Trichosanthes pilosa] >YP_009753897.1 ribosomal protein L20 [Trichosanthes lobata] >QJD26494.1 ribosomal protein L20 [Trichosanthes kirilowii var. japonica] >QJD26668.1 ribosomal protein L20 [Trichosanthes rosthornii] >QIT04240.1 ribosomal protein L20 [Trichosanthes baviensis] >QIT05676.1 ribosomal protein L20 [Trichosanthes pilosa] >QIT05845.1 ribosomal protein L20 [Trichosanthes lobata])

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-50
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIRYNK+DYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRYNKIDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. NCBI nr
Match: YP_009752604.1 (ribosomal protein L20 [Trichosanthes homophylla] >QIT05000.1 ribosomal protein L20 [Trichosanthes homophylla] >QIT05085.1 ribosomal protein L20 [Trichosanthes kirilowii] >QJD26319.1 ribosomal protein L20 [Trichosanthes kirilowii] >QJD26406.1 ribosomal protein L20 [Trichosanthes kirilowii])

HSP 1 Score: 207.2 bits (526), Expect = 7.4e-50
Identity = 112/117 (95.73%), Postives = 113/117 (96.58%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIRYNK+DYSYSRFI   YKRQLLLNRKILAQI ILNRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRYNKIDYSYSRFIHNLYKRQLLLNRKILAQITILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. NCBI nr
Match: YP_009447473.1 (ribosomal protein L20 [Cucurbita maxima] >YP_009447558.1 ribosomal protein L20 [Cucurbita moschata] >YP_009505103.1 ribosomal protein L20 [Cucurbita pepo] >YP_009753112.1 ribosomal protein L20 [Corallocarpus boehmii] >YP_009753281.1 ribosomal protein L20 [Nothoalsomitra suberosa] >QKX48496.1 ribosomal protein L20 [Luffa acutangula] >QWV60863.1 ribosomal protein L20 [Cucurbita ficifolia] >ATY69909.1 ribosomal protein L20 [Cucurbita maxima] >ATY69992.1 ribosomal protein L20 [Cucurbita moschata] >AWX90387.1 ribosomal protein L20 [Cucurbita pepo])

HSP 1 Score: 207.2 bits (526), Expect = 7.4e-50
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WI RINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. NCBI nr
Match: YP_009751676.1 (ribosomal protein L20 [Hodgsonia heteroclita] >QIT04409.1 ribosomal protein L20 [Hodgsonia heteroclita])

HSP 1 Score: 206.8 bits (525), Expect = 9.7e-50
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKI LFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKISLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. ExPASy Swiss-Prot
Match: Q4VZJ4 (50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-51
Identity = 111/117 (94.87%), Postives = 111/117 (94.87%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WI RINAVIR N VDYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNNVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. ExPASy Swiss-Prot
Match: Q09G23 (50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.7e-47
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRI+RGYIARRRRTKIRLFAS+FRGAHSRLTRT TQQK+RAL SA+RDRGRQKRNFR+L
Sbjct: 1   MTRIRRGYIARRRRTKIRLFASTFRGAHSRLTRTTTQQKMRALVSAHRDRGRQKRNFRRL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIR NKV YSYSR I   YKRQLLLNRKILAQIAI NRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRENKVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. ExPASy Swiss-Prot
Match: Q09WZ4 (50S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-45
Identity = 102/117 (87.18%), Postives = 108/117 (92.31%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSF+GA SRLTRTITQQKIRAL SA++DRGRQKR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFQGARSRLTRTITQQKIRALVSAHQDRGRQKRDFRRL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIR NKV YSYS  I   YKRQLLLNRKILAQIAILNRNCLYMISNEI+K
Sbjct: 61  WITRINAVIRANKVYYSYSTLIHHLYKRQLLLNRKILAQIAILNRNCLYMISNEILK 117

[Close]
BLAST of Sed0001088 vs. ExPASy Swiss-Prot
Match: B1NWH3 (50S ribosomal protein L20, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-45
Identity = 100/117 (85.47%), Postives = 107/117 (91.45%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRI+RGYIARRRRTKIRLFASSFRGAHSRLTRTI QQKIRAL SA+RDR RQKRNFR+L
Sbjct: 1   MTRIRRGYIARRRRTKIRLFASSFRGAHSRLTRTIIQQKIRALVSAHRDRDRQKRNFRRL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           W+TRINAVIR + V YSYSR I   YKRQLLLNRKILAQIAILNRNCLYMISN+I+K
Sbjct: 61  WVTRINAVIRESTVSYSYSRLINNLYKRQLLLNRKILAQIAILNRNCLYMISNDILK 117

[Close]
BLAST of Sed0001088 vs. ExPASy Swiss-Prot
Match: Q7FNS5 (50S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.6e-45
Identity = 102/117 (87.18%), Postives = 106/117 (90.60%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSAHRDRDRKKRDFRRL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIR   V YSYSR I   YKRQLLLNRKILAQIAI NRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRERGVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. ExPASy TrEMBL
Match: A0A6H0ERB9 (50S ribosomal protein L20, chloroplastic OS=Trichosanthes tricuspidata OX=654837 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.5e-51
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. ExPASy TrEMBL
Match: A0A6H0ESL1 (50S ribosomal protein L20, chloroplastic OS=Cyclanthera pedata OX=198836 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.5e-51
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. ExPASy TrEMBL
Match: A0A410HFA7 (50S ribosomal protein L20, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.5e-51
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. ExPASy TrEMBL
Match: A0A6H0ES10 (50S ribosomal protein L20, chloroplastic OS=Sechium edule OX=184140 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.5e-51
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. ExPASy TrEMBL
Match: A0A6H0EQN9 (50S ribosomal protein L20, chloroplastic OS=Trichosanthes wallichiana OX=1144464 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.5e-51
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVIRYNKVDYSYSRFI   YKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Sed0001088 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 168.7 bits (426), Expect = 2.7e-42
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRL 60

Query: 61  WITRINAVIRYNKVDYSYSRFIQ--YKRQLLLNRKILAQIAILNRNCLYMISNEIIK 116
           WITRINAVI    V YSY+ FI   YK+QLLLNRKILAQIA+LNR+CLY ISN+I K
Sbjct: 61  WITRINAVIHEMGVFYSYNEFIHNLYKKQLLLNRKILAQIALLNRSCLYTISNDIKK 117

[Close]
BLAST of Sed0001088 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 48.9 bits (115), Expect = 3.2e-06
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 0 

Query: 14  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWITRINAVIRYNK 73
           + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + 
Sbjct: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQHG 62

Query: 74  VDYSYSRFIQYKRQLLLNRKILAQIAI 101
           V+Y        K  + LNRK+L+++++
Sbjct: 63  VNYGNFIHGLMKENIQLNRKVLSELSM 89

The following BLAST results are available for this feature:
BLAST of Sed0001088 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009560858.12.0e-5097.44ribosomal protein L20 [Trichosanthes kirilowii] >YP_009751929.1 ribosomal protei... [more]
YP_009752266.12.6e-5096.58ribosomal protein L20 [Trichosanthes baviensis] >YP_009753197.1 ribosomal protei... [more]
YP_009752604.17.4e-5095.73ribosomal protein L20 [Trichosanthes homophylla] >QIT05000.1 ribosomal protein L... [more]
YP_009447473.17.4e-5096.58ribosomal protein L20 [Cucurbita maxima] >YP_009447558.1 ribosomal protein L20 [... [more]
YP_009751676.19.7e-5096.58ribosomal protein L20 [Hodgsonia heteroclita] >QIT04409.1 ribosomal protein L20 ... [more]
BLAST of Sed0001088 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZJ44.1e-5194.8750S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=... [more]
Q09G234.7e-4788.0350S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl... [more]
Q09WZ41.2e-4587.1850S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3... [more]
B1NWH31.5e-4585.4750S ribosomal protein L20, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl20 P... [more]
Q7FNS52.6e-4587.1850S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 ... [more]
BLAST of Sed0001088 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6H0ERB99.5e-5197.4450S ribosomal protein L20, chloroplastic OS=Trichosanthes tricuspidata OX=654837... [more]
A0A6H0ESL19.5e-5197.4450S ribosomal protein L20, chloroplastic OS=Cyclanthera pedata OX=198836 GN=rpl2... [more]
A0A410HFA79.5e-5197.4450S ribosomal protein L20, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r... [more]
A0A6H0ES109.5e-5197.4450S ribosomal protein L20, chloroplastic OS=Sechium edule OX=184140 GN=rpl20 PE=... [more]
A0A6H0EQN99.5e-5197.4450S ribosomal protein L20, chloroplastic OS=Trichosanthes wallichiana OX=1144464... [more]
BLAST of Sed0001088 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00660.12.7e-4278.63ribosomal protein L20 [more]
AT1G16740.13.2e-0635.63Ribosomal protein L20 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 75..101
score: 39.62
coord: 12..41
score: 42.32
coord: 42..71
score: 57.88
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 1..111
e-value: 9.9E-25
score: 85.0
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..106
e-value: 2.7E-29
score: 101.4
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..113
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 54..70
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 2..115
score: 22.507704
IPR005813Ribosomal protein L20CDDcd07026Ribosomal_L20coord: 6..111
e-value: 1.09416E-33
score: 111.037
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20Ribosomal protein L20coord: 56..115
e-value: 9.6E-17
score: 62.3
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 2..113
NoneNo IPR availableGENE3D6.10.160.10coord: 3..55
e-value: 3.0E-12
score: 48.5
NoneNo IPR availablePANTHERPTHR10986:SF1239S RIBOSOMAL PROTEIN L20, MITOCHONDRIALcoord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001088.1Sed0001088.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome