Sed0001082 (gene) Chayote v1

Overview
NameSed0001082
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTransducin/WD40 repeat-like superfamily protein
LocationLG14: 21177619 .. 21178229 (-)
RNA-Seq ExpressionSed0001082
SyntenySed0001082
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATTAATTCAAACCAAATGACAGAAAAAACCAGAAGAACCCCCAGAAAGGCAAAGGCCACTCATCTCTGCTTCCCACAGCTCAGAGCCGCCGGCAAGGTCCCGTCGCCGGCGACTCTTCTCGACCGCCTCCGCGAGGCCGTTTTTCGGTTCATCATGATATGCGCTCTCTCCAAAGCCCCAAGTCACCATCATCACGATGGCGCCGGAGATGGTTTCTCCGACGACGCCGTTAGGCGGCGAAACACTGACCACCACCACAGCGAAGCCGTCGCCGATTGCATTGAGTTCATTAAGACGAAGGCGTACTCGGACGACGTGACAGTTCACGGCGGCGGATCGATGGACGCCGATGCTGACGTGGCCATGCCGGAGCCGGTGTCTGGTTAACTAACGGCGGTGCAAGGGGGTCTAGACTAGTTGCTCCTCCAATTTGTGTTGAAATTAGTGTTTAGTTTTAGGATTTTTATAAATTAATTATGGGAAAGAAATTCGGAAATTCTACGTGGAAATGTGCCGATTTCGTTATATATATGTGGGGTATTTCCTTTTGTTATTTTAGATTGTCTCCTACTATCTAATTATCAAGTGTTATTGGGTCATATAATAG

mRNA sequence

ATTCATTAATTCAAACCAAATGACAGAAAAAACCAGAAGAACCCCCAGAAAGGCAAAGGCCACTCATCTCTGCTTCCCACAGCTCAGAGCCGCCGGCAAGGTCCCGTCGCCGGCGACTCTTCTCGACCGCCTCCGCGAGGCCGTTTTTCGGTTCATCATGATATGCGCTCTCTCCAAAGCCCCAAGTCACCATCATCACGATGGCGCCGGAGATGGTTTCTCCGACGACGCCGTTAGGCGGCGAAACACTGACCACCACCACAGCGAAGCCGTCGCCGATTGCATTGAGTTCATTAAGACGAAGGCGTACTCGGACGACGTGACAGTTCACGGCGGCGGATCGATGGACGCCGATGCTGACGTGGCCATGCCGGAGCCGGTGTCTGGTTAACTAACGGCGGTGCAAGGGGGTCTAGACTAGTTGCTCCTCCAATTTGTGTTGAAATTAGTGTTTAGTTTTAGGATTTTTATAAATTAATTATGGGAAAGAAATTCGGAAATTCTACGTGGAAATGTGCCGATTTCGTTATATATATGTGGGGTATTTCCTTTTGTTATTTTAGATTGTCTCCTACTATCTAATTATCAAGTGTTATTGGGTCATATAATAG

Coding sequence (CDS)

ATGACAGAAAAAACCAGAAGAACCCCCAGAAAGGCAAAGGCCACTCATCTCTGCTTCCCACAGCTCAGAGCCGCCGGCAAGGTCCCGTCGCCGGCGACTCTTCTCGACCGCCTCCGCGAGGCCGTTTTTCGGTTCATCATGATATGCGCTCTCTCCAAAGCCCCAAGTCACCATCATCACGATGGCGCCGGAGATGGTTTCTCCGACGACGCCGTTAGGCGGCGAAACACTGACCACCACCACAGCGAAGCCGTCGCCGATTGCATTGAGTTCATTAAGACGAAGGCGTACTCGGACGACGTGACAGTTCACGGCGGCGGATCGATGGACGCCGATGCTGACGTGGCCATGCCGGAGCCGGTGTCTGGTTAA

Protein sequence

MTEKTRRTPRKAKATHLCFPQLRAAGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTKAYSDDVTVHGGGSMDADADVAMPEPVSG
Homology
BLAST of Sed0001082 vs. NCBI nr
Match: KGN49339.2 (hypothetical protein Csa_003207 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 8.9e-25
Identity = 76/133 (57.14%), Postives = 87/133 (65.41%), Query Frame = 0

Query: 1   MTEKTRRTPRKAK-ATHLCFPQLRAAG-----KVPSPATLLDRLREAVFRFIMICALSKA 60
           M EK+RR PRK K   +LC  + R+       K PSP TL +RLREAVFRFIM+CALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  PSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCIEFIKTKAYSDDVTVHGGGSM 120
              +HH  AG  F DD V RR     N DHHHSEAVADCIEFIK KAYSDD  +   GS+
Sbjct: 61  T--NHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSV 120

Query: 121 -DADADVAMPEPV 122
            DAD D+ +  PV
Sbjct: 121 DDADDDMTVSVPV 131

BLAST of Sed0001082 vs. NCBI nr
Match: KAG6603914.1 (hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-24
Identity = 74/125 (59.20%), Postives = 85/125 (68.00%), Query Frame = 0

Query: 1   MTEKTRRTPRKAKATHLCFPQLRAAGKVPSPATLLDRLREAVFRFIMICALSKAPSHHHH 60
           M EKTRR P KAK   L    ++ + K P   TL +RLREAVFRFIM+CALSKA +HH  
Sbjct: 1   MAEKTRRVPGKAK---LRGDDMKNS-KAPPAMTLFERLREAVFRFIMLCALSKATNHH-- 60

Query: 61  DGAGDGFSDDAVRRR----NTDHHHSEAVADCIEFIKTKAYSDDVTVHGGGSMDADADVA 120
             AG  F DD VRRR    N DHHHSEAVADCIEFIK KAYSDD  +   GS+DAD D+A
Sbjct: 61  -SAGAVFQDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVDADDDMA 118

Query: 121 MPEPV 122
           +  P+
Sbjct: 121 VSVPL 118

BLAST of Sed0001082 vs. NCBI nr
Match: KAA0025678.1 (Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK12553.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-21
Identity = 67/111 (60.36%), Postives = 74/111 (66.67%), Query Frame = 0

Query: 1   MTEKTRRTPRKAK-ATHLCFPQLRA-----AGKVPSPATLLDRLREAVFRFIMICALSKA 60
           M EK+RR PRK K   +LC  + R+       K PS  TL +RLREAVFRFIM+CALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  PSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCIEFIKTKAYSDD 101
              +HH  AG  F DD V RR     N DHHHSEAVADCIEFIK KAYSDD
Sbjct: 61  T--NHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD 109

BLAST of Sed0001082 vs. NCBI nr
Match: XP_016699008.1 (uncharacterized protein LOC107914579 [Gossypium hirsutum] >KAG4125348.1 hypothetical protein ERO13_D10G089800v2 [Gossypium hirsutum])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 56/122 (45.90%), Postives = 74/122 (60.66%), Query Frame = 0

Query: 1   MTEKTRRTPRKAKATHLCFPQLRA--AGKVPSPATLLDRLREAVFRFIMICALSKAPSHH 60
           M  KTR TP++ K ++LC P+ +     K  SP  LLDR REAVFR IM+ AL+KA + H
Sbjct: 1   MENKTRGTPKQMKTSNLCMPRWKGNNKNKRVSPMNLLDRFREAVFRLIMLSALTKAAATH 60

Query: 61  HHDGAGDGFSDDAVRR--RNTDHHHSEAVADCIEFIKTKAYSDDVTVHGGGSMDADADVA 119
            H       +  A RR  +  D HHSEAVADCIEFIK K+  ++  V GG S  ++  +A
Sbjct: 61  PHTTPA---ASGAPRRYYQPADTHHSEAVADCIEFIKKKSSREENRVSGGSSCTSEVVMA 119

BLAST of Sed0001082 vs. NCBI nr
Match: MBA0860583.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-15
Identity = 58/125 (46.40%), Postives = 75/125 (60.00%), Query Frame = 0

Query: 1   MTEKTRRTPRKAKATHLCFPQLRAAGKVP---SPATLLDRLREAVFRFIMICALSKAPSH 60
           M +KTR +P+  K++ LC P  ++  K+    SP TLL+R REAVFR IM+ ALSKA SH
Sbjct: 1   MEKKTRGSPKIMKSSILCMPGFKSNNKINKRLSPVTLLERFREAVFRLIMLSALSKA-SH 60

Query: 61  HHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTKAYSDDVTVHGGGSMD-ADADVA 120
           HHH       S    R    D HH+EAVADCIEFIK K+  +        +MD A +++ 
Sbjct: 61  HHHHHHQSSSSTVPQRYYPADAHHNEAVADCIEFIKKKSSRESRA--SSSNMDAATSEIV 120

Query: 121 MPEPV 122
           MP PV
Sbjct: 121 MPVPV 122

BLAST of Sed0001082 vs. ExPASy TrEMBL
Match: A0A0A0KGN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.3e-25
Identity = 76/133 (57.14%), Postives = 87/133 (65.41%), Query Frame = 0

Query: 1   MTEKTRRTPRKAK-ATHLCFPQLRAAG-----KVPSPATLLDRLREAVFRFIMICALSKA 60
           M EK+RR PRK K   +LC  + R+       K PSP TL +RLREAVFRFIM+CALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  PSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCIEFIKTKAYSDDVTVHGGGSM 120
              +HH  AG  F DD V RR     N DHHHSEAVADCIEFIK KAYSDD  +   GS+
Sbjct: 61  T--NHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSV 120

Query: 121 -DADADVAMPEPV 122
            DAD D+ +  PV
Sbjct: 121 DDADDDMTVSVPV 131

BLAST of Sed0001082 vs. ExPASy TrEMBL
Match: A0A5A7SHP0 (Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001350 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 67/111 (60.36%), Postives = 74/111 (66.67%), Query Frame = 0

Query: 1   MTEKTRRTPRKAK-ATHLCFPQLRA-----AGKVPSPATLLDRLREAVFRFIMICALSKA 60
           M EK+RR PRK K   +LC  + R+       K PS  TL +RLREAVFRFIM+CALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  PSHHHHDGAGDGFSDDAVRRR-----NTDHHHSEAVADCIEFIKTKAYSDD 101
              +HH  AG  F DD V RR     N DHHHSEAVADCIEFIK KAYSDD
Sbjct: 61  T--NHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD 109

BLAST of Sed0001082 vs. ExPASy TrEMBL
Match: A0A1U8KDI1 (uncharacterized protein LOC107914579 OS=Gossypium hirsutum OX=3635 GN=LOC107914579 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 56/122 (45.90%), Postives = 74/122 (60.66%), Query Frame = 0

Query: 1   MTEKTRRTPRKAKATHLCFPQLRA--AGKVPSPATLLDRLREAVFRFIMICALSKAPSHH 60
           M  KTR TP++ K ++LC P+ +     K  SP  LLDR REAVFR IM+ AL+KA + H
Sbjct: 1   MENKTRGTPKQMKTSNLCMPRWKGNNKNKRVSPMNLLDRFREAVFRLIMLSALTKAAATH 60

Query: 61  HHDGAGDGFSDDAVRR--RNTDHHHSEAVADCIEFIKTKAYSDDVTVHGGGSMDADADVA 119
            H       +  A RR  +  D HHSEAVADCIEFIK K+  ++  V GG S  ++  +A
Sbjct: 61  PHTTPA---ASGAPRRYYQPADTHHSEAVADCIEFIKKKSSREENRVSGGSSCTSEVVMA 119

BLAST of Sed0001082 vs. ExPASy TrEMBL
Match: A0A6J0ZL23 (LOW QUALITY PROTEIN: uncharacterized protein LOC110409788 OS=Herrania umbratica OX=108875 GN=LOC110409788 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-15
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 0

Query: 1   MTEKTRRTPRKAKATHLCFPQLRAAGKVP--SPATLLDRLREAVFRFIMICALSKAPSHH 60
           M +KTR  P+K K++ LC P+ + + K    SP TLL+R+REAVFR IM+ AL+K  SHH
Sbjct: 255 MEKKTRGNPKKMKSSTLCMPRFKGSNKNKRLSPMTLLERIREAVFRLIMLSALTKT-SHH 314

Query: 61  HHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTKA--YSDDVTVHGGGSMDADADVA 120
           H      G S    +    D HHSEAVADCIEFIK KA    +  +     +MDA  +V 
Sbjct: 315 H-----TGSSTAPRKYYPADAHHSEAVADCIEFIKKKASRLENRDSSASSSNMDATGEVV 372

BLAST of Sed0001082 vs. ExPASy TrEMBL
Match: A0A5C7HUV3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-15
Identity = 61/130 (46.92%), Postives = 74/130 (56.92%), Query Frame = 0

Query: 3   EKTRRTPRKAKATHLCFPQLRAAG-------KVPSPATLLDRLREAVFRFIMICALSKAP 62
           EK R +PRK K T+LC P+L  AG       K  +P TLL+R REAVFR IM+ ALSKA 
Sbjct: 2   EKPRGSPRKMK-TNLCIPRLIKAGNNGRNKNKNLTPVTLLERFREAVFRLIMLSALSKAT 61

Query: 63  SHHHHDGAGDGFSDDAVRRRNTDHHHSEAVADCIEFIKTKAYSDD----VTVHGGGSMDA 122
           + HHH   G      +      D HHSEAVADCIEFIK KA +DD           S+D 
Sbjct: 62  NDHHHHTVGSSRVSRSY-YSPADPHHSEAVADCIEFIKKKAVADDNENGRDSSASTSIDD 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49339.28.9e-2557.14hypothetical protein Csa_003207 [Cucumis sativus][more]
KAG6603914.11.2e-2459.20hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0025678.12.7e-2160.36Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK1... [more]
XP_016699008.16.4e-1545.90uncharacterized protein LOC107914579 [Gossypium hirsutum] >KAG4125348.1 hypothet... [more]
MBA0860583.18.3e-1546.40hypothetical protein [Gossypium schwendimanii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGN34.3e-2557.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1[more]
A0A5A7SHP01.3e-2160.36Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A1U8KDI13.1e-1545.90uncharacterized protein LOC107914579 OS=Gossypium hirsutum OX=3635 GN=LOC1079145... [more]
A0A6J0ZL234.0e-1546.77LOW QUALITY PROTEIN: uncharacterized protein LOC110409788 OS=Herrania umbratica ... [more]
A0A5C7HUV34.0e-1546.92Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..79
NoneNo IPR availablePANTHERPTHR35111F10A5.9-RELATEDcoord: 10..105
NoneNo IPR availablePANTHERPTHR35111:SF1EXPRESSED PROTEINcoord: 10..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001082.1Sed0001082.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0006955 immune response
biological_process GO:0012501 programmed cell death