Sed0000963 (gene) Chayote v1

Overview


Name	Sed0000963
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S15, chloroplastic
Location	LG13: 18711120 .. 18711392 (+)
RNA-Seq Expression	Sed0000963
Synteny	Sed0000963

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAAAATTCATTCAGCTCTGTTATTTCGCAAGAAGAAAAAAAAAAAAATGGAGGATCTGTTGAATTTCAAGTATTCAATTTCACCAATAAGATCCGAAGACTTACTTCACATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAAAGGTCTACGTAAAATTCTCGGAAAACGCCAACGATTACTTTCTTATTTATCAAAGAAAAATAAAATGCGTTATAAAGAATTAATTAATCAATTGGATATTCGGGAGTCAAAAACTCAGTAA

mRNA sequence

ATGTTAAAAAATTCATTCAGCTCTGTTATTTCGCAAGAAGAAAAAAAAAAAAATGGAGGATCTGTTGAATTTCAAGTATTCAATTTCACCAATAAGATCCGAAGACTTACTTCACATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAAAGGTCTACGTAAAATTCTCGGAAAACGCCAACGATTACTTTCTTATTTATCAAAGAAAAATAAAATGCGTTATAAAGAATTAATTAATCAATTGGATATTCGGGAGTCAAAAACTCAGTAA

Coding sequence (CDS)

ATGTTAAAAAATTCATTCAGCTCTGTTATTTCGCAAGAAGAAAAAAAAAAAAATGGAGGATCTGTTGAATTTCAAGTATTCAATTTCACCAATAAGATCCGAAGACTTACTTCACATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAAAGGTCTACGTAAAATTCTCGGAAAACGCCAACGATTACTTTCTTATTTATCAAAGAAAAATAAAATGCGTTATAAAGAATTAATTAATCAATTGGATATTCGGGAGTCAAAAACTCAGTAA

Protein sequence

MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ

Homology

[Close]

BLAST of Sed0000963 vs. NCBI nr
Match: YP_009945461.1 (ribosomal protein S15 [Sechium edule] >QIT04189.1 ribosomal protein S15 [Sechium edule] >QOE55991.1 ribosomal protein S15 [Sechium edule])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR
Sbjct: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. NCBI nr
Match: YP_009751962.1 (ribosomal protein S15 [Cyclanthera pedata] >QIT04780.1 ribosomal protein S15 [Cyclanthera pedata] >QWQ50138.1 ribosomal protein S15 [Cyclanthera pedata])

HSP 1 Score: 166.8 bits (421), Expect = 8.7e-38
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          MLKNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKR
Sbjct: 1  MLKNSFSSVISQEEKKQNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. NCBI nr
Match: YP_009752205.1 (ribosomal protein S15 [Linnaeosicyos amara] >YP_009752220.1 ribosomal protein S15 [Linnaeosicyos amara] >YP_009753304.1 ribosomal protein S15 [Nothoalsomitra suberosa] >QIT04106.1 ribosomal protein S15 [Luffa aegyptiaca] >QKX48532.1 ribosomal protein S15 [Luffa acutangula] >QIT05615.1 ribosomal protein S15 [Linnaeosicyos amara] >QIT05630.1 ribosomal protein S15 [Linnaeosicyos amara] >QIT06376.1 ribosomal protein S15 [Nothoalsomitra suberosa])

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 87/90 (96.67%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKR
Sbjct: 1  MVKNSFSSVISQEEKKENGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. NCBI nr
Match: YP_009752722.1 (ribosomal protein S15 [Ampelosycios humblotii] >QIT05203.1 ribosomal protein S15 [Ampelosycios humblotii])

HSP 1 Score: 163.7 bits (413), Expect = 7.4e-37
Identity = 86/90 (95.56%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KNSFSSVISQEEKK+NGGSVEFQVF+FTNKIRRLTSHLELHKKDYLSQ+GLRKILGKR
Sbjct: 1  MVKNSFSSVISQEEKKENGGSVEFQVFSFTNKIRRLTSHLELHKKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. NCBI nr
Match: YP_009560892.1 (ribosomal protein S15 [Trichosanthes kirilowii] >YP_009752299.1 ribosomal protein S15 [Trichosanthes baviensis] >YP_009752468.1 ribosomal protein S15 [Trichosanthes tricuspidata] >YP_009752628.1 ribosomal protein S15 [Trichosanthes homophylla] >YP_009753230.1 ribosomal protein S15 [Trichosanthes truncata] >YP_009753667.1 ribosomal protein S15 [Trichosanthes wallichiana] >YP_009753761.1 ribosomal protein S15 [Trichosanthes nervifolia] >YP_009753836.1 ribosomal protein S15 [Trichosanthes pilosa] >QJD26528.1 ribosomal protein S15 [Trichosanthes kirilowii var. japonica] >QJD26702.1 ribosomal protein S15 [Trichosanthes rosthornii] >QAB33243.1 ribosomal protein S15 [Trichosanthes kirilowii] >QIT04273.1 ribosomal protein S15 [Trichosanthes baviensis] >QIT04686.1 ribosomal protein S15 [Trichosanthes wallichiana])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KNSFSSVISQEEKK+NGGSVEFQV NFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKR
Sbjct: 1  MVKNSFSSVISQEEKKENGGSVEFQVVNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. ExPASy Swiss-Prot
Match: Q4VZL1 (30S ribosomal protein S15, chloroplastic OS=Cucumis sativus OX=3659 GN=rps15 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.3e-39
Identity = 85/90 (94.44%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KNSFSSVISQEEKK+NGGSVEFQV +FTNKIRRLTSHLELHKKDYLSQ+GLRKILGKR
Sbjct: 1  MVKNSFSSVISQEEKKENGGSVEFQVVSFTNKIRRLTSHLELHKKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. ExPASy Swiss-Prot
Match: Q09FY9 (30S ribosomal protein S15, chloroplastic OS=Platanus occidentalis OX=4403 GN=rps15 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.1e-34
Identity = 75/88 (85.23%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KN+F SVISQEEK++N GS EFQVFNFTNKIRRLTSHLELH+KDYLSQ+GLRKILGKR
Sbjct: 1  MVKNAFISVISQEEKEENKGSAEFQVFNFTNKIRRLTSHLELHRKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESK 89
          QRLL+YLSKKNK+RYKELI+QLDIRE K
Sbjct: 61 QRLLAYLSKKNKVRYKELISQLDIREPK 88

[Close]

BLAST of Sed0000963 vs. ExPASy Swiss-Prot
Match: Q49KU1 (30S ribosomal protein S15, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps15 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-34
Identity = 77/91 (84.62%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MLKNSFSSVISQ-EEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGK 60
          M+KNSF SVISQ EEK++N GS+EFQVF FTNKIRRLTSHLELH+KDYLSQ+GLRKILGK
Sbjct: 1  MVKNSFISVISQEEEKEENRGSIEFQVFRFTNKIRRLTSHLELHRKDYLSQRGLRKILGK 60

Query: 61 RQRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          RQRLLSYLSKKN++RYKELI+QLDIRESKT+
Sbjct: 61 RQRLLSYLSKKNRIRYKELISQLDIRESKTR 91

[Close]

BLAST of Sed0000963 vs. ExPASy Swiss-Prot
Match: Q0G9G2 (30S ribosomal protein S15, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps15 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-34
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KNSF SVI QEEK+KN GSVEFQVF+FTNKIRRLTSHLELH+KDYLSQ+GLRKILGKR
Sbjct: 1  MVKNSFISVIPQEEKEKNKGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLL+YLSKKN++RYKELI +LDIRE KT+
Sbjct: 61 QRLLAYLSKKNRVRYKELIGRLDIREPKTR 90

[Close]

BLAST of Sed0000963 vs. ExPASy Swiss-Prot
Match: A7Y3K4 (30S ribosomal protein S15, chloroplastic OS=Ipomoea purpurea OX=4121 GN=rps15-A PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-33
Identity = 75/89 (84.27%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KN F SVISQEE K+N GSVEFQ+FNFTNKI+RLTSHL+LHKKDYLSQKGLRKILGKR
Sbjct: 1  MVKNLFISVISQEETKENRGSVEFQIFNFTNKIQRLTSHLKLHKKDYLSQKGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKT 90
          QRLL+YLSKKNK+RYKELI +LDIRE+KT
Sbjct: 61 QRLLAYLSKKNKVRYKELIEKLDIRETKT 89

[Close]

BLAST of Sed0000963 vs. ExPASy TrEMBL
Match: A0A6H0ERM3 (30S ribosomal protein S15, chloroplastic OS=Sechium edule OX=184140 GN=rps15 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.5e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR
Sbjct: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. ExPASy TrEMBL
Match: A0A6H0ERX9 (30S ribosomal protein S15, chloroplastic OS=Cyclanthera pedata OX=198836 GN=rps15 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.2e-38
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          MLKNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKR
Sbjct: 1  MLKNSFSSVISQEEKKQNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. ExPASy TrEMBL
Match: A0A6H0EUU4 (30S ribosomal protein S15, chloroplastic OS=Linnaeosicyos amara OX=386243 GN=rps15 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.4e-38
Identity = 87/90 (96.67%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKR
Sbjct: 1  MVKNSFSSVISQEEKKENGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. ExPASy TrEMBL
Match: A0A6H0ERW3 (30S ribosomal protein S15, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rps15 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.4e-38
Identity = 87/90 (96.67%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKR
Sbjct: 1  MVKNSFSSVISQEEKKENGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. ExPASy TrEMBL
Match: A0A6H0EYC9 (30S ribosomal protein S15, chloroplastic OS=Nothoalsomitra suberosa OX=386201 GN=rps15 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.4e-38
Identity = 87/90 (96.67%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KNSFSSVISQEEKK+NGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQ+GLRKILGKR
Sbjct: 1  MVKNSFSSVISQEEKKENGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLLSYLSKKNKMRYKELINQLDIRESKTQ
Sbjct: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 90

[Close]

BLAST of Sed0000963 vs. TAIR 10
Match: ATCG01120.1 (chloroplast ribosomal protein S15 )

HSP 1 Score: 127.1 bits (318), Expect = 7.1e-30
Identity = 68/90 (75.56%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MLKNSFSSVISQEEKKKNGGSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKR 60
          M+KN   S   +E+K+++ GSVEFQVF+FTNKIRRLTSHLELH+KDYLSQ+GLRKILGKR
Sbjct: 1  MIKNIVISF--EEQKEESRGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKR 60

Query: 61 QRLLSYLSKKNKMRYKELINQLDIRESKTQ 91
          QRLL+YLSKKN++RYKELINQL+IRE KT+
Sbjct: 61 QRLLAYLSKKNRVRYKELINQLNIRELKTR 88

[Close]

BLAST of Sed0000963 vs. TAIR 10
Match: AT1G15810.1 (S15/NS1, RNA-binding protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 20  GSVEFQVFNFTNKIRRLTSHLELHKKDYLSQKGLRKILGKRQRLLSYLSKKNKMRYKELI 79
           GS   QV   T KI+ L+S   LHKKD  S+KGL  ++ KR++LL YL + +   Y  ++
Sbjct: 349 GSARVQVAQLTTKIKHLSS--SLHKKDKHSRKGLLGMVQKRKKLLKYLRRTDWDSYCLVL 408

Query: 80  NQLDIRES 88
           ++L +R++
Sbjct: 409 SKLSLRDN 414

The following BLAST results are available for this feature:

BLAST of Sed0000963 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009945461.1	1.3e-38	100.00	ribosomal protein S15 [Sechium edule] >QIT04189.1 ribosomal protein S15 [Sechium...	[more]
YP_009751962.1	8.7e-38	97.78	ribosomal protein S15 [Cyclanthera pedata] >QIT04780.1 ribosomal protein S15 [Cy...	[more]
YP_009752205.1	1.9e-37	96.67	ribosomal protein S15 [Linnaeosicyos amara] >YP_009752220.1 ribosomal protein S1...	[more]
YP_009752722.1	7.4e-37	95.56	ribosomal protein S15 [Ampelosycios humblotii] >QIT05203.1 ribosomal protein S15...	[more]
YP_009560892.1	1.3e-36	95.56	ribosomal protein S15 [Trichosanthes kirilowii] >YP_009752299.1 ribosomal protei...	[more]

BLAST of Sed0000963 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL1	6.3e-39	94.44	30S ribosomal protein S15, chloroplastic OS=Cucumis sativus OX=3659 GN=rps15 PE=...	[more]
Q09FY9	6.1e-34	85.23	30S ribosomal protein S15, chloroplastic OS=Platanus occidentalis OX=4403 GN=rps...	[more]
Q49KU1	7.9e-34	84.62	30S ribosomal protein S15, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]
Q0G9G2	7.9e-34	83.33	30S ribosomal protein S15, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]
A7Y3K4	1.0e-33	84.27	30S ribosomal protein S15, chloroplastic OS=Ipomoea purpurea OX=4121 GN=rps15-A ...	[more]

BLAST of Sed0000963 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ERM3	6.5e-39	100.00	30S ribosomal protein S15, chloroplastic OS=Sechium edule OX=184140 GN=rps15 PE=...	[more]
A0A6H0ERX9	4.2e-38	97.78	30S ribosomal protein S15, chloroplastic OS=Cyclanthera pedata OX=198836 GN=rps1...	[more]
A0A6H0EUU4	9.4e-38	96.67	30S ribosomal protein S15, chloroplastic OS=Linnaeosicyos amara OX=386243 GN=rps...	[more]
A0A6H0ERW3	9.4e-38	96.67	30S ribosomal protein S15, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rps15 PE...	[more]
A0A6H0EYC9	9.4e-38	96.67	30S ribosomal protein S15, chloroplastic OS=Nothoalsomitra suberosa OX=386201 GN...	[more]

BLAST of Sed0000963 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01120.1	7.1e-30	75.56	chloroplast ribosomal protein S15	[more]
AT1G15810.1	2.3e-04	39.71	S15/NS1, RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 11..85 e-value: 7.8E-23 score: 91.9
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 13..85 e-value: 9.4E-24 score: 83.4
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 36..66
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 15..83 e-value: 1.321E-20 score: 76.0026
IPR005290	Ribosomal protein S15, bacterial-type	TIGRFAM	TIGR00952	TIGR00952	coord: 12..86 e-value: 1.0E-21 score: 75.0
IPR005290	Ribosomal protein S15, bacterial-type	PANTHER	PTHR23321	RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR	coord: 12..86
IPR005290	Ribosomal protein S15, bacterial-type	HAMAP	MF_01343_B	Ribosomal_S15_B	coord: 1..86 score: 18.486195
None	No IPR available	GENE3D	1.10.287.10		coord: 1..90 e-value: 2.7E-31 score: 109.5
None	No IPR available	PANTHER	PTHR23321:SF27	30S RIBOSOMAL PROTEIN S15, CHLOROPLASTIC	coord: 12..86
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 14..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000963.1	Sed0000963.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome