Sed0000937 (gene) Chayote v1

Overview


Name	Sed0000937
Type	gene
Organism	Sechium edule (Chayote v1)
Description	cleavage stimulation factor subunit 77
Location	LG03: 15199026 .. 15202034 (-)
RNA-Seq Expression	Sed0000937
Synteny	Sed0000937

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTTTGAAGATCGTGAGAAAAAGTGCACAATGGTGAAAGACGTCAGAAGAGAAGCTCGACGACGATAGCACGGCGACAATGGGGAGAAGTTGCACACGAGGTGAAGTTGAGCGTGACAGAGAGATGTCGGTGACACAAGGTGATAGAGTCAATGTTGAACAAACATCTGAAACTCTCCCTTTTTTTGTGGGCTTTTCCTTTTTGTGCATGCTTTTCTTTTTGTATGCTCTTTCATTATTTTCTCAATAAAAGCTTGGATCATTATAAAAAAACAAGTTTCTTGTAATTTGTTATGCTTAATATTACTCCAATTGGAATTGTGTCTTCACTTGGCTTGGTTTAGGCTTTATTGTATGGAGTCTATGGACTCCTAATTTTTCATGGTACTCTAACAAAATTTCATGAATCAAGAGTCTTACGGGAAAGTAACAGTAGTCTTCGACCAAAATTCAATTGTGCTACAAAATAATTAATTTTACAGGGGTTCAGTCATTTTCCTTTGGGGATTTATGATTAAGGTCTAAAATAATTATTAAAACTGCTTGCTGTAAAAATAAAGAGAGCTTAAGGTAAATAGAGACTTCCAACAGTAACAATTAACCATAATAGAAATTTAACCAGCACTTGTACCATTTAATTAATGCCGATTGGAGTGAACTTTTGAACTCTGGGATCACTTTTCCCTCTTTTTATATTTTTCTTGACAATATGAGTGAAAAGGTTTTCTTTCTTAATAAACTTTTCTTATTGGGTGGTGCTAAATCTCTGATCACTCGTATAAAGATCCAAGAGCCTTTTACACTGAATCAATACTCATGGTTTTCTAATGATTGTTGTTGGGTCGATTCTTGTAGCAAGTTTTTTTTTAGTTCAATTAGAGTTAGGGGTCCACGAATCCATGACCTTTTAGTCCATAAACATACACTCTATGCCAATTGAGCTATGCTCTTGTTGGGTCTTTTAGCAAGTTTATCTTTAAAGCAAGAAGTCAAGGATTGTATCAACCCTCTGTTTCTCAATGTGGCACGTTTTGTGTTCAATCTATTTATGCATGTAACTTCCGTGTTCAGGATAAAACAGCTAGTAATAAACTTTTGGATGATTTGAAGTACAATGTTGAAGTGGCAGAAAGCTTGGCTAATGAGGCGCAGGTGTGACGTCATCTTTAGTTTTCACATCACATCTCATTCATCTCTCAATGAAGTTTAAGATTGAGTTTCCTCTTTGATTTAATAATGAATCCAATTATTTCCTATTAGCGTTTGCCTATGCTGGAGGCAACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCTGTGAGTTTCTTATGCACTTCAGTATTTTTTTTGTCTACCTTTACTTAGAGTATCTGCATTTTGAAATTCAAACATTATTTATTGTGGGCCTATGATCAGAATAGAGTAACTTATACAGGAAAAGTGGTTCTTTCTTTTTAGTTGGATGTAGCTGTTGAATCATTTTAAATTATCAATAAATTCAAAATCTTAAGCCAATAGGTTGGGGTTCAATTATATCAACCAATACTCTTCGATTGTGGGCTATAAAATTTGAAAAATGCCCCACAAGTAAGTTTAAACATAATCAATATTAATTAGGGAGGAAACGACTTCACGGGATTTTCAATTTTAACGCATGACCACATGACCTCCTGCTTTGATACTATGTTGATACTATGTTGCTTTGTATGAAATGATGACTTTATTCATATCTTATTGAGTCAAGAAGTAACGTGTTTATTTAAAGTGACTTCTATCTATATGCCTAAAACAATATTAACTATCTAAATATAGAAGGAATAATAAATATAGAGAAAGATACCAGGGATTAGATCTTAACTAAACACCACAACCTCCTTTTTTAATTTCTTTCGTAGCTTTGTATATTTTTAGAATCTATCTATCTACTAACTATTTTTCTTCAGGCTAAATATTGGAAGCAATATGTGGAGGCACACATGATTATAAATAACGATGATGCTACAAAACAGATATTTAGCCGGTGCTTATTAAACTGTCTTCACATTCCTCTTTGGTATGATTTTTTTTTAAACAAGAAACAGACTTTTTCTTTTTCTGTAGGAAAATGAAAAGAAGCTGAAGCTTCCGATACGCCTCCAAAGGGAGGAAATACAGAAAAACCTCTAAAAGAGGGAAAGAAAACAAACTTAGAAAAATAAATACAATGGTCAATTGCTAAGCCTAAAAAGACAAAAACAGAAAACCAGAACAAGATACTATAGAGATCTCTAAAGATAAAGAAGAAAGATTAAAAGACAAAATCCATTGTGCTCGAGATATTTGGTATGGTATTTGTTTCACCTATTAGTTATTAGTGGATAAATTTCATGTCCCCTGGTATGATGGAGGGTGCAATGTTTTCTAAGTTGACTACCATATTTAGCAATTCAAGGGGGGGGGGGGGTACTTTCTCTTGCTGTTATCATATTTATTGTTGTATTTCAACTATACTTGGGAAAATTATTCATGGACAGGCTATTGTTTCTTTGTGTTTGTATAGATAATAATTTTTTTTATGGAGGGCAGGGGTGTGTACTTTGTTCTGGGCAATTTGTGGGAGAGAATTAGTAGAATCTTGCATGAGGTTCAGTGAGATTCTAATATGGCCAAAGACTTCCAAGCTTACAAGGAAATGACTCTTTGTTTGGAAGCTCAATCTTTTTTTTTGAAACGGAGAACAATCTTTCTTTAAGAAAATGAAGATAGTACAATGGTGATAATAGAAACAATAAAAGAAATAAAAGACAACAGCAACAAAAGTAATGCAAATACAAATTTAGAAGACACAACAATATCAAAAAAGCAAATACAAAATTAAATAAAAGCTTCCCAATTTGAATATAGCTGTTGAATGGAGTAGTTGGCAAATTTTGAGGAACAACAACCCATAATGATACTTGGAGACGTGCTGAATCACTTCGAATAAGCCAAGGGCAAGAAGAGTCATGGAATATCCTCTGA

mRNA sequence

ATGGTCTTTGAAGATCGTGAGAAAAAGTGCACAATGGATAAAACAGCTAGTAATAAACTTTTGGATGATTTGAAGTACAATGTTGAAGTGGCAGAAAGCTTGGCTAATGAGGCGCAGCGTTTGCCTATGCTGGAGGCAACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCTGTGAGTTTCTTATGCACTTCAGTATTTTTTTTACGTGCTGAATCACTTCGAATAAGCCAAGGGCAAGAAGAGTCATGGAATATCCTCTGA

Coding sequence (CDS)

ATGGTCTTTGAAGATCGTGAGAAAAAGTGCACAATGGATAAAACAGCTAGTAATAAACTTTTGGATGATTTGAAGTACAATGTTGAAGTGGCAGAAAGCTTGGCTAATGAGGCGCAGCGTTTGCCTATGCTGGAGGCAACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCTGTGAGTTTCTTATGCACTTCAGTATTTTTTTTACGTGCTGAATCACTTCGAATAAGCCAAGGGCAAGAAGAGTCATGGAATATCCTCTGA

Protein sequence

MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSFLCTSVFFLRAESLRISQGQEESWNIL

Homology

[Close]

BLAST of Sed0000937 vs. NCBI nr
Match: XP_038881157.1 (cleavage stimulation factor subunit 77 [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTA 60
          MV E  E K   DKT SNKLLD LKYNVEVAES+ANEAQRLP+LEATPLYEQLLTVYPTA
Sbjct: 1  MVSEGSESK---DKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTA 60

Query: 61 VSF 64
            +
Sbjct: 61 AKY 60

[Close]

BLAST of Sed0000937 vs. NCBI nr
Match: XP_011653953.1 (cleavage stimulation factor subunit 77 [Cucumis sativus] >KGN55377.2 hypothetical protein Csa_012110 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 5.1e-14
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 13 DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF 64
          DKT SNKLLD LKYNVEVAES+ANEAQRLP+LEATPLYEQLLTVYPTA  +
Sbjct: 10 DKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAAKY 60

[Close]

BLAST of Sed0000937 vs. NCBI nr
Match: XP_022966187.1 (cleavage stimulation factor subunit 77 [Cucurbita maxima] >XP_022966188.1 cleavage stimulation factor subunit 77 [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTA 60
          M  E  E K   DKTASNKLLDDLKYNVEVAE++A EAQRLP+ EATPLYEQLLTVYPTA
Sbjct: 1  MTSEGSESK---DKTASNKLLDDLKYNVEVAENVAKEAQRLPISEATPLYEQLLTVYPTA 60

Query: 61 VSF 64
            +
Sbjct: 61 AKY 60

[Close]

BLAST of Sed0000937 vs. NCBI nr
Match: XP_023518607.1 (cleavage stimulation factor subunit 77 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTA 60
          M  E  E K   DKTASNKLLDDLKYNVEVAE++A EAQRLP+ EATPLYEQLLTVYPTA
Sbjct: 1  MTSEGSESK---DKTASNKLLDDLKYNVEVAENVAKEAQRLPISEATPLYEQLLTVYPTA 60

Query: 61 VSF 64
            +
Sbjct: 61 AKY 60

[Close]

BLAST of Sed0000937 vs. NCBI nr
Match: XP_022154466.1 (cleavage stimulation factor subunit 77 isoform X1 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 13 DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF 64
          DK+ASNKLLD+LKYNVEVAE +AN+AQRLP+LEATPLYEQLLTVYPTA  +
Sbjct: 10 DKSASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTAAKY 60

[Close]

BLAST of Sed0000937 vs. ExPASy Swiss-Prot
Match: Q8GUP1 (Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana OX=3702 GN=CSTF77 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 25 KYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF 64
          KY VE AE+LA  A   P+ +ATP+YEQLL++YPT+  F
Sbjct: 4  KYIVEEAEALAKRALHSPIAQATPIYEQLLSLYPTSARF 42

[Close]

BLAST of Sed0000937 vs. ExPASy TrEMBL
Match: A0A0A0L2S4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G593920 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.2e-14
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 13 DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTA 61
          DKT SNKLLD LKYNVEVAES+ANEAQRLP+LEATPLYEQLLTVYPTA
Sbjct: 10 DKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTA 57

[Close]

BLAST of Sed0000937 vs. ExPASy TrEMBL
Match: A0A6J1HMA9 (cleavage stimulation factor subunit 77 OS=Cucurbita maxima OX=3661 GN=LOC111465940 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.5e-14
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MVFEDREKKCTMDKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTA 60
          M  E  E K   DKTASNKLLDDLKYNVEVAE++A EAQRLP+ EATPLYEQLLTVYPTA
Sbjct: 1  MTSEGSESK---DKTASNKLLDDLKYNVEVAENVAKEAQRLPISEATPLYEQLLTVYPTA 60

Query: 61 VSF 64
            +
Sbjct: 61 AKY 60

[Close]

BLAST of Sed0000937 vs. ExPASy TrEMBL
Match: A0A6J1DLS0 (cleavage stimulation factor subunit 77 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021740 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.4e-14
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 13 DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF 64
          DK+ASNKLLD+LKYNVEVAE +AN+AQRLP+LEATPLYEQLLTVYPTA  +
Sbjct: 10 DKSASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTAAKY 60

[Close]

BLAST of Sed0000937 vs. ExPASy TrEMBL
Match: A0A6J1DNS9 (cleavage stimulation factor subunit 77 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021740 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.4e-14
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 13 DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF 64
          DK+ASNKLLD+LKYNVEVAE +AN+AQRLP+LEATPLYEQLLTVYPTA  +
Sbjct: 10 DKSASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTAAKY 60

[Close]

BLAST of Sed0000937 vs. ExPASy TrEMBL
Match: A0A5A7TEI5 (Cleavage stimulation factor subunit 77 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002250 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 13  DKTASNKLLDDLKYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF 64
           DKT SNKLLD LKYNVEVAES+A EAQRLP+LEATPLYEQLLTVYPTA  +
Sbjct: 68  DKTTSNKLLDGLKYNVEVAESVATEAQRLPILEATPLYEQLLTVYPTAAKY 118

[Close]

BLAST of Sed0000937 vs. TAIR 10
Match: AT1G17760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 25 KYNVEVAESLANEAQRLPMLEATPLYEQLLTVYPTAVSF 64
          KY VE AE+LA  A   P+ +ATP+YEQLL++YPT+  F
Sbjct: 4  KYIVEEAEALAKRALHSPIAQATPIYEQLLSLYPTSARF 42

The following BLAST results are available for this feature:

BLAST of Sed0000937 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881157.1	1.3e-14	77.78	cleavage stimulation factor subunit 77 [Benincasa hispida]	[more]
XP_011653953.1	5.1e-14	86.27	cleavage stimulation factor subunit 77 [Cucumis sativus] >KGN55377.2 hypothetica...	[more]
XP_022966187.1	1.1e-13	74.60	cleavage stimulation factor subunit 77 [Cucurbita maxima] >XP_022966188.1 cleava...	[more]
XP_023518607.1	1.1e-13	74.60	cleavage stimulation factor subunit 77 [Cucurbita pepo subsp. pepo]	[more]
XP_022154466.1	1.9e-13	82.35	cleavage stimulation factor subunit 77 isoform X1 [Momordica charantia]	[more]

BLAST of Sed0000937 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GUP1	2.2e-04	56.41	Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana OX=3702 GN=CSTF77...	[more]

BLAST of Sed0000937 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2S4	4.2e-14	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G593920 PE=4 SV=1	[more]
A0A6J1HMA9	5.5e-14	74.60	cleavage stimulation factor subunit 77 OS=Cucurbita maxima OX=3661 GN=LOC1114659...	[more]
A0A6J1DLS0	9.4e-14	82.35	cleavage stimulation factor subunit 77 isoform X2 OS=Momordica charantia OX=3673...	[more]
A0A6J1DNS9	9.4e-14	82.35	cleavage stimulation factor subunit 77 isoform X1 OS=Momordica charantia OX=3673...	[more]
A0A5A7TEI5	1.2e-13	84.31	Cleavage stimulation factor subunit 77 isoform X2 OS=Cucumis melo var. makuwa OX...	[more]

BLAST of Sed0000937 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17760.1	1.6e-05	56.41	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000937.1	Sed0000937.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0031123	RNA 3'-end processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding