Sed0000934 (gene) Chayote v1

Overview
NameSed0000934
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPhotosystem I reaction center subunit IV
LocationLG11: 8050116 .. 8053430 (-)
RNA-Seq ExpressionSed0000934
SyntenySed0000934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTCCATAGGCTGAAAAAATTGCACAAAAGAATCATTATGTGGTTTACATTTATTACTCAAACCTCATCATCTCCAAAGGCATTAGCTGAAACTTTGAGAGACAGAGCCCATGGCTGCCTCTAACCTTTCATGCATTGCTCCTGGCCTTGTCATTCCCCCTTCAACCACCATTTCTTCCTCTTCCAAGTTACCTTCTTTGGCATTCTTCCCCAAGAATTCCTCCTCTCTTTCTAGATCATCTAGATTGGTTATCCGTGCCTCGACCGAGGATGCCGCTCCCCCGCCCCCTGCCGCTGCCGCCACCGCCGATGCCCCGGCCGAAGCACCCAAGCCCAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCAAAGGTGCGTGAAAGTACCTTTTTCTTATGAACCTCTTTAGTTTAAGTTCTTCAATTATTAGGTTAAAATATCATTTAAATTTGAGATTTGTTCTGTTTTGTTACATTTGAAAAGTCTAATTTTAGTCATAAATTTTGAACCTAGTCATTGATTTTCAGATTTTCTCCATTGTGAACATTAAAAAAAGTCTTAAAATTAGTATTAGGAAAGATTTTGATAATTTTTTTTCTAAAATAATTAACCTTCTTCCACCAATTTCAGTAATATCAATTTCAAATTATAAGAGCTACTAATTTGAAGGAACTAAGATCAAACATTTAATAGTTTGAGGATCAAAATGAATCAAACTTCAAAATTCAAGATTAAAATTAATGTTTAGGGACGAAAATAGAATAAATCTCAAAATTTAAAATAAAAAAGATATTTTAGCCTAATTATTAATATTGTCAAGCATCACAAGTGACTTAATGGTCAAAATAACTTTTTAGGAGGTATTTGGATTAAGTTTTGGATTACGGGTTATAAGATTGAATTTTTGTAATGTCTGTTTGGATATAGAGTTTTGTGCAAGAGTTGGGCAAAACATTTATATGTGATTTTAAACTAGTTTATATGTGCTTTTTTAATATAAAAGTTTGAGGCAGTAACTATTTTGGAGGTGGATTGGAAAAGATTAATTATTTTGAATAATTAAAAATTAGTGATTAGAAATAAAGGATTAAAAATGACTTATTTTAGTAATTAAAAACGAAAGATATGTGTTGAATACATACAAATGAATTATTAGTTAGTGAAAGGTTATGAGTTCAATTTTTTATAAGCTTCTCATGTTGGAATTAATTTTGAGTTTATATATTAAGAAAATAGAATATTATTATTTTCACACATTGTTTAACACTGAAGAGAAAATTTTGGGCTATTTTTTTATTGAATTTTTTGTTGTTGTGTATTGTGTTTGATTTGTTTTGAAATCTTGTCATGTATTTGTACAGGTTAAGATTCTGAGGAAAGAATCCTACTGGTTCAAGGATGTGGGATCTGTTGTGACAGTTGACCAGGTTGGTCAATAAAATTTGATTCTTTTGTTATGTTTTTATTTGGAGTTTGTGTTTGCTAATGGAAAGTTTCTTTCATTATTTTTCATTCTTCTTTACATTTTAGAGTGCTCTGTTTTGTGTGGTTATTATTTTTAACATTTTTTTTAGAATGACTCTGTTTGTGATTGGTTCTTGCTGATGTTCAAAGTGGTTATTAGAATTTTAATTCTTTAAGCTCAATTTCAAAATATTTTTGGTTTGGTTTTGAATTATTTACCCAATTTTAAAGCACAAACAAATATTTGTTTTCAGTTTTAAATTTCAAATAGTTACTCTATGTTCAACTTCAAATTAATTTACCAACTAAAAATTGAGCTCAACTGACATTAAATACGTACCTTTATCCAAAAAATTATGAATTCAAATCCTTCAATTCTTTGGGTCAGTGACGTAATGATTTCATTGTTTGATTGTAAACCAGTTTAACAATAGCTCGCAGGTTCGAACCTACAAATTAATTTGGATGATTTTGGCCCCGTTTGAAAACTATTTTATTTTTCATTTATTGTTTTTTAAATTGAAGCCTACAACAACTACTTTATCATAGTTTTTTTTTTATTTGGATATGCTTACAAAAGCTTGTTTTTGTTTTTGAAATTTGGTTAGTATGCACTACTTTCTTAAGGAAAGATGAATATATTGTATGAAAGATAGACCACATGATAGAAAATTTGAGTAAAAATATGCTTAAATTTCATAAACAAAAAACGAAATGATTATCAAACGGGTCTTCATTCCCAATAATGATTATTTTCAAAATCCAATAAACAAAAATAAGGGTTTTAGATTATTTTTTCCTTTATTTTAGTTTTTGAATTCAACTATTGTTAGTCCTAAGATTTAAACTTACGACATCTTAATTAGAATACCTTTTGTTAACTATTTCCTTAAAAATCTAATTCTTCTTCTAGGAATTTCTACTAATTTTACTTTTCATGTTTAAAATCTAAATGTACTAAACACTAATTTAGTCTATATTACAGCTGCAAATAAGACTAAGATGTAATCCCAACCCGCAGCATTAGGTCTAATTTAAGCATTAAAATGAGTCATAGAATGTTTCTAGTGGAACAATTTTAACAGTACCAACTAATTAGGTCGTGATAATTATTTCGTTTTTTGTTTTTTTATTTTTAATTTTTAATTTTTGGTTATTAGTTTTTTGTCTTAAAAAATAAAAATTATTTATGTTTGATAACTTATTTTAGTTTTATGTTTTTAAAAATTAAAAATAAAAAAACATGTTCGATAACCGTTTTTTATTTTCAAACATCACATTTTGTTATAATTTTTTTAGTTTTTTACTATTTATTCTTGATTTGTTTATGTTTTTTTAAAAACAAAAACAAAAACATGTTTTTAAAAGTTACTTTTTTAGTTTTTGGAATTCCTTTAATATTTTAAAAGTATTTTTAAAATTTTGAAAACAAAAATTAAAATTGGTTATCTAACAAATCTATTTTAAAAATATTAAAAACAAAAACAGAAAATAAAAAATGAAATATGGTTATCAAATAGAGTTTTAGTTTTTCAGATTTTAGAAACTTTATATGTAATAATGATTAATTTAATGTATAAATGATATTTTGCAGGACCCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAATTATGCACTTGATGAGGTTGAAGAAGTTGCTTAAGATTTTTATGCGTTTGTGTGTATTTTTTAGCTAAATGTTTGTATAATACTTCCAATTTTAATCTATTTCTCCCCTCCATCAGTGTGTGTTATAATTTCTCTTATATTTTACTATATATATAGTTCACAAGAATCACTAATTTTGTTATGCT

mRNA sequence

CTTTTCCATAGGCTGAAAAAATTGCACAAAAGAATCATTATGTGGTTTACATTTATTACTCAAACCTCATCATCTCCAAAGGCATTAGCTGAAACTTTGAGAGACAGAGCCCATGGCTGCCTCTAACCTTTCATGCATTGCTCCTGGCCTTGTCATTCCCCCTTCAACCACCATTTCTTCCTCTTCCAAGTTACCTTCTTTGGCATTCTTCCCCAAGAATTCCTCCTCTCTTTCTAGATCATCTAGATTGGTTATCCGTGCCTCGACCGAGGATGCCGCTCCCCCGCCCCCTGCCGCTGCCGCCACCGCCGATGCCCCGGCCGAAGCACCCAAGCCCAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCAAAGGTTAAGATTCTGAGGAAAGAATCCTACTGGTTCAAGGATGTGGGATCTGTTGTGACAGTTGACCAGGACCCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAATTATGCACTTGATGAGGTTGAAGAAGTTGCTTAAGATTTTTATGCGTTTGTGTGTATTTTTTAGCTAAATGTTTGTATAATACTTCCAATTTTAATCTATTTCTCCCCTCCATCAGTGTGTGTTATAATTTCTCTTATATTTTACTATATATATAGTTCACAAGAATCACTAATTTTGTTATGCT

Coding sequence (CDS)

ATGGCTGCCTCTAACCTTTCATGCATTGCTCCTGGCCTTGTCATTCCCCCTTCAACCACCATTTCTTCCTCTTCCAAGTTACCTTCTTTGGCATTCTTCCCCAAGAATTCCTCCTCTCTTTCTAGATCATCTAGATTGGTTATCCGTGCCTCGACCGAGGATGCCGCTCCCCCGCCCCCTGCCGCTGCCGCCACCGCCGATGCCCCGGCCGAAGCACCCAAGCCCAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCAAAGGTTAAGATTCTGAGGAAAGAATCCTACTGGTTCAAGGATGTGGGATCTGTTGTGACAGTTGACCAGGACCCAAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAATTATGCACTTGATGAGGTTGAAGAAGTTGCTTAA

Protein sequence

MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
Homology
[Close]
BLAST of Sed0000934 vs. NCBI nr
Match: XP_022937722.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata] >KAG6586174.1 Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021006.1 Photosystem I reaction center subunit IV, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.9 bits (585), Expect = 1.3e-56
Identity = 122/143 (85.31%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPP 60
           MAASNLSCIA G++IP STTISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAEAPKPKPAPIGPKRG KVKILR+ESYW+KDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]
BLAST of Sed0000934 vs. NCBI nr
Match: XP_023536804.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 3.0e-56
Identity = 122/143 (85.31%), Postives = 133/143 (93.01%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPP 60
           MAASNLSCIA G++IP S TISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAEAPKPKPAPIGPKRG KVKILRKESYW+KDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]
BLAST of Sed0000934 vs. NCBI nr
Match: XP_022965997.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-55
Identity = 120/143 (83.92%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPP 60
           MAASNLSCIA G++IP S TISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAE PKPKPAPIGPKRG KVKILR+ESYW+KDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]
BLAST of Sed0000934 vs. NCBI nr
Match: XP_008441802.1 (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 2.8e-54
Identity = 124/144 (86.11%), Postives = 131/144 (90.97%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTI-SSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPP 60
           MAASNLSCIA G+VIP STTI SSSS+L SLAFFPKNS+S+SRSSRLVIRA+  D A PP
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 62

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVV 120
           P AAA A A AE PKPKPAPIGPKRGAKVKILRKESYW+KDVGSVVTVDQDPNTRYPVVV
Sbjct: 63  PPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 122

Query: 121 RFNKVNYASVSTNNYALDEVEEVA 144
           RFNKVNYASVSTNNYALDE+EEVA
Sbjct: 123 RFNKVNYASVSTNNYALDEIEEVA 146

[Close]
BLAST of Sed0000934 vs. NCBI nr
Match: XP_022144405.1 (photosystem I reaction center subunit IV, chloroplastic-like [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 4.7e-54
Identity = 121/143 (84.62%), Postives = 131/143 (91.61%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPP 60
           MAA+NLSCIA G+VIP S TISSSS+L S+AFFPKN + +SR  RLVIRA+ ++AAPPPP
Sbjct: 1   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAP E  KPKPAPIGPKRGAKVKILRKESYW+KDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDEVEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEVEEVA 141

[Close]
BLAST of Sed0000934 vs. ExPASy Swiss-Prot
Match: Q41229 (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-32
Identity = 85/144 (59.03%), Postives = 108/144 (75.00%), Query Frame = 0 

Query: 1   MAASNLSCIAPG-LVIPPSTTISSSSKLPSLAFFPKNSSSLSRS-SRLVIRASTEDAAPP 60
           MA+S+++  A G +V  P+   S+++   S+ FF  + ++ + +  RLV+RA+ E+AAPP
Sbjct: 1   MASSSMASAASGFMVATPNIATSNTAPRTSMLFFSSSKNNTTTNFPRLVVRAA-EEAAPP 60

Query: 61  PPAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVV 120
              A A  +AP  A   KP PIGPKRG KV++LRKESYW+K VGSVV VDQDPNTRYPVV
Sbjct: 61  AATATAEGEAP-PAKAAKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVV 120

Query: 121 VRFNKVNYASVSTNNYALDEVEEV 143
           VRFNKVNYA+VSTNNYALDEVEEV
Sbjct: 121 VRFNKVNYANVSTNNYALDEVEEV 142

[Close]
BLAST of Sed0000934 vs. ExPASy Swiss-Prot
Match: Q41228 (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-32
Identity = 87/145 (60.00%), Postives = 106/145 (73.10%), Query Frame = 0 

Query: 1   MAASNLSCIAPG-LVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPP 60
           MA+ N++  A   LV  P+   ++++   ++ FF   +   S + RLV+RA+ E A   P
Sbjct: 1   MASCNMASAASNFLVATPNVASNTNTSRTTMLFFSSKNYG-STAPRLVVRAAEEAA---P 60

Query: 61  PAAAATADAPAEAP--KPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPV 120
           PAAAATA+ PAEAP    KP PIGPKRG KV+ILRKESYW+K  GSVV  DQDPNTRYPV
Sbjct: 61  PAAAATAE-PAEAPVKAAKPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPV 120

Query: 121 VVRFNKVNYASVSTNNYALDEVEEV 143
           VVRFNKVNYA+VSTNNYALDE+EEV
Sbjct: 121 VVRFNKVNYANVSTNNYALDEIEEV 140

[Close]
BLAST of Sed0000934 vs. ExPASy Swiss-Prot
Match: Q9S831 (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-31
Identity = 87/138 (63.04%), Postives = 101/138 (73.19%), Query Frame = 0 

Query: 14  VIPPSTT--ISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAP------PPPAAAAT 73
           V+P + T    +SS   S++F P  ++     SRLV+RA+ ED AP        PAAAA 
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMRNA----GSRLVVRAA-EDPAPASSSSKDSPAAAAA 70

Query: 74  ADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVN 133
            D  A A KPKP PIGPKRG+KVKILR+ESYWFK+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 71  PDG-ATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVN 130

Query: 134 YASVSTNNYALDEVEEVA 144
           YA++STNNYALDEVEEVA
Sbjct: 131 YANISTNNYALDEVEEVA 142

[Close]
BLAST of Sed0000934 vs. ExPASy Swiss-Prot
Match: P12354 (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-30
Identity = 78/126 (61.90%), Postives = 94/126 (74.60%), Query Frame = 0 

Query: 18  STTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAAAATADAPAEAPKPKP 77
           S   S + +L      P  + S  RS+RLV+RA+ E+AA  P AA+   +AP  A   KP
Sbjct: 3   SIASSVAVRLGLTQVLPNKNFSSPRSTRLVVRAA-EEAAAAPAAASPEGEAPKAA--AKP 62

Query: 78  APIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALD 137
            PIGPKRG+KV+I+RKESYW+K VGSVV VDQDP TRYPVVVRFNKVNYA+VSTNNYALD
Sbjct: 63  PPIGPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALD 122

Query: 138 EVEEVA 144
           E++EVA
Sbjct: 123 EIQEVA 125

[Close]
BLAST of Sed0000934 vs. ExPASy Swiss-Prot
Match: Q9S714 (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE2 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-28
Identity = 79/134 (58.96%), Postives = 92/134 (68.66%), Query Frame = 0 

Query: 15  IPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAA------AATADA 74
           +P +    SS     ++F P  S      SRLV+RA+ ED  P   ++      AA A A
Sbjct: 16  VPAAIGGGSSKSTTIVSFLPMRSF----GSRLVVRAA-EDTPPATASSDSSSTTAAAAPA 75

Query: 75  PAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYAS 134
              A K KP PIGPKRG+KVKILRKESYW+K+VGSVV VDQDP TRYPVVVRF KVNYA+
Sbjct: 76  KVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYAN 135

Query: 135 VSTNNYALDEVEEV 143
           +STNNYALDEVEEV
Sbjct: 136 ISTNNYALDEVEEV 144

[Close]
BLAST of Sed0000934 vs. ExPASy TrEMBL
Match: A0A6J1FC09 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444038 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.5e-57
Identity = 122/143 (85.31%), Postives = 134/143 (93.71%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPP 60
           MAASNLSCIA G++IP STTISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAEAPKPKPAPIGPKRG KVKILR+ESYW+KDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]
BLAST of Sed0000934 vs. ExPASy TrEMBL
Match: A0A6J1HLT8 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465716 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.3e-56
Identity = 120/143 (83.92%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPP 60
           MAASNLSCIA G++IP S TISSSS+  S+AFFPKNS S+SRS RLV+RA+ ++AA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAPAE PKPKPAPIGPKRG KVKILR+ESYW+KDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]
BLAST of Sed0000934 vs. ExPASy TrEMBL
Match: A0A1S3B3T3 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 124/144 (86.11%), Postives = 131/144 (90.97%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTI-SSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPP 60
           MAASNLSCIA G+VIP STTI SSSS+L SLAFFPKNS+S+SRSSRLVIRA+  D A PP
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 62

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVV 120
           P AAA A A AE PKPKPAPIGPKRGAKVKILRKESYW+KDVGSVVTVDQDPNTRYPVVV
Sbjct: 63  PPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 122

Query: 121 RFNKVNYASVSTNNYALDEVEEVA 144
           RFNKVNYASVSTNNYALDE+EEVA
Sbjct: 123 RFNKVNYASVSTNNYALDEIEEVA 146

[Close]
BLAST of Sed0000934 vs. ExPASy TrEMBL
Match: A0A6J1CRI6 (photosystem I reaction center subunit IV, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014100 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.3e-54
Identity = 121/143 (84.62%), Postives = 131/143 (91.61%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPP 60
           MAA+NLSCIA G+VIP S TISSSS+L S+AFFPKN + +SR  RLVIRA+ ++AAPPPP
Sbjct: 1   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPP 60

Query: 61  AAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVR 120
           AAAATADAP E  KPKPAPIGPKRGAKVKILRKESYW+KDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDEVEEVA
Sbjct: 121 FNKVNYASVSTNNYALDEVEEVA 141

[Close]
BLAST of Sed0000934 vs. ExPASy TrEMBL
Match: A0A0A0LJQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.8e-52
Identity = 122/144 (84.72%), Postives = 129/144 (89.58%), Query Frame = 0 

Query: 1   MAASNLSCIAPGLVIPPSTTI-SSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPP 60
           MAASNLSCIA G+VIP STTI SSSS+L SLAFFPKNS+S+SRSSRLVIRAS  D A PP
Sbjct: 79  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAS--DEAAPP 138

Query: 61  PAAAATADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVV 120
           PAA A   A  E PKPKPAPIGPKRGAKVKILRKESYW+KDVGSVVTVDQDPNTRYPVVV
Sbjct: 139 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 198

Query: 121 RFNKVNYASVSTNNYALDEVEEVA 144
           RFNKVNYASVSTNNYALDE++EVA
Sbjct: 199 RFNKVNYASVSTNNYALDEIQEVA 220

[Close]
BLAST of Sed0000934 vs. TAIR 10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-32
Identity = 87/138 (63.04%), Postives = 101/138 (73.19%), Query Frame = 0 

Query: 14  VIPPSTT--ISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAP------PPPAAAAT 73
           V+P + T    +SS   S++F P  ++     SRLV+RA+ ED AP        PAAAA 
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMRNA----GSRLVVRAA-EDPAPASSSSKDSPAAAAA 70

Query: 74  ADAPAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVN 133
            D  A A KPKP PIGPKRG+KVKILR+ESYWFK+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 71  PDG-ATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVN 130

Query: 134 YASVSTNNYALDEVEEVA 144
           YA++STNNYALDEVEEVA
Sbjct: 131 YANISTNNYALDEVEEVA 142

[Close]
BLAST of Sed0000934 vs. TAIR 10
Match: AT2G20260.1 (photosystem I subunit E-2 )

HSP 1 Score: 125.6 bits (314), Expect = 3.3e-29
Identity = 79/134 (58.96%), Postives = 92/134 (68.66%), Query Frame = 0 

Query: 15  IPPSTTISSSSKLPSLAFFPKNSSSLSRSSRLVIRASTEDAAPPPPAA------AATADA 74
           +P +    SS     ++F P  S      SRLV+RA+ ED  P   ++      AA A A
Sbjct: 16  VPAAIGGGSSKSTTIVSFLPMRSF----GSRLVVRAA-EDTPPATASSDSSSTTAAAAPA 75

Query: 75  PAEAPKPKPAPIGPKRGAKVKILRKESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYAS 134
              A K KP PIGPKRG+KVKILRKESYW+K+VGSVV VDQDP TRYPVVVRF KVNYA+
Sbjct: 76  KVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYAN 135

Query: 135 VSTNNYALDEVEEV 143
           +STNNYALDEVEEV
Sbjct: 136 ISTNNYALDEVEEV 144

The following BLAST results are available for this feature:
BLAST of Sed0000934 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937722.11.3e-5685.31photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata... [more]
XP_023536804.13.0e-5685.31photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo sub... [more]
XP_022965997.11.9e-5583.92photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima][more]
XP_008441802.12.8e-5486.11PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis... [more]
XP_022144405.14.7e-5484.62photosystem I reaction center subunit IV, chloroplastic-like [Momordica charanti... [more]
BLAST of Sed0000934 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q412291.4e-3259.03Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri... [more]
Q412284.1e-3260.00Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri... [more]
Q9S8311.5e-3163.04Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian... [more]
P123543.8e-3061.90Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=... [more]
Q9S7144.6e-2858.96Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thalian... [more]
BLAST of Sed0000934 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FC096.5e-5785.31photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moscha... [more]
A0A6J1HLT89.3e-5683.92photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima... [more]
A0A1S3B3T31.3e-5486.11photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=... [more]
A0A6J1CRI62.3e-5484.62photosystem I reaction center subunit IV, chloroplastic-like OS=Momordica charan... [more]
A0A0A0LJQ12.8e-5284.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1[more]
BLAST of Sed0000934 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G28750.11.1e-3263.04Photosystem I reaction centre subunit IV / PsaE protein [more]
AT2G20260.13.3e-2958.96photosystem I subunit E-2 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.50coord: 76..143
e-value: 2.0E-36
score: 125.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..84
NoneNo IPR availablePANTHERPTHR34549:SF7PHOTOSYSTEM I REACTION CENTER SUBUNIT IV Acoord: 1..142
IPR003375Photosystem I PsaE, reaction centre subunit IVPFAMPF02427PSI_PsaEcoord: 83..142
e-value: 1.2E-30
score: 105.0
IPR003375Photosystem I PsaE, reaction centre subunit IVPANTHERPTHR34549PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATEDcoord: 1..142
IPR008990Electron transport accessory-like domain superfamilySUPERFAMILY50090Electron transport accessory proteinscoord: 82..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0000934.1Sed0000934.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0009522 photosystem I