Sed0000812 (gene) Chayote v1

Overview


Name	Sed0000812
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Poly(A)-specific ribonuclease
Location	LG05: 44432464 .. 44433494 (-)
RNA-Seq Expression	Sed0000812
Synteny	Sed0000812

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGAGGAAATCGAGCTCGTTCGAGAAGAGGAAAGCTTTGGATTCGAGAAGTTTGGGCTTCGAATATCCGTCACGAAATCTCCGAACTCGATCAATGTCTTCAACATTACAGAATTCTGTCCATCGACACCGAATTCCCCGGATTTATTAGGAGCACTCCGTGGGGCTCAATCGACCAACAACTCTACGAAGATCTTCGATTCAATGTGACTAAAACCAAGTTGATCCAACTGGGATTAACCGCTTTGGATGAATTAGGGAATGTCGGCGGCATATGGGAGTTCAACTTCTCCGATTTCGACTCGGAGTTCGACGCACACAATCCTTCGTCGATTTTGTTCCTCAAACAGAACGGACACGACTTCGAAAAGATGAAGACAAAAGGTATCCCATTGAGCACATTCACTACCGATTTTGTTCGTGTATTGAAAAAGAATAAGATCCATAGATGGATCACATTCCACGGATTATATGATATCGGGTGAGTAAAAATCACCACTATTTGGAATATTGTTGTTTTTGAATTGTTGAATTATGTTATGTTGAATTATGTTAAATCACCAACATTTTTAATAAATTATGTTAATCATCGATCAATACAAAAACTTAATCTTAGTTATGTCAACTAATAGGTTTTGTGAACAGGTATCTGTTGCAAGCGATGGGGTTCGTGGAGTTTCCGGAATTGATGGAAGAATTTGCTGGGATGGTTGCGAACAAGGTCGGGATTGTGAGGGACTTGAAGCACATGGCTCGATTCTGCGAAGGGTTGGAGGATGGGAGGATTGGGCTAGAGAGATTGGGGGAATTGATGCAACAAAAAAGGTTTGGAATGAAACACCATGCTGGTTCAGATAGCTTGTTGTGTGCTTGTATTCATACAAAGATGATTGAATTGTATGCTATGGAATCAAGTATTTGTGATGGGTATTTGTATGGAATCTCAACTAGAATTCAGTTCAAGTATATAATGTTTGGAACCCTTATGTTTAGTCAAATGTCATCATCAATTCCACTTAGTGAGTGA

mRNA sequence

ATGGGTGGAGGAAATCGAGCTCGTTCGAGAAGAGGAAAGCTTTGGATTCGAGAAGTTTGGGCTTCGAATATCCGTCACGAAATCTCCGAACTCGATCAATGTCTTCAACATTACAGAATTCTGTCCATCGACACCGAATTCCCCGGATTTATTAGGAGCACTCCGTGGGGCTCAATCGACCAACAACTCTACGAAGATCTTCGATTCAATGTGACTAAAACCAAGTTGATCCAACTGGGATTAACCGCTTTGGATGAATTAGGGAATGTCGGCGGCATATGGGAGTTCAACTTCTCCGATTTCGACTCGGAGTTCGACGCACACAATCCTTCGTCGATTTTGTTCCTCAAACAGAACGGACACGACTTCGAAAAGATGAAGACAAAAGGTATCCCATTGAGCACATTCACTACCGATTTTGTTCGTGTATTGAAAAAGAATAAGATCCATAGATGGATCACATTCCACGGATTATATGATATCGGGTATCTGTTGCAAGCGATGGGGTTCGTGGAGTTTCCGGAATTGATGGAAGAATTTGCTGGGATGGTTGCGAACAAGGTCGGGATTGTGAGGGACTTGAAGCACATGGCTCGATTCTGCGAAGGGTTGGAGGATGGGAGGATTGGGCTAGAGAGATTGGGGGAATTGATGCAACAAAAAAGGTTTGGAATGAAACACCATGCTGGTTCAGATAGCTTGTTGTGTGCTTGTATTCATACAAAGATGATTGAATTGTATGCTATGGAATCAAGTATTTGTGATGGGTATTTGTATGGAATCTCAACTAGAATTCAGTTCAAGTATATAATGTTTGGAACCCTTATGTTTAGTCAAATGTCATCATCAATTCCACTTAGTGAGTGA

Coding sequence (CDS)

ATGGGTGGAGGAAATCGAGCTCGTTCGAGAAGAGGAAAGCTTTGGATTCGAGAAGTTTGGGCTTCGAATATCCGTCACGAAATCTCCGAACTCGATCAATGTCTTCAACATTACAGAATTCTGTCCATCGACACCGAATTCCCCGGATTTATTAGGAGCACTCCGTGGGGCTCAATCGACCAACAACTCTACGAAGATCTTCGATTCAATGTGACTAAAACCAAGTTGATCCAACTGGGATTAACCGCTTTGGATGAATTAGGGAATGTCGGCGGCATATGGGAGTTCAACTTCTCCGATTTCGACTCGGAGTTCGACGCACACAATCCTTCGTCGATTTTGTTCCTCAAACAGAACGGACACGACTTCGAAAAGATGAAGACAAAAGGTATCCCATTGAGCACATTCACTACCGATTTTGTTCGTGTATTGAAAAAGAATAAGATCCATAGATGGATCACATTCCACGGATTATATGATATCGGGTATCTGTTGCAAGCGATGGGGTTCGTGGAGTTTCCGGAATTGATGGAAGAATTTGCTGGGATGGTTGCGAACAAGGTCGGGATTGTGAGGGACTTGAAGCACATGGCTCGATTCTGCGAAGGGTTGGAGGATGGGAGGATTGGGCTAGAGAGATTGGGGGAATTGATGCAACAAAAAAGGTTTGGAATGAAACACCATGCTGGTTCAGATAGCTTGTTGTGTGCTTGTATTCATACAAAGATGATTGAATTGTATGCTATGGAATCAAGTATTTGTGATGGGTATTTGTATGGAATCTCAACTAGAATTCAGTTCAAGTATATAATGTTTGGAACCCTTATGTTTAGTCAAATGTCATCATCAATTCCACTTAGTGAGTGA

Protein sequence

MGGGNRARSRRGKLWIREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKLIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLSTFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFVEFPELMEEFAGMVANKVGIVRDLKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKMIELYAMESSICDGYLYGISTRIQFKYIMFGTLMFSQMSSSIPLSE

Homology

[Close]

BLAST of Sed0000812 vs. NCBI nr
Match: KAG6604931.1 (putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027010.1 putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.9 bits (943), Expect = 8.3e-98
Identity = 180/285 (63.16%), Postives = 221/285 (77.54%), Query Frame = 0


Query: 1   MGGGNRARSRRGKLWIREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSID 60
           MG  NRAR RR    I+EVWASN  HEI  L++CLQ   ILSIDTEFPG IRSTPWGSID
Sbjct: 1   MGRRNRARPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSID 60

Query: 61  QQLYEDLRFNVTKTKLIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNG 120
           +++YEDLRFNV +TKLIQLGLTA DE G V G WEFNFSDFD + D  NPSSI FL+QNG
Sbjct: 61  ERVYEDLRFNVNQTKLIQLGLTASDESGQVVGSWEFNFSDFDHQIDTQNPSSISFLEQNG 120

Query: 121 HDFEKMKTKGIPLSTFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFV-EFPELMEE 180
            DF K+K +GIPLS FT +F R+++++++ +W+TFHGLYDIGYL++AMG   E PE MEE
Sbjct: 121 LDFAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEE 180

Query: 181 FAGMVANKVGIVRDLKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACI 240
           FA MVA  VG+VRDLK +AR+CEGLE GR+GLERLGEL+ +KRFGMKHHAGSDSLL A +
Sbjct: 181 FAEMVARGVGVVRDLKEVARWCEGLEQGRVGLERLGELLGEKRFGMKHHAGSDSLLTAFV 240

Query: 241 HTKMIELYAMESSICDGYLYGISTRIQFKYIMFGTLMFSQMSSSI 285
           H KM   + +ES   DG+LYG+  +++   +   T+MF Q+S S+
Sbjct: 241 HAKMARWFRLESGAYDGHLYGLQNKLEHMKVN-QTIMFGQISCSL 284

[Close]

BLAST of Sed0000812 vs. NCBI nr
Match: XP_022947867.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 364.4 bits (934), Expect = 9.1e-97
Identity = 174/268 (64.93%), Postives = 211/268 (78.73%), Query Frame = 0


Query: 1   MGGGNRARSRRGKLWIREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSID 60
           MG  NR R RR    I+EVWASN  HEI  L++CLQ   ILSIDTEFPG IRSTPWGSID
Sbjct: 1   MGRRNRERPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSID 60

Query: 61  QQLYEDLRFNVTKTKLIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNG 120
           +++YEDLRFNV +TKLIQLGLTA DE G V G WEFNFSDFD + D  NPSSI FL+QNG
Sbjct: 61  ERVYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSIAFLEQNG 120

Query: 121 HDFEKMKTKGIPLSTFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFV-EFPELMEE 180
            DF K+K +GIPLS FT +F R+++++++ +W+TFHGLYDIGYL++AMG   E PE MEE
Sbjct: 121 LDFAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEE 180

Query: 181 FAGMVANKVGIVRDLKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACI 240
           FA MVA  VG+VRDLK +AR+CEGLE GR+GLERLGEL+ +KRFGMKHHAGSDSLL A +
Sbjct: 181 FAEMVARGVGVVRDLKEVARWCEGLEQGRVGLERLGELLGEKRFGMKHHAGSDSLLTAFV 240

Query: 241 HTKMIELYAMESSICDGYLYGISTRIQF 268
           H KM   + +ES   DG+LYG+  ++Q+
Sbjct: 241 HAKMARWFRLESEAYDGHLYGLRNKLQY 268

[Close]

BLAST of Sed0000812 vs. NCBI nr
Match: XP_038895744.1 (putative CCR4-associated factor 1 homolog 8 [Benincasa hispida])

HSP 1 Score: 360.5 bits (924), Expect = 1.3e-95
Identity = 176/290 (60.69%), Postives = 222/290 (76.55%), Query Frame = 0


Query: 3   GGNRARSRRGKLWIREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQ 62
           G NR R    K  I +VWASN   EIS+L++CL+ + I+SIDTEFPGFIR++PWGSID+ 
Sbjct: 2   GENRIR----KSLIHKVWASNFDAEISKLEECLEFHTIVSIDTEFPGFIRNSPWGSIDET 61

Query: 63  LYEDLRFNVTKTKLIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHD 122
           LYED RFNV +TKLIQLGLTA D+ G +GG WEFNFSDFD E DA +PSS  FL+QNG D
Sbjct: 62  LYEDFRFNVNQTKLIQLGLTACDDSGKIGGSWEFNFSDFDPEIDAQSPSSASFLEQNGLD 121

Query: 123 FEKMKTKGIPLSTFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFVE-FPELMEEFA 182
           F K+K  GIP++ FT  FV +++K+ + RW+TFHGLYDIGYL++AMG  E  PE MEEFA
Sbjct: 122 FNKLKKYGIPINLFTAKFVHIIRKHNVFRWVTFHGLYDIGYLIKAMGITEVLPETMEEFA 181

Query: 183 GMVANKVGIVRDLKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHT 242
            +V  ++GIVRDLKHMARFCEGLEDG++GLERLG+L+ QKR+G+KH+AGSDSLL A  H 
Sbjct: 182 TVVVRRLGIVRDLKHMARFCEGLEDGKLGLERLGKLLDQKRYGLKHNAGSDSLLTASAHF 241

Query: 243 KMIELYAMESSICDGYLYGISTRIQFKYI---MF--GTLMFSQMSSSIPL 287
           +MI+ + M++ ICDGYLYG S ++Q   I   MF    + F Q+  +IPL
Sbjct: 242 EMIQRFDMDAEICDGYLYGFSNKLQSMDINMNMFHRKIITFGQIPYAIPL 287

[Close]

BLAST of Sed0000812 vs. NCBI nr
Match: XP_022146113.1 (putative CCR4-associated factor 1 homolog 8 [Momordica charantia])

HSP 1 Score: 357.8 bits (917), Expect = 8.5e-95
Identity = 168/281 (59.79%), Postives = 213/281 (75.80%), Query Frame = 0


Query: 1   MGGGNRARSRRGKLWIREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSID 60
           MG G R  SRRG   IREVW+ N   E++ L+ CL  Y IL+IDTEFPGFIRSTPWG+I+
Sbjct: 1   MGRGKRGHSRRGNAQIREVWSRNFDLELANLNDCLNLYPILTIDTEFPGFIRSTPWGAIE 60

Query: 61  QQLYEDLRFNVTKTKLIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNG 120
           ++LY+D RFNV +TKLIQLGLTA DE+GN+G  WEFNFSDFD + D HN SS+ FLKQNG
Sbjct: 61  EKLYDDFRFNVNRTKLIQLGLTASDEIGNIGSTWEFNFSDFDPQIDTHNASSVSFLKQNG 120

Query: 121 HDFEKMKTKGIPLSTFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFV-EFPELMEE 180
            DF+K+K  GIP++ FT+    + +K++I RW+TFHGLYDIGYLL+AMG   E PE MEE
Sbjct: 121 LDFDKLKEFGIPINEFTSKAFFLFRKHRIVRWVTFHGLYDIGYLLKAMGVAGEIPESMEE 180

Query: 181 FAGMVANKVGIVRDLKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACI 240
           FA +V   +G V DLKHMA+FCEGLEDG++GLE+L +LM QKRFG KHHAGSDSLL A +
Sbjct: 181 FAELVERALGNVSDLKHMAQFCEGLEDGKLGLEKLAQLMNQKRFGNKHHAGSDSLLTASL 240

Query: 241 HTKMIELYAMESSICDGYLYGISTRIQFKYIMFGTLMFSQM 281
           + KM   + + S +CDG+LYG+  ++  K  ++  LMF Q+
Sbjct: 241 YAKMKNQFELGSEVCDGFLYGLRIKLHAKIKLYQNLMFGQI 281

[Close]

BLAST of Sed0000812 vs. NCBI nr
Match: KAG6604930.1 (putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350.5 bits (898), Expect = 1.4e-92
Identity = 160/252 (63.49%), Postives = 198/252 (78.57%), Query Frame = 0


Query: 16  IREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTK 75
           IREVWA N+ HEI  LD+CL  Y ++SIDTEFPG I+ TPWG+ID++LY D RFNV +TK
Sbjct: 15  IREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDEELYADFRFNVNQTK 74

Query: 76  LIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLST 135
           +IQLG+T  DELGN+GG WEFNFSDFD E DAHNP+SI FLKQNG DF K+K  GI +  
Sbjct: 75  VIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRK 134

Query: 136 FTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFVE-FPELMEEFAGMVANKVGIVRDL 195
           F   F+  L+K+ I+RWITFHGLYDIGYL+ AMG V+  PE + EF  +VA +VG VRDL
Sbjct: 135 FAIRFIYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEFEWIVARRVGTVRDL 194

Query: 196 KHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKMIELYAMESSIC 255
           KHMARFCEGLE G +GLE+LG+L+ QKRFG+KHHAGSDSL+ A +H KM++ Y   + IC
Sbjct: 195 KHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKMLQRYDFHAEIC 254

Query: 256 DGYLYGISTRIQ 267
           DG+LYG+S + +
Sbjct: 255 DGFLYGLSKKFE 266

[Close]

BLAST of Sed0000812 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-45
Identity = 95/247 (38.46%), Postives = 140/247 (56.68%), Query Frame = 0


Query: 17  REVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKL 76
           R VW SN+  E++ + +CL+ + +++ DTE+PG I  T + S   + Y  ++ NV  TKL
Sbjct: 10  RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKL 69

Query: 77  IQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPL--S 136
           IQ G T  +  G +GG+WE NFS+F    D  N  SI FL+++G D +K++ +G+ +   
Sbjct: 70  IQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGY 129

Query: 137 TFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFVEFPELMEEFAGMVANKVGIVRDL 196
            F    + V +  K   ++TF G YD  Y L  +   + PE   EFA  V    G V D 
Sbjct: 130 GFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDT 189

Query: 197 KHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKMIELYAMESSIC 256
           K MA FCEGL +  +GL +L +L+Q  R G  HHAGSDSL+ A +  K+  +Y  +S   
Sbjct: 190 KVMAGFCEGLGE-HLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-DSRFA 249

Query: 257 DGYLYGI 262
            G +YGI
Sbjct: 250 RGLIYGI 254

[Close]

BLAST of Sed0000812 vs. ExPASy Swiss-Prot
Match: O64773 (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-44
Identity = 96/229 (41.92%), Postives = 136/229 (59.39%), Query Frame = 0


Query: 18  EVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKLI 77
           EVW  N + E++ +  CL+H   ++IDTEFPG ++ TP  + D+  Y D++FNV  T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 78  QLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLSTFT 137
           QLGLT   +   +   WE N SDF+      N  SI FLK NG D +K++ +GI +  F 
Sbjct: 64  QLGLTLFGK--GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 138 TDFVRVL-KKNKIHRWITFHGLYDIGYLLQAMGFVEFPELMEEFAGMVANKVG-IVRDLK 197
            +F ++L +K+   RW+TF G YD  YLL+ +     PE  +EF   V   +G  V D+K
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVK 183

Query: 198 HMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKMI 245
            MA  C GL   R GL+R+ +++Q +R G  HHAGSDS L A + TK+I
Sbjct: 184 KMAGLCSGL-SSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLI 229

[Close]

BLAST of Sed0000812 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-44
Identity = 96/223 (43.05%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 28  ISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKLIQLGLTALDEL 87
           +S ++ CL+ YR ++IDTEFP  +R T   + D++ Y D+ F+V + KLIQLGLT  D  
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 88  GNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLSTFTTDFVRVLKKN 147
           G +GG WE NFSDF  + DA N  SI FL++NG D  K++ +GI +  F ++   +LKK 
Sbjct: 61  GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 148 KIH-RWITFHGLYDIGYLLQAMGFVEFPELMEEFAGMVANKVGIVRDLKHMARFCEGLED 207
           + +  W+TFHG YDI YLL+       P   E F+  VA  +G V DLK MA  CEGL  
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL-S 180

Query: 208 GRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKMIELYAM 250
            R+GLE L       R G  HHAGS++ L A +  K++  + +
Sbjct: 181 SRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPFPL 221

[Close]

BLAST of Sed0000812 vs. ExPASy Swiss-Prot
Match: Q9C6M9 (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=CAF1-4 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.0e-42
Identity = 95/229 (41.48%), Postives = 132/229 (57.64%), Query Frame = 0


Query: 18  EVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKLI 77
           EVW  N   E+  +  CL+H+  ++IDTEFPG ++ TP  + ++  Y D++FNV  T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 78  QLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLSTFT 137
           QLG T  D  G +   WE N SDF+      N  SI FLK NG + +K+  +GI +  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 138 TDFVRVLK-KNKIHRWITFHGLYDIGYLLQAM-GFVEFPELMEEFAGMVANKVG-IVRDL 197
            DF ++LK K+    W+ F G YD  YL++ + G    PE  EEF   V   +G  V D+
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 198 KHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKM 244
           K +A  C GL   R GL+R+ +++Q KR G  HHAGSDS L A + TK+
Sbjct: 183 KKIAESCSGL-SSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229

[Close]

BLAST of Sed0000812 vs. ExPASy Swiss-Prot
Match: Q9SFX6 (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=CAF1-3 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-41
Identity = 96/230 (41.74%), Postives = 132/230 (57.39%), Query Frame = 0


Query: 18  EVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKLI 77
           EVW  N   E++ +  CL+H   ++IDTEFPG ++ TP  + ++  Y D++FNV  T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 78  QLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLSTFT 137
           QLG T  D  G     WE N SDFD      N  SI FLK NG + +K++ +GI +  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 138 TDFVRVL--KKNKIHRWITFHGLYDIGYLLQAM-GFVEFPELMEEFAGMVANKVG-IVRD 197
            DF ++L  K  KI  W+ F G YD  YL++ + G    PE  EEF   V   +G  V D
Sbjct: 128 RDFSQILTEKDGKI-TWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFD 187

Query: 198 LKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKM 244
           +K +A  C GL   + GL+R+ +++Q KR G  HHAGSDS L A + TK+
Sbjct: 188 VKKIAESCSGL-SSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234

[Close]

BLAST of Sed0000812 vs. ExPASy TrEMBL
Match: A0A6J1G7L2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 4.4e-97
Identity = 174/268 (64.93%), Postives = 211/268 (78.73%), Query Frame = 0


Query: 1   MGGGNRARSRRGKLWIREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSID 60
           MG  NR R RR    I+EVWASN  HEI  L++CLQ   ILSIDTEFPG IRSTPWGSID
Sbjct: 1   MGRRNRERPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSID 60

Query: 61  QQLYEDLRFNVTKTKLIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNG 120
           +++YEDLRFNV +TKLIQLGLTA DE G V G WEFNFSDFD + D  NPSSI FL+QNG
Sbjct: 61  ERVYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSIAFLEQNG 120

Query: 121 HDFEKMKTKGIPLSTFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFV-EFPELMEE 180
            DF K+K +GIPLS FT +F R+++++++ +W+TFHGLYDIGYL++AMG   E PE MEE
Sbjct: 121 LDFAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEE 180

Query: 181 FAGMVANKVGIVRDLKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACI 240
           FA MVA  VG+VRDLK +AR+CEGLE GR+GLERLGEL+ +KRFGMKHHAGSDSLL A +
Sbjct: 181 FAEMVARGVGVVRDLKEVARWCEGLEQGRVGLERLGELLGEKRFGMKHHAGSDSLLTAFV 240

Query: 241 HTKMIELYAMESSICDGYLYGISTRIQF 268
           H KM   + +ES   DG+LYG+  ++Q+
Sbjct: 241 HAKMARWFRLESEAYDGHLYGLRNKLQY 268

[Close]

BLAST of Sed0000812 vs. ExPASy TrEMBL
Match: A0A6J1CXP9 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015407 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 4.1e-95
Identity = 168/281 (59.79%), Postives = 213/281 (75.80%), Query Frame = 0


Query: 1   MGGGNRARSRRGKLWIREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSID 60
           MG G R  SRRG   IREVW+ N   E++ L+ CL  Y IL+IDTEFPGFIRSTPWG+I+
Sbjct: 1   MGRGKRGHSRRGNAQIREVWSRNFDLELANLNDCLNLYPILTIDTEFPGFIRSTPWGAIE 60

Query: 61  QQLYEDLRFNVTKTKLIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNG 120
           ++LY+D RFNV +TKLIQLGLTA DE+GN+G  WEFNFSDFD + D HN SS+ FLKQNG
Sbjct: 61  EKLYDDFRFNVNRTKLIQLGLTASDEIGNIGSTWEFNFSDFDPQIDTHNASSVSFLKQNG 120

Query: 121 HDFEKMKTKGIPLSTFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFV-EFPELMEE 180
            DF+K+K  GIP++ FT+    + +K++I RW+TFHGLYDIGYLL+AMG   E PE MEE
Sbjct: 121 LDFDKLKEFGIPINEFTSKAFFLFRKHRIVRWVTFHGLYDIGYLLKAMGVAGEIPESMEE 180

Query: 181 FAGMVANKVGIVRDLKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACI 240
           FA +V   +G V DLKHMA+FCEGLEDG++GLE+L +LM QKRFG KHHAGSDSLL A +
Sbjct: 181 FAELVERALGNVSDLKHMAQFCEGLEDGKLGLEKLAQLMNQKRFGNKHHAGSDSLLTASL 240

Query: 241 HTKMIELYAMESSICDGYLYGISTRIQFKYIMFGTLMFSQM 281
           + KM   + + S +CDG+LYG+  ++  K  ++  LMF Q+
Sbjct: 241 YAKMKNQFELGSEVCDGFLYGLRIKLHAKIKLYQNLMFGQI 281

[Close]

BLAST of Sed0000812 vs. ExPASy TrEMBL
Match: A0A0A0LPP0 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.6e-91
Identity = 164/268 (61.19%), Postives = 209/268 (77.99%), Query Frame = 0


Query: 1   MGGGNRARSRRGKLWIREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSID 60
           MGG N+ RS R K  IR+VWASN   EI+  D+CL+ + IL+IDTEFPGFI  +P GSID
Sbjct: 1   MGGRNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSID 60

Query: 61  QQLYEDLRFNVTKTKLIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNG 120
            +LY+D  FNV +TKLIQLG+TA D+LG +GG WEFNFSDFD E DAH+P +I FL+ NG
Sbjct: 61  DELYKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNG 120

Query: 121 HDFEKMKTKGIPLSTFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFVE-FPELMEE 180
            D +KMK  GIP+++FT  F+ +L+K  I RW+TFHGLYDIGYL++AMG +   P+ MEE
Sbjct: 121 LDLKKMKKDGIPIASFTKKFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEE 180

Query: 181 FAGMVANKVGIVRDLKHMARFCEGLED-GRIGLERLGELMQQKRFGMKHHAGSDSLLCAC 240
           FA +V N+VGIVRDLKHMA+FCEGL+D GR+GLERLG+L+  KRFGMKH+AGSDSLL A 
Sbjct: 181 FATVVVNEVGIVRDLKHMAKFCEGLDDHGRLGLERLGKLLNLKRFGMKHNAGSDSLLTAS 240

Query: 241 IHTKMIELYAMESSICDGYLYGISTRIQ 267
            H +M+E + M S +C+G+LYG S  ++
Sbjct: 241 AHLEMVERFGMNSKVCNGFLYGFSETLE 268

[Close]

BLAST of Sed0000812 vs. ExPASy TrEMBL
Match: A0A6J1G7T4 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 4.7e-91
Identity = 158/252 (62.70%), Postives = 195/252 (77.38%), Query Frame = 0


Query: 16  IREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTK 75
           IREVWA N+ HEI  LD+CL  Y I+SIDTEFPG I+ TPWG+ D++LY D RFNV +TK
Sbjct: 15  IREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDEELYADFRFNVNQTK 74

Query: 76  LIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLST 135
           +IQLG+T  DE GN+GG WEFNFSDFD E DAHNP+SI FLKQNG DF K+K  GI +  
Sbjct: 75  VIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKDGIKVRK 134

Query: 136 FTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFVE-FPELMEEFAGMVANKVGIVRDL 195
           F   F+  L K+ I+RW+TFHGLYDIGYL+ AMG V+  PE + EF  +VA +VG VRDL
Sbjct: 135 FAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEFKWIVARRVGTVRDL 194

Query: 196 KHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKMIELYAMESSIC 255
           KHMARFCEGLE G +GLE+LG+L+ QKRFG+KHHAGSDSL+ A +H KM++ Y   + IC
Sbjct: 195 KHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKMLQRYDFHAEIC 254

Query: 256 DGYLYGISTRIQ 267
           DG+LYG+S + +
Sbjct: 255 DGFLYGLSKKFE 266

[Close]

BLAST of Sed0000812 vs. ExPASy TrEMBL
Match: A0A5A7TRG1 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001200 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.4e-90
Identity = 157/268 (58.58%), Postives = 214/268 (79.85%), Query Frame = 0


Query: 1   MGGGNRARSRRGKL-WIREVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSI 60
           MGG N+ RSRR K  +IR+VWASN   EI++ D+CL+ + IL+IDTEFPGFI  +P  SI
Sbjct: 1   MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSI 60

Query: 61  DQQLYEDLRFNVTKTKLIQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQN 120
           D+++Y++ RFNV + KLIQLG+TA ++ G +GG WEFNFSDFD + D+H+PS+I FL++N
Sbjct: 61  DEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKN 120

Query: 121 GHDFEKMKTKGIPLSTFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFVE-FPELME 180
           G DF+K+K  GIP+++FT  F+ +++K  I RW+TFHGLYDIGYL++AMG +   P+ ME
Sbjct: 121 GLDFKKLKKYGIPIASFTKKFLPIIQKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSME 180

Query: 181 EFAGMVANKVGIVRDLKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCAC 240
           EFA +V N+VGIVRDLKHMARFCEGLEDGR+GLERLG+++ +KRFGMKH+AGSDSLL A 
Sbjct: 181 EFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTAS 240

Query: 241 IHTKMIELYAMESSICDGYLYGISTRIQ 267
            H +M++ + M   +C+G+LYG S  ++
Sbjct: 241 AHFEMVKRFGMTYEVCNGFLYGFSESLE 268

[Close]

BLAST of Sed0000812 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-46
Identity = 95/247 (38.46%), Postives = 140/247 (56.68%), Query Frame = 0


Query: 17  REVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKL 76
           R VW SN+  E++ + +CL+ + +++ DTE+PG I  T + S   + Y  ++ NV  TKL
Sbjct: 10  RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKL 69

Query: 77  IQLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPL--S 136
           IQ G T  +  G +GG+WE NFS+F    D  N  SI FL+++G D +K++ +G+ +   
Sbjct: 70  IQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGY 129

Query: 137 TFTTDFVRVLKKNKIHRWITFHGLYDIGYLLQAMGFVEFPELMEEFAGMVANKVGIVRDL 196
            F    + V +  K   ++TF G YD  Y L  +   + PE   EFA  V    G V D 
Sbjct: 130 GFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDT 189

Query: 197 KHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKMIELYAMESSIC 256
           K MA FCEGL +  +GL +L +L+Q  R G  HHAGSDSL+ A +  K+  +Y  +S   
Sbjct: 190 KVMAGFCEGLGE-HLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-DSRFA 249

Query: 257 DGYLYGI 262
            G +YGI
Sbjct: 250 RGLIYGI 254

[Close]

BLAST of Sed0000812 vs. TAIR 10
Match: AT1G61470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 181.8 bits (460), Expect = 7.8e-46
Identity = 96/229 (41.92%), Postives = 136/229 (59.39%), Query Frame = 0


Query: 18  EVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKLI 77
           EVW  N + E++ +  CL+H   ++IDTEFPG ++ TP  + D+  Y D++FNV  T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 78  QLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLSTFT 137
           QLGLT   +   +   WE N SDF+      N  SI FLK NG D +K++ +GI +  F 
Sbjct: 64  QLGLTLFGK--GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 138 TDFVRVL-KKNKIHRWITFHGLYDIGYLLQAMGFVEFPELMEEFAGMVANKVG-IVRDLK 197
            +F ++L +K+   RW+TF G YD  YLL+ +     PE  +EF   V   +G  V D+K
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVK 183

Query: 198 HMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKMI 245
            MA  C GL   R GL+R+ +++Q +R G  HHAGSDS L A + TK+I
Sbjct: 184 KMAGLCSGL-SSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLI 229

[Close]

BLAST of Sed0000812 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 181.4 bits (459), Expect = 1.0e-45
Identity = 96/223 (43.05%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 28  ISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKLIQLGLTALDEL 87
           +S ++ CL+ YR ++IDTEFP  +R T   + D++ Y D+ F+V + KLIQLGLT  D  
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 88  GNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLSTFTTDFVRVLKKN 147
           G +GG WE NFSDF  + DA N  SI FL++NG D  K++ +GI +  F ++   +LKK 
Sbjct: 61  GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 148 KIH-RWITFHGLYDIGYLLQAMGFVEFPELMEEFAGMVANKVGIVRDLKHMARFCEGLED 207
           + +  W+TFHG YDI YLL+       P   E F+  VA  +G V DLK MA  CEGL  
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL-S 180

Query: 208 GRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKMIELYAM 250
            R+GLE L       R G  HHAGS++ L A +  K++  + +
Sbjct: 181 SRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPFPL 221

[Close]

BLAST of Sed0000812 vs. TAIR 10
Match: AT1G27890.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-43
Identity = 95/229 (41.48%), Postives = 132/229 (57.64%), Query Frame = 0


Query: 18  EVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKLI 77
           EVW  N   E+  +  CL+H+  ++IDTEFPG ++ TP  + ++  Y D++FNV  T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 78  QLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLSTFT 137
           QLG T  D  G +   WE N SDF+      N  SI FLK NG + +K+  +GI +  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 138 TDFVRVLK-KNKIHRWITFHGLYDIGYLLQAM-GFVEFPELMEEFAGMVANKVG-IVRDL 197
            DF ++LK K+    W+ F G YD  YL++ + G    PE  EEF   V   +G  V D+
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 198 KHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKM 244
           K +A  C GL   R GL+R+ +++Q KR G  HHAGSDS L A + TK+
Sbjct: 183 KKIAESCSGL-SSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229

[Close]

BLAST of Sed0000812 vs. TAIR 10
Match: AT1G27820.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 171.8 bits (434), Expect = 8.1e-43
Identity = 96/230 (41.74%), Postives = 132/230 (57.39%), Query Frame = 0


Query: 18  EVWASNIRHEISELDQCLQHYRILSIDTEFPGFIRSTPWGSIDQQLYEDLRFNVTKTKLI 77
           EVW  N   E++ +  CL+H   ++IDTEFPG ++ TP  + ++  Y D++FNV  T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 78  QLGLTALDELGNVGGIWEFNFSDFDSEFDAHNPSSILFLKQNGHDFEKMKTKGIPLSTFT 137
           QLG T  D  G     WE N SDFD      N  SI FLK NG + +K++ +GI +  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 138 TDFVRVL--KKNKIHRWITFHGLYDIGYLLQAM-GFVEFPELMEEFAGMVANKVG-IVRD 197
            DF ++L  K  KI  W+ F G YD  YL++ + G    PE  EEF   V   +G  V D
Sbjct: 128 RDFSQILTEKDGKI-TWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFD 187

Query: 198 LKHMARFCEGLEDGRIGLERLGELMQQKRFGMKHHAGSDSLLCACIHTKM 244
           +K +A  C GL   + GL+R+ +++Q KR G  HHAGSDS L A + TK+
Sbjct: 188 VKKIAESCSGL-SSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234

The following BLAST results are available for this feature:

BLAST of Sed0000812 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604931.1	8.3e-98	63.16	putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp....	[more]
XP_022947867.1	9.1e-97	64.93	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]
XP_038895744.1	1.3e-95	60.69	putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]	[more]
XP_022146113.1	8.5e-95	59.79	putative CCR4-associated factor 1 homolog 8 [Momordica charantia]	[more]
KAG6604930.1	1.4e-92	63.49	putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Sed0000812 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	1.7e-45	38.46	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
O64773	1.1e-44	41.92	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	1.4e-44	43.05	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9C6M9	3.0e-42	41.48	Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SFX6	1.1e-41	41.74	Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Sed0000812 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7L2	4.4e-97	64.93	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3...	[more]
A0A6J1CXP9	4.1e-95	59.79	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015407 PE=...	[more]
A0A0A0LPP0	1.6e-91	61.19	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV...	[more]
A0A6J1G7T4	4.7e-91	62.70	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3...	[more]
A0A5A7TRG1	1.4e-90	58.58	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Sed0000812 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	1.2e-46	38.46	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G61470.1	7.8e-46	41.92	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	1.0e-45	43.05	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27890.1	2.1e-43	41.48	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27820.1	8.1e-43	41.74	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 19..132 e-value: 8.3E-10 score: 38.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 5..264 e-value: 2.9E-64 score: 218.7
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 14..269
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 14..269
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000812.1	Sed0000812.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity