Sed0000741 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGAAACCTCTGCTCTCAAACCAAACCCACCGCCGTTGAATCTCCGCCGTCGAAACTCCATCACGGTCCCTGTCGTTGTTCCACCGAAATTAACCCTTTTCGCCGCCAAGCCCTCCGGCGGCCCCGCTGCATCGCCGCCGATGGCTTTTGAGCTCGTTCCGATCAAACCCTCTTCGTCCTCCCTTGCCTACACTTCTCTACGTGACATTTTGCCATCTGTCGCCGCCGTGAGCTCCCCCACCGCCGCCTCTGCTTTATATTCCGGCTACGAAATCTCCATCCGCAACCGCCTTGTGAAGCAGGCGGCGTGGGCATATCTTCAGCCCATGTCCACCTCTCCGAGCTCATCAGATCCCCGTCTCCTCCGCCGTATGTGGCGGCGATGTTCAACTTGTCTTAGCTTCCTCAACCTGCGTGTAGTTTCCACTGTAACAAAGGTTTTTGATCGAATCTTTCGCGTTGTGGGGTTCGGTTTTGTCTGA ATGGACGAAACCTCTGCTCTCAAACCAAACCCACCGCCGTTGAATCTCCGCCGTCGAAACTCCATCACGGTCCCTGTCGTTGTTCCACCGAAATTAACCCTTTTCGCCGCCAAGCCCTCCGGCGGCCCCGCTGCATCGCCGCCGATGGCTTTTGAGCTCGTTCCGATCAAACCCTCTTCGTCCTCCCTTGCCTACACTTCTCTACGTGACATTTTGCCATCTGTCGCCGCCGTGAGCTCCCCCACCGCCGCCTCTGCTTTATATTCCGGCTACGAAATCTCCATCCGCAACCGCCTTGTGAAGCAGGCGGCGTGGGCATATCTTCAGCCCATGTCCACCTCTCCGAGCTCATCAGATCCCCGTCTCCTCCGCCGTATGTGGCGGCGATGTTCAACTTGTCTTAGCTTCCTCAACCTGCGTGTAGTTTCCACTGTAACAAAGGTTTTTGATCGAATCTTTCGCGTTGTGGGGTTCGGTTTTGTCTGA ATGGACGAAACCTCTGCTCTCAAACCAAACCCACCGCCGTTGAATCTCCGCCGTCGAAACTCCATCACGGTCCCTGTCGTTGTTCCACCGAAATTAACCCTTTTCGCCGCCAAGCCCTCCGGCGGCCCCGCTGCATCGCCGCCGATGGCTTTTGAGCTCGTTCCGATCAAACCCTCTTCGTCCTCCCTTGCCTACACTTCTCTACGTGACATTTTGCCATCTGTCGCCGCCGTGAGCTCCCCCACCGCCGCCTCTGCTTTATATTCCGGCTACGAAATCTCCATCCGCAACCGCCTTGTGAAGCAGGCGGCGTGGGCATATCTTCAGCCCATGTCCACCTCTCCGAGCTCATCAGATCCCCGTCTCCTCCGCCGTATGTGGCGGCGATGTTCAACTTGTCTTAGCTTCCTCAACCTGCGTGTAGTTTCCACTGTAACAAAGGTTTTTGATCGAATCTTTCGCGTTGTGGGGTTCGGTTTTGTCTGA MDETSALKPNPPPLNLRRRNSITVPVVVPPKLTLFAAKPSGGPAASPPMAFELVPIKPSSSSLAYTSLRDILPSVAAVSSPTAASALYSGYEISIRNRLVKQAAWAYLQPMSTSPSSSDPRLLRRMWRRCSTCLSFLNLRVVSTVTKVFDRIFRVVGFGFV Homology
BLAST of Sed0000741 vs. NCBI nr
Match: XP_023539526.1 (uncharacterized protein LOC111800166 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 225.7 bits (574), Expect = 2.8e-55 Identity = 123/164 (75.00%), Postives = 134/164 (81.71%), Query Frame = 0
BLAST of Sed0000741 vs. NCBI nr
Match: XP_022957964.1 (uncharacterized protein LOC111459312 [Cucurbita moschata] >KAG6596601.1 hypothetical protein SDJN03_09781, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 222.2 bits (565), Expect = 3.1e-54 Identity = 122/164 (74.39%), Postives = 132/164 (80.49%), Query Frame = 0
BLAST of Sed0000741 vs. NCBI nr
Match: XP_023005655.1 (uncharacterized protein LOC111498593 [Cucurbita maxima]) HSP 1 Score: 221.9 bits (564), Expect = 4.1e-54 Identity = 121/164 (73.78%), Postives = 132/164 (80.49%), Query Frame = 0
BLAST of Sed0000741 vs. NCBI nr
Match: XP_008442897.1 (PREDICTED: uncharacterized protein LOC103486660 [Cucumis melo] >KAA0043832.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa] >TYK25301.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa]) HSP 1 Score: 218.0 bits (554), Expect = 5.9e-53 Identity = 127/168 (75.60%), Postives = 135/168 (80.36%), Query Frame = 0
BLAST of Sed0000741 vs. NCBI nr
Match: XP_023526406.1 (uncharacterized protein LOC111789917 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 209.1 bits (531), Expect = 2.7e-50 Identity = 122/167 (73.05%), Postives = 135/167 (80.84%), Query Frame = 0
BLAST of Sed0000741 vs. ExPASy TrEMBL
Match: A0A6J1H3M0 (uncharacterized protein LOC111459312 OS=Cucurbita moschata OX=3662 GN=LOC111459312 PE=4 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54 Identity = 122/164 (74.39%), Postives = 132/164 (80.49%), Query Frame = 0
BLAST of Sed0000741 vs. ExPASy TrEMBL
Match: A0A6J1KY03 (uncharacterized protein LOC111498593 OS=Cucurbita maxima OX=3661 GN=LOC111498593 PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 2.0e-54 Identity = 121/164 (73.78%), Postives = 132/164 (80.49%), Query Frame = 0
BLAST of Sed0000741 vs. ExPASy TrEMBL
Match: A0A5A7TKK1 (Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004370 PE=4 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 2.9e-53 Identity = 127/168 (75.60%), Postives = 135/168 (80.36%), Query Frame = 0
BLAST of Sed0000741 vs. ExPASy TrEMBL
Match: A0A1S3B6B1 (uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=4 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 2.9e-53 Identity = 127/168 (75.60%), Postives = 135/168 (80.36%), Query Frame = 0
BLAST of Sed0000741 vs. ExPASy TrEMBL
Match: A0A6J1F639 (uncharacterized protein LOC111442465 OS=Cucurbita moschata OX=3662 GN=LOC111442465 PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 1.7e-50 Identity = 122/166 (73.49%), Postives = 136/166 (81.93%), Query Frame = 0
BLAST of Sed0000741 vs. TAIR 10
Match: AT5G06280.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11 Identity = 61/158 (38.61%), Postives = 85/158 (53.80%), Query Frame = 0
BLAST of Sed0000741 vs. TAIR 10
Match: AT5G06280.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11 Identity = 61/158 (38.61%), Postives = 85/158 (53.80%), Query Frame = 0
BLAST of Sed0000741 vs. TAIR 10
Match: AT3G52520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09 Identity = 51/118 (43.22%), Postives = 67/118 (56.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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