Sed0000724 (gene) Chayote v1

Overview


Name	Sed0000724
Type	gene
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase RNF126-like
Location	LG05: 45249865 .. 45250539 (+)
RNA-Seq Expression	Sed0000724
Synteny	Sed0000724

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCCGGTTCAACAACGACACAATGTCGCTTCGATATTCGTTGAAAAGCAACCGCAACCTCACCGCGGCTCCCGATCAGCAACCACTACAGTTTCTGGAGCTTCGATTGGGGAATGCCAGCGATCTAATCTGCCAATCTTCGCACGAAATCATCCAACGAAGCCCGTCGACTTTATTCGCCGATGCGCTGCTCCCGTTCCATCTCCGCGACCTGAAAGCCCCGCCATTGGTCTCGAAATTCCTCCTCGCTCGCTATCTTAACGCCTTCAACCTCTCCATTGGCTTCTCCAACTTCCTCTTCGACAGGGTTGCCGCCTTCGCCCACGACCTAACCGCGGGCAACCTCGATCTCAACTTCCACATCATTGCGTCTGTGGATTTCGTGGAGGCCATATGGATCGACCTGGAGCCTCCTTCGCCCTTGGATTATTCTCCGAGTTGCACGGCGGCTCCCGGTTCGGCGATTCGGAGGCTGATGGATCAGAAGTTTGATGGACTTGGCGCTGATGAACACGGCGATTGTAGCGTTTGTTGCGATGAGCTTCATGATTGCGCTGAAAAGGAGGTGATTAGAATCCCCTGCGGTCACGTGTTCCACAAGTCATGTATTGTTCATTGGCTTCTCATGCGTAATTCTTGTCCTCTGTGCAGAACCAAATTGGAAGATTAA

mRNA sequence

ATGTCTTTCCGGTTCAACAACGACACAATGTCGCTTCGATATTCGTTGAAAAGCAACCGCAACCTCACCGCGGCTCCCGATCAGCAACCACTACAGTTTCTGGAGCTTCGATTGGGGAATGCCAGCGATCTAATCTGCCAATCTTCGCACGAAATCATCCAACGAAGCCCGTCGACTTTATTCGCCGATGCGCTGCTCCCGTTCCATCTCCGCGACCTGAAAGCCCCGCCATTGGTCTCGAAATTCCTCCTCGCTCGCTATCTTAACGCCTTCAACCTCTCCATTGGCTTCTCCAACTTCCTCTTCGACAGGGTTGCCGCCTTCGCCCACGACCTAACCGCGGGCAACCTCGATCTCAACTTCCACATCATTGCGTCTGTGGATTTCGTGGAGGCCATATGGATCGACCTGGAGCCTCCTTCGCCCTTGGATTATTCTCCGAGTTGCACGGCGGCTCCCGGTTCGGCGATTCGGAGGCTGATGGATCAGAAGTTTGATGGACTTGGCGCTGATGAACACGGCGATTGTAGCGTTTGTTGCGATGAGCTTCATGATTGCGCTGAAAAGGAGGTGATTAGAATCCCCTGCGGTCACGTGTTCCACAAGTCATGTATTGTTCATTGGCTTCTCATGCGTAATTCTTGTCCTCTGTGCAGAACCAAATTGGAAGATTAA

Coding sequence (CDS)

ATGTCTTTCCGGTTCAACAACGACACAATGTCGCTTCGATATTCGTTGAAAAGCAACCGCAACCTCACCGCGGCTCCCGATCAGCAACCACTACAGTTTCTGGAGCTTCGATTGGGGAATGCCAGCGATCTAATCTGCCAATCTTCGCACGAAATCATCCAACGAAGCCCGTCGACTTTATTCGCCGATGCGCTGCTCCCGTTCCATCTCCGCGACCTGAAAGCCCCGCCATTGGTCTCGAAATTCCTCCTCGCTCGCTATCTTAACGCCTTCAACCTCTCCATTGGCTTCTCCAACTTCCTCTTCGACAGGGTTGCCGCCTTCGCCCACGACCTAACCGCGGGCAACCTCGATCTCAACTTCCACATCATTGCGTCTGTGGATTTCGTGGAGGCCATATGGATCGACCTGGAGCCTCCTTCGCCCTTGGATTATTCTCCGAGTTGCACGGCGGCTCCCGGTTCGGCGATTCGGAGGCTGATGGATCAGAAGTTTGATGGACTTGGCGCTGATGAACACGGCGATTGTAGCGTTTGTTGCGATGAGCTTCATGATTGCGCTGAAAAGGAGGTGATTAGAATCCCCTGCGGTCACGTGTTCCACAAGTCATGTATTGTTCATTGGCTTCTCATGCGTAATTCTTGTCCTCTGTGCAGAACCAAATTGGAAGATTAA

Protein sequence

MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTLFADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLNFHIIASVDFVEAIWIDLEPPSPLDYSPSCTAAPGSAIRRLMDQKFDGLGADEHGDCSVCCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLED

Homology

[Close]

BLAST of Sed0000724 vs. NCBI nr
Match: XP_022947840.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata])

HSP 1 Score: 235.7 bits (600), Expect = 3.8e-58
Identity = 118/224 (52.68%), Postives = 158/224 (70.54%), Query Frame = 0


Query: 1   MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTL 60
           MS  F  D++S + S ++N   T A  +QP+QF+ELRLG++S LI +SS +I+Q++PST 
Sbjct: 1   MSLTF-GDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTP 60

Query: 61  FADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLN 120
             DAL PF LRDL  PP +SK  + R+L++F++ I   N +F  +++FA  L AGN+DLN
Sbjct: 61  MGDALFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVDLN 120

Query: 121 FHIIASVDFVEAIWIDLEPPSPLDYS-PSCTAAPGSAIRRLMDQKFDGLGADEHGDCSVC 180
           FHI+  VD +E IW+DL+P    +YS P+   AP SAI RL  Q+FDGL  +E G+CSVC
Sbjct: 121 FHIVVDVDAIEMIWVDLDPFLIEEYSPPAMNGAPASAIERLQRQEFDGLREEEEGECSVC 180

Query: 181 CDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
           C+ L    E+EV RIPCGHV+HK CI+ WL M NSCPLCRTKLE
Sbjct: 181 CEALK--GEEEVSRIPCGHVYHKCCILRWLQMSNSCPLCRTKLE 221

[Close]

BLAST of Sed0000724 vs. NCBI nr
Match: KAG6605221.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.4 bits (594), Expect = 1.9e-57
Identity = 117/225 (52.00%), Postives = 160/225 (71.11%), Query Frame = 0


Query: 1   MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTL 60
           MS  F +D +S + S++S  N T A DQQP+Q LELRLGN++ LI +SS +I+Q++P+T 
Sbjct: 1   MSLTF-HDYLSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTP 60

Query: 61  FADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLN 120
             DAL PF LRDL+ PP +S   + ++L++F++ I   + +++ +++FA  L AGN+DLN
Sbjct: 61  MGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLN 120

Query: 121 FHIIASVDFVEAIWIDLEPPSPLDYSPS-CTAAPGSAIRRLMDQKFDGL-GADEHGDCSV 180
           FHI+  VD +E IW+DL+P    +YSP+    AP SAI RL  Q+FDGL   +E GDCSV
Sbjct: 121 FHIVVEVDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLRDEEEEGDCSV 180

Query: 181 CCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
           CC+ L    E+EV RIPCGHV+HK CI+ WL M NSCPLCRTKLE
Sbjct: 181 CCEALK--GEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 222

[Close]

BLAST of Sed0000724 vs. NCBI nr
Match: XP_022947933.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 2.5e-57
Identity = 117/225 (52.00%), Postives = 160/225 (71.11%), Query Frame = 0


Query: 1   MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTL 60
           MS  F +D +S + S++S  N T A DQQP+Q LELRLGN++ LI +SS +I+Q++P+T 
Sbjct: 1   MSLTF-HDYLSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTP 60

Query: 61  FADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLN 120
             DAL PF LRDL+ PP +S   + ++L++F++ I   + +++ +++FA  L AGN+DLN
Sbjct: 61  MGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLN 120

Query: 121 FHIIASVDFVEAIWIDLEPPSPLDYSPS-CTAAPGSAIRRLMDQKFDGL-GADEHGDCSV 180
           FHI+  VD +E IW+DL+P    +YSP+    AP SAI RL  Q+FDGL   +E GDCSV
Sbjct: 121 FHIVVEVDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSV 180

Query: 181 CCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
           CC+ L    E+EV RIPCGHV+HK CI+ WL M NSCPLCRTKLE
Sbjct: 181 CCEALK--GEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 222

[Close]

BLAST of Sed0000724 vs. NCBI nr
Match: XP_023533113.1 (RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-56
Identity = 118/225 (52.44%), Postives = 156/225 (69.33%), Query Frame = 0


Query: 1   MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTL 60
           MS  F  D++S + S ++N     A  +QP+QF+ELRLG++S LI +SS +I+Q++PST 
Sbjct: 1   MSLTF-GDSLSFQCSFRTNTTGNLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTP 60

Query: 61  FADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLN 120
             DAL PF LRDL  PP +SK  + R+L++F + I   N +F  +++FA  L AGN+DLN
Sbjct: 61  MGDALFPFILRDLLDPPFLSKSHVLRFLSSFTIPIAVCNIIFAEISSFALHLAAGNVDLN 120

Query: 121 FHIIASVDFVEAIWIDLEPPSPLDYSPSC-TAAPGSAIRRLMDQKFDGLGADE-HGDCSV 180
           FHI+  VD +E IW+DL+P    +YSP+    AP SAI RL  QKFDGL  +E  GDCSV
Sbjct: 121 FHIVVDVDAIEMIWVDLDPFLIEEYSPAAMNGAPASAIERLQRQKFDGLREEEKEGDCSV 180

Query: 181 CCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
           CC+ L    E+EV RIPCGHV+HK CI+ WL M NSCPLCRT+LE
Sbjct: 181 CCEALK--GEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLE 222

[Close]

BLAST of Sed0000724 vs. NCBI nr
Match: XP_023006826.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima])

HSP 1 Score: 228.8 bits (582), Expect = 4.7e-56
Identity = 117/225 (52.00%), Postives = 158/225 (70.22%), Query Frame = 0


Query: 1   MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTL 60
           MS  F +D +S + S++S  N T A  QQP+Q LELRLG+++ LI +SS +I+Q++PST 
Sbjct: 1   MSLTF-HDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTP 60

Query: 61  FADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLN 120
             DAL PF LRDL+ PP +S   + ++L++F++ I   + +++ +++FA  L AGN+DLN
Sbjct: 61  IGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLN 120

Query: 121 FHIIASVDFVEAIWIDLEPPSPLDYSPS-CTAAPGSAIRRLMDQKFDGL-GADEHGDCSV 180
           FHI+  VD  E IW+DL+P    +YSP+    AP SAI RL  QKFDGL   +E GDCSV
Sbjct: 121 FHIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSV 180

Query: 181 CCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
           CC+ L    E+EV RIPCGHV+HK CI+ WL M NSCPLCRTKLE
Sbjct: 181 CCEALK--GEEEVSRIPCGHVYHKFCILKWLQMSNSCPLCRTKLE 222

[Close]

BLAST of Sed0000724 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-08
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 172 EHGDCSVCCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKL 223
           E   C+VC DE  D    +V ++PC HVFH+ C++ WL + NSCP+CR +L
Sbjct: 212 EMNQCAVCMDEFED--GSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

[Close]

BLAST of Sed0000724 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-08
Identity = 25/69 (36.23%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 156 AIRRLMDQKFDGLGADEHGD--CSVCCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRN 215
           A++   D  F+ L  D+  D  C +C D++++  EK+  ++PCGH+F K+C+  WL    
Sbjct: 86  AVKEAWD-SFEPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHC 145

Query: 216 SCPLCRTKL 223
           +CPLCR ++
Sbjct: 146 TCPLCRKEV 153

[Close]

BLAST of Sed0000724 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 28/71 (39.44%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 152 APGSAIRRLMDQKFDGLGADEHGDCSVCCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLM 211
           A  SAI  L   +          +C+VC +      E E   +PC H+FH  CIV WL +
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVCTEIFE--TETEAREMPCKHLFHDDCIVPWLSI 234

Query: 212 RNSCPLCRTKL 223
           RNSCP+CR +L
Sbjct: 235 RNSCPVCRFEL 243

[Close]

BLAST of Sed0000724 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-07
Identity = 31/76 (40.79%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 152 APGSAIRRLMDQKFDGLGADEH-----GDCSVCCDELHDCAEKEVIRIPCGHVFHKSCIV 211
           AP SAI  L   K     A  H      +C VC DE       E  ++PC H++H  CIV
Sbjct: 165 APRSAIDALPTIKI----AQRHLRSSDSNCPVCKDEFE--LGSEAKQMPCNHIYHSDCIV 224

Query: 212 HWLLMRNSCPLCRTKL 223
            WL+  NSCP+CR +L
Sbjct: 225 PWLVQHNSCPVCRQEL 234

[Close]

BLAST of Sed0000724 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07
Identity = 20/49 (40.82%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 176 CSVCCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLED 225
           CS+C D+     ++ V ++PC H++H++CIV WL + ++CP+CR  L D
Sbjct: 253 CSICWDDFK--IDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLAD 299

[Close]

BLAST of Sed0000724 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.8e-58
Identity = 118/224 (52.68%), Postives = 158/224 (70.54%), Query Frame = 0


Query: 1   MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTL 60
           MS  F  D++S + S ++N   T A  +QP+QF+ELRLG++S LI +SS +I+Q++PST 
Sbjct: 1   MSLTF-GDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTP 60

Query: 61  FADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLN 120
             DAL PF LRDL  PP +SK  + R+L++F++ I   N +F  +++FA  L AGN+DLN
Sbjct: 61  MGDALFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVDLN 120

Query: 121 FHIIASVDFVEAIWIDLEPPSPLDYS-PSCTAAPGSAIRRLMDQKFDGLGADEHGDCSVC 180
           FHI+  VD +E IW+DL+P    +YS P+   AP SAI RL  Q+FDGL  +E G+CSVC
Sbjct: 121 FHIVVDVDAIEMIWVDLDPFLIEEYSPPAMNGAPASAIERLQRQEFDGLREEEEGECSVC 180

Query: 181 CDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
           C+ L    E+EV RIPCGHV+HK CI+ WL M NSCPLCRTKLE
Sbjct: 181 CEALK--GEEEVSRIPCGHVYHKCCILRWLQMSNSCPLCRTKLE 221

[Close]

BLAST of Sed0000724 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.2e-57
Identity = 117/225 (52.00%), Postives = 160/225 (71.11%), Query Frame = 0


Query: 1   MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTL 60
           MS  F +D +S + S++S  N T A DQQP+Q LELRLGN++ LI +SS +I+Q++P+T 
Sbjct: 1   MSLTF-HDYLSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTP 60

Query: 61  FADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLN 120
             DAL PF LRDL+ PP +S   + ++L++F++ I   + +++ +++FA  L AGN+DLN
Sbjct: 61  MGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLN 120

Query: 121 FHIIASVDFVEAIWIDLEPPSPLDYSPS-CTAAPGSAIRRLMDQKFDGL-GADEHGDCSV 180
           FHI+  VD +E IW+DL+P    +YSP+    AP SAI RL  Q+FDGL   +E GDCSV
Sbjct: 121 FHIVVEVDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSV 180

Query: 181 CCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
           CC+ L    E+EV RIPCGHV+HK CI+ WL M NSCPLCRTKLE
Sbjct: 181 CCEALK--GEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 222

[Close]

BLAST of Sed0000724 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 117/225 (52.00%), Postives = 158/225 (70.22%), Query Frame = 0


Query: 1   MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTL 60
           MS  F +D +S + S++S  N T A  QQP+Q LELRLG+++ LI +SS +I+Q++PST 
Sbjct: 1   MSLTF-HDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTP 60

Query: 61  FADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLN 120
             DAL PF LRDL+ PP +S   + ++L++F++ I   + +++ +++FA  L AGN+DLN
Sbjct: 61  IGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLN 120

Query: 121 FHIIASVDFVEAIWIDLEPPSPLDYSPS-CTAAPGSAIRRLMDQKFDGL-GADEHGDCSV 180
           FHI+  VD  E IW+DL+P    +YSP+    AP SAI RL  QKFDGL   +E GDCSV
Sbjct: 121 FHIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSV 180

Query: 181 CCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
           CC+ L    E+EV RIPCGHV+HK CI+ WL M NSCPLCRTKLE
Sbjct: 181 CCEALK--GEEEVSRIPCGHVYHKFCILKWLQMSNSCPLCRTKLE 222

[Close]

BLAST of Sed0000724 vs. ExPASy TrEMBL
Match: A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.9e-55
Identity = 111/225 (49.33%), Postives = 158/225 (70.22%), Query Frame = 0


Query: 1   MSFRFNNDTMSLRYSLKSNRNLTAAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTL 60
           MS  F  D++S ++S+++N   T A  + P+QF+ELRLG++S LI +SS +I+Q+SPST 
Sbjct: 1   MSLTF-GDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTP 60

Query: 61  FADALLPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLN 120
             ++L PF LRDL+ PP +  + +  +L++F++ +   + ++  +++FA  LTA N+DLN
Sbjct: 61  LGESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLN 120

Query: 121 FHIIASVDFVEAIWIDLEPPSPLDYS-PSCTAAPGSAIRRLMDQKFDGL-GADEHGDCSV 180
           FHI+  VD +E IW+DL+P    +YS P+   AP SAI RL  QKFDGL   +E GDCSV
Sbjct: 121 FHIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSV 180

Query: 181 CCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
           CC+ L    E+EV RIPCGHV+HK CI+ WL + NSCPLCRTKLE
Sbjct: 181 CCEALR--GEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLE 222

[Close]

BLAST of Sed0000724 vs. ExPASy TrEMBL
Match: A0A6J1ES83 (uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC111435504 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 4.3e-55
Identity = 110/218 (50.46%), Postives = 153/218 (70.18%), Query Frame = 0


Query: 8   DTMSLRYSLKSN-RNLT-AAPDQQPLQFLELRLGNASDLICQSSHEIIQRSPSTLFADAL 67
           +T+SL+Y + ++ RN T  A D QP+Q+ ELRL  ++  + +SS++++Q++P TL +DAL
Sbjct: 70  NTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLISDAL 129

Query: 68  LPFHLRDLKAPPLVSKFLLARYLNAFNLSIGFSNFLFDRVAAFAHDLTAGNLDLNFHIIA 127
           LP  LRDL+ PP +S FL+ ++L+ FN+S   S+ +FD +A FA +L AG+LD NFHII 
Sbjct: 130 LPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNFHIIV 189

Query: 128 SVDFVEAIWIDLEPPSPLDYSPSCTAAPGSAIRRLMDQKFDGLGADEHGDCSVCCDELHD 187
            +D V+ IW+DL+    L+  P    AP S + RLM ++FDG   +E  DCSVCCDEL  
Sbjct: 190 YLDLVQTIWVDLDLDLDLEMPPKQEPAPASVMERLMREEFDGFRPEEARDCSVCCDELG- 249

Query: 188 CAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKLE 224
             E EV R+PCGHVFHKSCI+ WL + NSCPLCR KLE
Sbjct: 250 -GETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLE 285

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BLAST of Sed0000724 vs. TAIR 10
Match: AT5G37270.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-10
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 147 PSCTAAPGSAIRRLMDQ---KFDGLGADEHGDCSVCCDELHDCAEKEVIRIP-CGHVFHK 206
           PS         +RL+++   +F  LG +E   CS+C ++  +  +  +I +P C H+FH+
Sbjct: 121 PSIAVPSRDMFQRLLEEQTMEFTDLGDEEETTCSICLEDFSESHDDNIILLPDCFHLFHQ 180

Query: 207 SCIVHWLLMRNSCPLCR 220
           SCI  WL  + SCPLCR
Sbjct: 181 SCIFEWLKRQRSCPLCR 197

[Close]

BLAST of Sed0000724 vs. TAIR 10
Match: AT4G12140.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-10
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 150 TAAPGSAIRRLMDQKFDGLGA--DEHGDCSVCCDELHDCAEKEVIRIPCGHVFHKSCIVH 209
           T++  S + RL   K + L +   E   CS+C   L   ++    R+ C HVFH SC+V 
Sbjct: 125 TSSKESRMVRLGSMKAEELKSFNMETDSCSICLQSLVSSSKTGPTRMSCSHVFHSSCLVE 184

Query: 210 WLLMRNSCPLCRTKLED 225
           WL  +N+CP+CRT L D
Sbjct: 185 WLKRKNTCPMCRTVLYD 201

[Close]

BLAST of Sed0000724 vs. TAIR 10
Match: AT5G37230.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09
Identity = 27/77 (35.06%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 147 PSCTAAPGSAIRRLMDQ---KFDGLGADEHGDCSVCCDELHDCAEKEVIRIP-CGHVFHK 206
           PS         +RL+++   +   LG +E   CS+C ++  +  +  +I +P C H+FH+
Sbjct: 121 PSIVVRSRDMFQRLLEEQTMELTNLGDEEETTCSICMEDFSESHDDNIILLPDCFHLFHQ 180

Query: 207 SCIVHWLLMRNSCPLCR 220
           SCI  WL  + SCPLCR
Sbjct: 181 SCIFKWLKRQRSCPLCR 197

[Close]

BLAST of Sed0000724 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-09
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 159 RLMDQKFDGLGADEHGDCSVCCDELHDCAE-KEVIRIPCGHVFHKSCIVHWLLMRNSCPL 218
           R+  ++F  L   E   CS+C + L    + ++V R+ C HVFH  C++ WL  +N+CPL
Sbjct: 141 RMKAEEFKSLKM-ETEPCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPL 200

Query: 219 CRTKLED 225
           CRT++ D
Sbjct: 201 CRTEIYD 206

[Close]

BLAST of Sed0000724 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-09
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 172 EHGDCSVCCDELHDCAEKEVIRIPCGHVFHKSCIVHWLLMRNSCPLCRTKL 223
           E   C+VC DE  D    +V ++PC HVFH+ C++ WL + NSCP+CR +L
Sbjct: 212 EMNQCAVCMDEFED--GSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

The following BLAST results are available for this feature:

BLAST of Sed0000724 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947840.1	3.8e-58	52.68	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]	[more]
KAG6605221.1	1.9e-57	52.00	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022947933.1	2.5e-57	52.00	E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ...	[more]
XP_023533113.1	1.6e-56	52.44	RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023006826.1	4.7e-56	52.00	E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima]	[more]

BLAST of Sed0000724 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPN7	6.4e-08	47.06	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9Y7K6	8.4e-08	36.23	Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strai...	[more]
Q940T5	1.4e-07	39.44	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
O22197	1.9e-07	40.79	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q9VHI7	3.2e-07	40.82	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]

BLAST of Sed0000724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G809	1.8e-58	52.68	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1G7Z5	1.2e-57	52.00	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KYV1	2.3e-56	52.00	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499...	[more]
A0A6J1L387	1.9e-55	49.33	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE...	[more]
A0A6J1ES83	4.3e-55	50.46	uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]

BLAST of Sed0000724 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37270.1	3.2e-10	36.36	RING/U-box superfamily protein	[more]
AT4G12140.1	4.1e-10	38.96	RING/U-box superfamily protein	[more]
AT5G37230.1	1.6e-09	35.06	RING/U-box superfamily protein	[more]
AT4G05350.1	2.7e-09	38.81	RING/U-box superfamily protein	[more]
AT3G19950.1	4.6e-09	47.06	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 176..218 e-value: 3.9E-6 score: 36.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 175..219 e-value: 9.3E-11 score: 41.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 176..219 score: 13.005633
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 155..224 e-value: 2.1E-16 score: 60.9
None	No IPR available	PANTHER	PTHR45931	SI:CH211-59O9.10	coord: 87..223
None	No IPR available	PANTHER	PTHR45931:SF9	E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKE	coord: 87..223
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 175..219 e-value: 2.78923E-15 score: 65.4009
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 170..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000724.1	Sed0000724.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity