Sed0000674 (gene) Chayote v1

Overview


Name	Sed0000674
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	LG14: 7545620 .. 7548196 (+)
RNA-Seq Expression	Sed0000674
Synteny	Sed0000674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATCTTGCAAACAGCTAACAGCCCACCTAATCATACAAAACAACCAAATAGGATATCATCGGCCAACATCCCAAAGTTCCAAATTGTTGGATTAAATATCAAAACTTCCAATACATAACAAAGTACAATCGCATAGTGCTCAAAGAGAGTATTATCGTAATAGAAGTGATAGGTTCAATATATGGTGATCACGTATGTGGTAGTAATTAATTTCCTACAAGTTATCTAAATGGTATAGAGTCAGCCAGTATGTTTCTACAACATTAGTGGAGGTGCACGCAACCTGATTCGAAAATTAATTTAGAAACGTTGGAAACTCCAAAACTAAGCAAGACCCACAAAAGAAATACACCCCAAAAGGGACAAAACAGAGAAATATGTTAGTGGACACAGGATTAAAAAGTGGAACAGAGTAATTTACTTTAATAATTTGTATGCAGTGAAGGAAACAAACACACAATTGTAAAAAAAAAAGTAGAAGAAATTGACCTAAAAAGATTAGTTTAGTTTAGAAACCAAGAAACGGACTGGTTTGGCTCGGCTTTAGAACACGGCGGCGCTAGGTTTGGCCATTTGTAGAGCCTAAAGGGCGTGTTTGGCATGGGATTATGTTAACCCTTGTTTGGTGGCAGGGTTCCCATATTCCGGATTAAGTTTGTACTAAACTCGAAGAGAAAGTAAGTTGGGGCGAAATGTGGGAGATCATCGGTTATCGCCGAAGTGAGTAATTGTATTGGCGATTTCGCCGAGAAGCTCTTCGATTGCATCCCTTTTCCGGCGAATTTGATCGGAGTTTTCGTTGGTCTCTCATTTTGCCATGGATTCATCGCAGAAGACAAGTATTCAAGCTGGGTTGCCGTTCCAAAGTATTCAGCAACTTCTCCAAACCAATTCTTGTGCATTTCAAGGTATTTGGTTGTTTACATCTAACTTATGGCTCTACGGCTCTTTGCTTGCTCAATTTGCATGAATTTATATATATATATATATATATATATGTATGGGTCTACTTGCACTCACCTCGATTATTCACCTGAAGCTGAAATATACTGGTCTTACTCTACCAGGTTTGGATGTTAAAGAAACCTCATCATGGATTCAATCAATAATGGTTCATTCGCCTAATTGATTGAAACTTGCAAGAATATTTGTTTTTGAGAATTTACCACTGCCGCACATTCTACCTCTTGTATTATACGTGCAGTAAATTTTTTAAAATAATTCATCTATAAGCAAATTGATTTCTATCACTCAACTAGTGATAAAACTCAATTTGGATTTCTATCACTGATAGAAAACTCAAGCAGTGATAGAATGAGTCTCTCAAACAATGATAGAATGAGTCTCTCAAACAATGATAGAATGAATCTCTCATTGATAGAATTTTATCAATCAGTGATAGAATGAGTCTATCATTGATTGAATTCTATCACTAATAGAACTCAATTTAAATTTTCTGCCACAAATGAATTAATTTTGATTTTGTGCTATACATGGAAATACTTTACTCTTTTTTATTATACATGCAAAATCCCCTTTGTTTTTTTTAAGTAAAACAAACATTTGTGACAAATGCCATAGTGTAAGATTATATCAACCCCACATTATCTTGAATGAAAACTTCTGCAATCAGTATTCAATTTCATTAGCATTTAGGAATCGCAACTAGACGTCAAACTAAGCTCTTTTAAATGTTTTTGATTTTGTATTGAATGGAATCACATGGTTGTAACTTGTAAGTGTATAGTTATGCATTTGTAGTTGCTTTATGTTGTGGCCTTGAGAATAATGTCAAAATTCCTGGATGTAGCAGGGGCATTCTTCAGCTGCAGATATTCATAAGCGGCGAAGAACTTTTGAATCTCTGTTTTGCTATGATAAGGCTATCCCGGAGGAAAGAATTGAGACGCCGGTTGGAATAAGAGGATAGGAGACAATCCCTGTTGTACTGATTGTCATGCCAAAGTGTTGTCCTTTGCACAACTTGCTCTGGTTCGGGTTTGTATGTCGACTCAATAATGGAGAGCCAGGGAATCATTGTGAAAGTTCGTTGCCTCGGTAAAATTACATGTCTTCTTTAACCATTAGTATTAGCAACATTTAGAAATGGTTCTAATAATGTGCACCTTTTATTTTGACCTTGTCAGCTTGTTACTTATCTATTTTGGACGCTGTATTATAATTATAATGTTCAACTTCTGTTCTTTTGATAAGTTCAATTATTGGTGTGACCAGTGTGGATGTTTAGCTTTGAAAGCAGAAAAGAAGTCAACAGGATAATAGATGGAGTTTCTTCCTGTGTAATTATTTTCATATATTTTGAATTTTTTTTAAAAAGGGATGTTGGAAATTGTGTGAGCTTTTGAAATATACTAGAGGTTGCCTTTTATCGTGTGCATTTGATTCAAATATAGTAGAGGTTTTTTTTGTTTCGTCTCTGTTAGTTCTGTATGTTCAGTTCTCAAATTAGTTACGGAAAAGTTTTTGTCCTGACTGTAATCATGGTCGTTTAAGGTTGTGGTGGAACTGGCAATACAATGTGTTCGGAATGTGGCGGTCGCAGTCACCTGTGA

mRNA sequence

ATGATATCTTGCAAACAGCTAACAGCCCACCTAATCATACAAAACAACCAAATAGGATATCATCGGCCAACATCCCAAACTGCAGATATTCATAAGCGGCGAAGAACTTTTGAATCTCTGTTTTGCTATGATAAGGCTATCCCGGAGGAAAGAATTGAGACTGTTGTCCTTTGCACAACTTGCTCTGGTTCGGGTTTGTATGTCGACTCAATAATGGAGAGCCAGGGAATCATTGTGAAAGTTCGTTGCCTCGGTTGTGGTGGAACTGGCAATACAATGTGTTCGGAATGTGGCGGTCGCAGTCACCTGTGA

Coding sequence (CDS)

ATGATATCTTGCAAACAGCTAACAGCCCACCTAATCATACAAAACAACCAAATAGGATATCATCGGCCAACATCCCAAACTGCAGATATTCATAAGCGGCGAAGAACTTTTGAATCTCTGTTTTGCTATGATAAGGCTATCCCGGAGGAAAGAATTGAGACTGTTGTCCTTTGCACAACTTGCTCTGGTTCGGGTTTGTATGTCGACTCAATAATGGAGAGCCAGGGAATCATTGTGAAAGTTCGTTGCCTCGGTTGTGGTGGAACTGGCAATACAATGTGTTCGGAATGTGGCGGTCGCAGTCACCTGTGA

Protein sequence

MISCKQLTAHLIIQNNQIGYHRPTSQTADIHKRRRTFESLFCYDKAIPEERIETVVLCTTCSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL

Homology

[Close]

BLAST of Sed0000674 vs. NCBI nr
Match: XP_022925028.1 (uncharacterized protein LOC111432397 [Cucurbita moschata])

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-29
Identity = 70/106 (66.04%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 22  RPTSQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVL 81
           R  S  AD+H+RR T E+LFCYDKAIPEERIET                         VL
Sbjct: 52  RGDSSGADVHRRRSTSETLFCYDKAIPEERIETPVGISLAEKMIGDNPRCSECHAKGAVL 111

Query: 82  CTTCSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CTTCSGSGLYVDSI+ESQGIIVKVRCLGCGGTGNTMCSECGGR HL
Sbjct: 112 CTTCSGSGLYVDSILESQGIIVKVRCLGCGGTGNTMCSECGGRGHL 157

[Close]

BLAST of Sed0000674 vs. NCBI nr
Match: XP_023518477.1 (uncharacterized protein LOC111781959 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-29
Identity = 70/106 (66.04%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 22  RPTSQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVL 81
           R  S  AD+H+RR T E+LFCYDKAIPEERIET                         VL
Sbjct: 52  RGDSSGADVHRRRSTSETLFCYDKAIPEERIETPVGISLAEKMIGDNPRCTECHAKGAVL 111

Query: 82  CTTCSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CTTCSGSGLYVDSI+ESQGIIVKVRCLGCGGTGNTMCSECGGR HL
Sbjct: 112 CTTCSGSGLYVDSILESQGIIVKVRCLGCGGTGNTMCSECGGRGHL 157

[Close]

BLAST of Sed0000674 vs. NCBI nr
Match: XP_038881865.1 (uncharacterized protein LOC120073222 isoform X1 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 3.8e-29
Identity = 69/103 (66.99%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 25  SQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVLCTT 84
           S  AD+H+RR +FESLFCYDKAIPEERIET                        VVLC T
Sbjct: 56  SSPADVHRRRSSFESLFCYDKAIPEERIETPVGISLAERMIGDNPRCTDCHAKGVVLCAT 115

Query: 85  CSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CSGSGLYVDSI+ESQGIIVKVRCLGCGGTGN MCSECGGR HL
Sbjct: 116 CSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHL 158

[Close]

BLAST of Sed0000674 vs. NCBI nr
Match: XP_038881866.1 (uncharacterized protein LOC120073222 isoform X2 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 3.8e-29
Identity = 69/103 (66.99%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 25  SQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVLCTT 84
           S  AD+H+RR +FESLFCYDKAIPEERIET                        VVLC T
Sbjct: 55  SSPADVHRRRSSFESLFCYDKAIPEERIETPVGISLAERMIGDNPRCTDCHAKGVVLCAT 114

Query: 85  CSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CSGSGLYVDSI+ESQGIIVKVRCLGCGGTGN MCSECGGR HL
Sbjct: 115 CSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHL 157

[Close]

BLAST of Sed0000674 vs. NCBI nr
Match: KAG6595468.1 (hypothetical protein SDJN03_12021, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 8.5e-29
Identity = 68/103 (66.02%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 25  SQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVLCTT 84
           S  AD+H+RR T E+LFCYDKAIPEERIET                         V+CTT
Sbjct: 55  SSGADVHRRRSTSETLFCYDKAIPEERIETPVGISLAEKMIGDNPRCSECHAKGAVICTT 114

Query: 85  CSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CSGSGLYVDSI+ESQGIIVKVRCLGCGGTGNTMCSECGGR HL
Sbjct: 115 CSGSGLYVDSILESQGIIVKVRCLGCGGTGNTMCSECGGRGHL 157

[Close]

BLAST of Sed0000674 vs. ExPASy TrEMBL
Match: A0A6J1EE35 (uncharacterized protein LOC111432397 OS=Cucurbita moschata OX=3662 GN=LOC111432397 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.4e-29
Identity = 70/106 (66.04%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 22  RPTSQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVL 81
           R  S  AD+H+RR T E+LFCYDKAIPEERIET                         VL
Sbjct: 52  RGDSSGADVHRRRSTSETLFCYDKAIPEERIETPVGISLAEKMIGDNPRCSECHAKGAVL 111

Query: 82  CTTCSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CTTCSGSGLYVDSI+ESQGIIVKVRCLGCGGTGNTMCSECGGR HL
Sbjct: 112 CTTCSGSGLYVDSILESQGIIVKVRCLGCGGTGNTMCSECGGRGHL 157

[Close]

BLAST of Sed0000674 vs. ExPASy TrEMBL
Match: A0A5D3C2E7 (Protein EMBRYO SAC DEVELOPMENT ARREST 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00210 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.1e-29
Identity = 68/103 (66.02%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 25  SQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVLCTT 84
           S  AD+H+RR +FESLFCYDKAIPEERIET                         VLC T
Sbjct: 12  SSAADVHRRRSSFESLFCYDKAIPEERIETPIGISLAEKMIGNNPRCTDCQAKGAVLCAT 71

Query: 85  CSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CSGSGLYVDSI+ESQGIIVKVRCLGCGGTGN MCSECGGR HL
Sbjct: 72  CSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHL 114

[Close]

BLAST of Sed0000674 vs. ExPASy TrEMBL
Match: A0A0A0L441 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G580370 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.1e-29
Identity = 68/103 (66.02%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 25  SQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVLCTT 84
           S  AD+H+RR +FESLFCYDKAIPEERIET                         VLC T
Sbjct: 55  SSAADVHRRRSSFESLFCYDKAIPEERIETPIGISLAEKMIGNNPRCTDCQAKGAVLCAT 114

Query: 85  CSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CSGSGLYVDSI+ESQGIIVKVRCLGCGGTGN MCSECGGR HL
Sbjct: 115 CSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHL 157

[Close]

BLAST of Sed0000674 vs. ExPASy TrEMBL
Match: A0A6J1DNW0 (uncharacterized protein LOC111021761 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021761 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.1e-29
Identity = 68/103 (66.02%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 25  SQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVLCTT 84
           S  AD+H+RR TFESLFCYDKAIPEERIE                          VLCTT
Sbjct: 59  SSAADVHRRRSTFESLFCYDKAIPEERIEKPVGISLAEKIIGDNPRCTDCHAKGAVLCTT 118

Query: 85  CSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CSGSGLYVD+I+ESQGIIVKVRCLGCGGTGN MCSECGGR HL
Sbjct: 119 CSGSGLYVDAILESQGIIVKVRCLGCGGTGNIMCSECGGRGHL 161

[Close]

BLAST of Sed0000674 vs. ExPASy TrEMBL
Match: A0A6J1DJS1 (uncharacterized protein LOC111021761 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021761 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.1e-29
Identity = 68/103 (66.02%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 25  SQTADIHKRRRTFESLFCYDKAIPEERIET------------------------VVLCTT 84
           S  AD+H+RR TFESLFCYDKAIPEERIE                          VLCTT
Sbjct: 60  SSAADVHRRRSTFESLFCYDKAIPEERIEKPVGISLAEKIIGDNPRCTDCHAKGAVLCTT 119

Query: 85  CSGSGLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           CSGSGLYVD+I+ESQGIIVKVRCLGCGGTGN MCSECGGR HL
Sbjct: 120 CSGSGLYVDAILESQGIIVKVRCLGCGGTGNIMCSECGGRGHL 162

[Close]

BLAST of Sed0000674 vs. TAIR 10
Match: AT5G17840.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 7.2e-26
Identity = 56/99 (56.57%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 29  DIHKRRRTFESLFCYDKAIPEERIETVV------------------------LCTTCSGS 88
           D+H++R + ES+FCYDK IPEE IE  V                        LC+TCSG+
Sbjct: 54  DVHRQRSSLESMFCYDKPIPEEIIEEPVGLSMSEREIGDNQRCTCCEAKGALLCSTCSGT 113

Query: 89  GLYVDSIMESQGIIVKVRCLGCGGTGNTMCSECGGRSHL 104
           GLYVDSIMESQGIIVKVRCLGCGG+GN MC  CGGR H+
Sbjct: 114 GLYVDSIMESQGIIVKVRCLGCGGSGNIMCKLCGGRGHV 152

The following BLAST results are available for this feature:

BLAST of Sed0000674 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925028.1	2.9e-29	66.04	uncharacterized protein LOC111432397 [Cucurbita moschata]	[more]
XP_023518477.1	2.9e-29	66.04	uncharacterized protein LOC111781959 [Cucurbita pepo subsp. pepo]	[more]
XP_038881865.1	3.8e-29	66.99	uncharacterized protein LOC120073222 isoform X1 [Benincasa hispida]	[more]
XP_038881866.1	3.8e-29	66.99	uncharacterized protein LOC120073222 isoform X2 [Benincasa hispida]	[more]
KAG6595468.1	8.5e-29	66.02	hypothetical protein SDJN03_12021, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0000674 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0000674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EE35	1.4e-29	66.04	uncharacterized protein LOC111432397 OS=Cucurbita moschata OX=3662 GN=LOC1114323...	[more]
A0A5D3C2E7	4.1e-29	66.02	Protein EMBRYO SAC DEVELOPMENT ARREST 3 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0L441	4.1e-29	66.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G580370 PE=4 SV=1	[more]
A0A6J1DNW0	4.1e-29	66.02	uncharacterized protein LOC111021761 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DJS1	4.1e-29	66.02	uncharacterized protein LOC111021761 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Sed0000674 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17840.1	7.2e-26	56.57	DnaJ/Hsp40 cysteine-rich domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852:SF13	DNAJ/HSP40 CYSTEINE-RICH DOMAIN SUPERFAMILY PROTEIN	coord: 56..101 coord: 25..54
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 56..101 coord: 25..54
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 54..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000674.1	Sed0000674.1	mRNA