Sed0000656 (gene) Chayote v1

Overview


Name	Sed0000656
Type	gene
Organism	Sechium edule (Chayote v1)
Description	UPF0057 membrane protein
Location	LG11: 4399478 .. 4401089 (+)
RNA-Seq Expression	Sed0000656
Synteny	Sed0000656

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAAAGTGATAGCAAAATTAAAATAACAAAGGAAGAAAACTATTGAAAAATGGATCTGTCACAGAAATCAAAATCAAAATCACTTCCTTCCACAGCTCTCTCCGATCTCTCTGGTTGAACTTCGAAAATGGCGAACGGCTGTGAGATCTTCTGCGAAATTCTCATCGCCATCCTCCTTCCTCCGCTCGGAGTCTGCCTCAAGCACGGCTGTTGCACGGTAATCTCCTTACCTTTTTCTTCTTCTTAATCGGAACTTCCGGTGACCTTAAACAGCCGGCGAAATGATCTGATCTGAATTAGCTTTTGATTTCGTTCTGATTTTGTTTTGGAATTGGTTTCGGTAATCTCCTTCAACTCTTCTTCGATCTTTCTCTCTGTAATTTAGAGCATGAGAACATACAGTATTAGAACATTAATGTTAGTGTTATTCTAACAAATCGGAACTTCCAGCGACCTAAAACAGCCAGCGAAATGATCTGATCTGAATTAGGTTTTGATTTCGATCTAGTTTTGTTTCGGAATTGCCTCAAATTCTTCTTCTTCTTCTTCTATCTTTCTCTCTGTAATTTCTCCCAATCTGCACTTCCAGTGCCGAAACAATCTGATCCGATCGGCATTAGGTTTTGGTTTTGGTTTCAGTCTAATTTTGTTTTGGAATTGGTTTCGGTAATCTCCTTAAATGTTCTTCTTCGTCTATCTTAATCTGTAATTTTCCCCAAATCTGAACTTCCAGTGACCTAAAACAGCCGAAAAAACGATCCGATTGGAATTTGGTTTTGGTTTCGGTCTAATTTTGTTGTTCCTCTTCTTCTTGAACTTCTACTGACCTGAAACGGCCGGCGAAACGATTGGATCGGAATCAGGCTTCGATTTCGGTCACGTTTTTTTGTTCGTCTTCTTCTTGAACTTCTAGCGACCTAAAACGTCCGGCAAAGCGATCTGATCGGAACTAGGTTTGAAACAGCCGCCGAAACGATCTGATCGGAAGTAGGTTTTGTTTCGGTCTAACTCTGTTGTTGTTCTTCTTCTTCTTCTTGAACTTCCAGCCGCCAAAAACGGCCGGCGAAACGATCTGATCGGAATCAGGTTTAAAACAGCCGAAAAAACGATCTGATCGGAATTAGGATTTGGTTTCTGCTCTTCTTCTTGAACTTCCAGTGATCTAAAACGGCCGGCGAAACGATCTGATAGGAATTAGGTTTTGGTTTCAGGTAGAGTTTTGTATCTGTTTGATTTTGACTCTGCTGGGTTACATTCCGGGGATCATCTACGCTCTGTACGCCATTGTTTTCGTGGATCGCGATCAGTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCGGTTGACGGAGGTGTAGAACCACTTTGAATCTCTTTCTTTGATCTGTTTTACTTTTTGGAATAAGGTTTTTTATTGTTTTGGTTGAACTTTTGTTGCTTTTGGATTTGAACTGGATTTGTTGTACTAGATTTTTTAAGCCTTTCCCCTAATTGTTATGTTCTTTTTGGATTTTTAGATTTTTTTTTTTTTTTTCATAGAGCTTTTAGAAAATTAATTCCATACCAGTTGTTTGACAATGTAAGTAAAAATTCAAAATGACCACTTAAAT

mRNA sequence

CAAGAAAGTGATAGCAAAATTAAAATAACAAAGGAAGAAAACTATTGAAAAATGGATCTGTCACAGAAATCAAAATCAAAATCACTTCCTTCCACAGCTCTCTCCGATCTCTCTGGTTGAACTTCGAAAATGGCGAACGGCTGTGAGATCTTCTGCGAAATTCTCATCGCCATCCTCCTTCCTCCGCTCGGAGTCTGCCTCAAGCACGGCTGTTGCACGGTAGAGTTTTGTATCTGTTTGATTTTGACTCTGCTGGGTTACATTCCGGGGATCATCTACGCTCTGTACGCCATTGTTTTCGTGGATCGCGATCAGTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCGGTTGACGGAGGTGTAGAACCACTTTGAATCTCTTTCTTTGATCTGTTTTACTTTTTGGAATAAGGTTTTTTATTGTTTTGGTTGAACTTTTGTTGCTTTTGGATTTGAACTGGATTTGTTGTACTAGATTTTTTAAGCCTTTCCCCTAATTGTTATGTTCTTTTTGGATTTTTAGATTTTTTTTTTTTTTTTCATAGAGCTTTTAGAAAATTAATTCCATACCAGTTGTTTGACAATGTAAGTAAAAATTCAAAATGACCACTTAAAT

Coding sequence (CDS)

ATGGCGAACGGCTGTGAGATCTTCTGCGAAATTCTCATCGCCATCCTCCTTCCTCCGCTCGGAGTCTGCCTCAAGCACGGCTGTTGCACGGTAGAGTTTTGTATCTGTTTGATTTTGACTCTGCTGGGTTACATTCCGGGGATCATCTACGCTCTGTACGCCATTGTTTTCGTGGATCGCGATCAGTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCGGTTGACGGAGGTGTAG

Protein sequence

MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDRDQFFDEYRRPLYSRLTEV

Homology

[Close]

BLAST of Sed0000656 vs. NCBI nr
Match: XP_022938010.1 (UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >XP_022938011.1 UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >KAG6586050.1 UPF0057 membrane protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020827.1 UPF0057 membrane protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MANGCEIFCEILIAIL+PPLGVCLKHGCCTVEFC+CLILTLLGYIPGIIYALY+IVFVDR
Sbjct: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          D FFDEYRRPLYS +  V
Sbjct: 61 DHFFDEYRRPLYSPVPTV 78

[Close]

BLAST of Sed0000656 vs. NCBI nr
Match: XP_022946545.1 (UPF0057 membrane protein At2g24040-like [Cucurbita moschata] >XP_022999789.1 UPF0057 membrane protein At2g24040-like [Cucurbita maxima] >XP_023523032.1 UPF0057 membrane protein At2g24040-like [Cucurbita pepo subsp. pepo] >XP_023546587.1 UPF0057 membrane protein At2g24040-like [Cucurbita pepo subsp. pepo] >KAG6599143.1 UPF0057 membrane protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030086.1 UPF0057 membrane protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MANGCEI CEILIAIL+PPLGVCLKHGCCTVEFC+CLILTLLGYIPGIIYALYAIV+VDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          DQFFDEYRRPLYS+ + V
Sbjct: 61 DQFFDEYRRPLYSQASAV 78

[Close]

BLAST of Sed0000656 vs. NCBI nr
Match: XP_022158160.1 (UPF0057 membrane protein At2g24040-like [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MANGCEI CEILIAIL+PPLGVCLKHGCCTVEFC+CLILTLLGY+PGIIYALYAIVFVDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYVPGIIYALYAIVFVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          DQFFDEYRRPLY+ ++ V
Sbjct: 61 DQFFDEYRRPLYAPVSAV 78

[Close]

BLAST of Sed0000656 vs. NCBI nr
Match: XP_022969587.1 (UPF0057 membrane protein At4g30660-like [Cucurbita maxima] >XP_022969588.1 UPF0057 membrane protein At4g30660-like [Cucurbita maxima])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MAN CEIFCEILIAIL+PPLGVCLKHGCCTVEFC+CLILTLLGYIPGIIYALY+IVFVDR
Sbjct: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          D FFDEYRRPLYS +  V
Sbjct: 61 DHFFDEYRRPLYSPVPTV 78

[Close]

BLAST of Sed0000656 vs. NCBI nr
Match: XP_038890692.1 (UPF0057 membrane protein At4g30660-like [Benincasa hispida])

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-31
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MANGCEI CEILIAIL+PPLGVCLK GCCTVEFC+CLILTLLGYIPGIIYALYAIVFVDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKFGCCTVEFCLCLILTLLGYIPGIIYALYAIVFVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          DQFFDEYRRPLY+  + V
Sbjct: 61 DQFFDEYRRPLYAPASTV 78

[Close]

BLAST of Sed0000656 vs. ExPASy Swiss-Prot
Match: O82232 (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-27
Identity = 55/72 (76.39%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MA+ CE+ CEI IAILLPP+GVCL+HGCCTVEF ICLILT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DQFFDEYRRPLY 73
          D++FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of Sed0000656 vs. ExPASy Swiss-Prot
Match: Q9SUI0 (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-26
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          M + CEI CEI+IAILLPPLGVC + GCCTVEF ICL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DQFFDEYRRPLYS 74
          +++FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of Sed0000656 vs. ExPASy Swiss-Prot
Match: Q9M095 (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-21
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MA+  E+FCEILIAILLPPLGVCLK GCCTVEF ICL+LT+LGYIPGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

[Close]

BLAST of Sed0000656 vs. ExPASy Swiss-Prot
Match: Q9LRI7 (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.1e-18
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MANG-CEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVD 60
          MA+G C  F EIL+AI+LPPLGV L+ GCC++EFCICL+LT+LGY+PGIIYA+Y +V +D
Sbjct: 1  MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALD 60

Query: 61 RDQFFDEY 68
           DQ+  EY
Sbjct: 61 SDQYQREY 68

[Close]

BLAST of Sed0000656 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 8  FCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAI 56
          F +I+IAILLPPLGV L+ G C VEF ICL+LTLLGYIPGIIYA+Y +
Sbjct: 6  FVDIIIAILLPPLGVFLRFG-CGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of Sed0000656 vs. ExPASy TrEMBL
Match: A0A6J1FBZ3 (UPF0057 membrane protein At4g30660-like OS=Cucurbita moschata OX=3662 GN=LOC111444230 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.9e-33
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MANGCEIFCEILIAIL+PPLGVCLKHGCCTVEFC+CLILTLLGYIPGIIYALY+IVFVDR
Sbjct: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          D FFDEYRRPLYS +  V
Sbjct: 61 DHFFDEYRRPLYSPVPTV 78

[Close]

BLAST of Sed0000656 vs. ExPASy TrEMBL
Match: A0A6J1KI35 (UPF0057 membrane protein At2g24040-like OS=Cucurbita maxima OX=3661 GN=LOC111494032 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.9e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MANGCEI CEILIAIL+PPLGVCLKHGCCTVEFC+CLILTLLGYIPGIIYALYAIV+VDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          DQFFDEYRRPLYS+ + V
Sbjct: 61 DQFFDEYRRPLYSQASAV 78

[Close]

BLAST of Sed0000656 vs. ExPASy TrEMBL
Match: A0A6J1G463 (UPF0057 membrane protein At2g24040-like OS=Cucurbita moschata OX=3662 GN=LOC111450578 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.9e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MANGCEI CEILIAIL+PPLGVCLKHGCCTVEFC+CLILTLLGYIPGIIYALYAIV+VDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          DQFFDEYRRPLYS+ + V
Sbjct: 61 DQFFDEYRRPLYSQASAV 78

[Close]

BLAST of Sed0000656 vs. ExPASy TrEMBL
Match: A0A6J1DV17 (UPF0057 membrane protein At2g24040-like OS=Momordica charantia OX=3673 GN=LOC111024708 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MANGCEI CEILIAIL+PPLGVCLKHGCCTVEFC+CLILTLLGY+PGIIYALYAIVFVDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYVPGIIYALYAIVFVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          DQFFDEYRRPLY+ ++ V
Sbjct: 61 DQFFDEYRRPLYAPVSAV 78

[Close]

BLAST of Sed0000656 vs. ExPASy TrEMBL
Match: A0A6J1HWQ4 (UPF0057 membrane protein At4g30660-like OS=Cucurbita maxima OX=3661 GN=LOC111468565 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.7e-32
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MAN CEIFCEILIAIL+PPLGVCLKHGCCTVEFC+CLILTLLGYIPGIIYALY+IVFVDR
Sbjct: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60

Query: 61 DQFFDEYRRPLYSRLTEV 79
          D FFDEYRRPLYS +  V
Sbjct: 61 DHFFDEYRRPLYSPVPTV 78

[Close]

BLAST of Sed0000656 vs. TAIR 10
Match: AT4G28088.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 137.1 bits (344), Expect = 6.0e-33
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MANGCEI CEI+IAIL+PPLGVCL+HGCCT EF ICLILTLLGY+PGIIYALYAIV+VDR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DQFFDEYRRPLY 73
          DQFFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of Sed0000656 vs. TAIR 10
Match: AT2G24040.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-28
Identity = 55/72 (76.39%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MA+ CE+ CEI IAILLPP+GVCL+HGCCTVEF ICLILT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DQFFDEYRRPLY 73
          D++FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of Sed0000656 vs. TAIR 10
Match: AT4G30660.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 120.2 bits (300), Expect = 7.6e-28
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          M + CEI CEI+IAILLPPLGVC + GCCTVEF ICL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DQFFDEYRRPLYS 74
          +++FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of Sed0000656 vs. TAIR 10
Match: AT4G30660.2 (Low temperature and salt responsive protein family )

HSP 1 Score: 120.2 bits (300), Expect = 7.6e-28
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          M + CEI CEI+IAILLPPLGVC + GCCTVEF ICL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DQFFDEYRRPLYS 74
          +++FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of Sed0000656 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 103.2 bits (256), Expect = 9.6e-23
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILLPPLGVCLKHGCCTVEFCICLILTLLGYIPGIIYALYAIVFVDR 60
          MA+  E+FCEILIAILLPPLGVCLK GCCTVEF ICL+LT+LGYIPGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

The following BLAST results are available for this feature:

BLAST of Sed0000656 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938010.1	1.6e-32	89.74	UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >XP_022938011.1 UPF...	[more]
XP_022946545.1	1.6e-32	89.74	UPF0057 membrane protein At2g24040-like [Cucurbita moschata] >XP_022999789.1 UPF...	[more]
XP_022158160.1	2.8e-32	88.46	UPF0057 membrane protein At2g24040-like [Momordica charantia]	[more]
XP_022969587.1	1.4e-31	88.46	UPF0057 membrane protein At4g30660-like [Cucurbita maxima] >XP_022969588.1 UPF00...	[more]
XP_038890692.1	4.0e-31	88.46	UPF0057 membrane protein At4g30660-like [Benincasa hispida]	[more]

BLAST of Sed0000656 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82232	1.6e-27	76.39	UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 ...	[more]
Q9SUI0	1.1e-26	72.60	UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 ...	[more]
Q9M095	1.3e-21	80.33	UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 ...	[more]
Q9LRI7	4.1e-18	64.71	Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 S...	[more]
Q9ZNQ7	1.1e-10	72.92	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]

BLAST of Sed0000656 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBZ3	7.9e-33	89.74	UPF0057 membrane protein At4g30660-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KI35	7.9e-33	89.74	UPF0057 membrane protein At2g24040-like OS=Cucurbita maxima OX=3661 GN=LOC111494...	[more]
A0A6J1G463	7.9e-33	89.74	UPF0057 membrane protein At2g24040-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1DV17	1.3e-32	88.46	UPF0057 membrane protein At2g24040-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1HWQ4	6.7e-32	88.46	UPF0057 membrane protein At4g30660-like OS=Cucurbita maxima OX=3661 GN=LOC111468...	[more]

BLAST of Sed0000656 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28088.1	6.0e-33	87.50	Low temperature and salt responsive protein family	[more]
AT2G24040.1	1.2e-28	76.39	Low temperature and salt responsive protein family	[more]
AT4G30660.1	7.6e-28	72.60	Low temperature and salt responsive protein family	[more]
AT4G30660.2	7.6e-28	72.60	Low temperature and salt responsive protein family	[more]
AT4G30650.1	9.6e-23	80.33	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 8..56 e-value: 2.4E-17 score: 62.8
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..73
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 12..27
None	No IPR available	PANTHER	PTHR21659:SF93	BNAA03G50460D PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000656.1	Sed0000656.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane