Sed0000407 (gene) Chayote v1

Overview


Name	Sed0000407
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transmembrane emp24 domain-containing protein p24beta2
Location	LG04: 46114490 .. 46118218 (-)
RNA-Seq Expression	Sed0000407
Synteny	Sed0000407

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGAAACTTACAACTGCGCCACCGCGCAATTTGACCCCAAAAAACCTCTTTCCGATCTCTCAGATCAAACACACCCCAGAATCTCTCGCCCCCAATTCGCGGCAACTGTTTGTTCATCCCCAAATTTAGAGGTAATTTTACATACCCTTTTCATTTGTTGTTTGATTCTGCCTCAAATTGGTCAACACAGATCTTGAAGATTTGACTCTTTGTTTTGTATGATTCTTGTTGTTTTCCATATGGGTCTGTGATTTTTGAAGAAATGGAGCGATGGGCTACGAGATTTGTATTGATGATGGCGTTTGTGGGGGCATTGCTGTTGAATTTGAGAAAATCAGAAGGGATTAGGTTTGTGATTGACAGGGAAGAATGTTTCTCTCACGATGTTAAGTACGAGGGAGACACTGTTCATGTTTCTTTTGTTGTAATCAAAGCTGAATCTACATGGCATTATGGCGATGATGGTGTTGATCTTGTGGTATTCTTCTTTTCCTCCATTTCATTTGCTTATTTTTTTCTTTGCTTTAATTCGCTTGGTTTTTAAGAGGTAAAAAGTAAAAACTGGTATGAAAGATTCATGGGGTTTATTTTGTTTCTGTTGTTATCTGTTATCTTTGCGAAAAGGTGTTCAATTTAGGAAGTGGCTGCATGGTTCTTCTTGGGCAAGTACTTATCTTAGATTTAGAGGCAGGTAGATTTAACCATCATGGGAGTGGTCTAATGGTCAAGAGAGTCATAAGTAACTTAGAGGCGGTGAGTTCAATCTATAGTGACCACCTACCTGAGAGATCATTTCTTAAGTTTTTCCTTTATAGTCTCGATACGAAAACTAGAAGGAGGAGAGAGGCGTATCTTGGTATTAAGGTGGTAGGTACTGGGTTTTATACCTAATTTTGTGAAGATGCTTTGGTTTGGAAAGAGCAAGAGTCCTATTTTAGTAAGAGTTATGTCTTAGTTCTTGAAGTGCTAGAGGATTATGACTAAAAGACAGACTAAAATGAGTAGTTTTATCGTAGTTTTTTAAAGTTATTTTCTGGAAATGCTTTAGGTTATAGAGAAAAGGGGAGGGAGAGTGAAGGAGATGCTTTAATTTGTGGAGGGAGGGAGCCATCCAGATGATAAAAATTATTCCTTTATTGTCTTTGCTTATTAAATAATATTAAAGGATCTGTAGAAACACCTATCAAATTTAGATCTACTTAAATCGTGTTTCTTTTTATGCTCTAACTTCGACGCGATGGAAAACACATGGCAACATGAATTATACGTTGGCTATTAGAGATAAACATAAAGAACTAGAAGTTCTTTTGAGATGCTATATAATCTCTATCAGAATGGGGTGTGTTATACATAGTTCACATATCATCCTTAGATTCTATAATTGCAGTCATTCCTGTGCTAAATGATCGAGAAGCCTCGGGACACATGCATTGAAGTTGAGTTGGTTAATTTCTAAATGATTTAGTATTTTTTTTATAAGAAACAATTTGAGTGATGGTTGAAATTAAGGGCGAAAGCTCCAGGGAGCAAATTACAAAAGGCCTCTTGGATAGAAAAACTATAGTCTATAAATGATTTAGTGGTTAGGGGATAATATAGGGATTCTAGAGACTTTATCAATGTTTAAACCTAGTATAACATATGAAAAGTTTCGGCACTAGAAGAACGTAATGATCAACTCAGATTTTCTTTCCCCTAATTTTCTCTTCTTGCGGAGCTCTTATATGGGTTGGGTTTGACATCATTGTCTTATATTGCAACCATGAATGGTTCTAAAGAGTCAAAGACCTTAAGGAACCAAAAGGTTTAGGGTTTAATCTATGGTGGCCACCTACACAAGAATCATTTCCTACAAGTTTTCTTGACATAGGCATATTGTCCCATGAAAATTATCGAAGTGTGCGCAAACTAGTTCAGGCACTCTGTTGATATAAAAAGAATCCTTGTGTTGTATTGCTTTCGATTGTAGATTTTGATGTTAATTCCATACTGCTGTTTCTAGATCAAGGGCCCCACCGGTGATCATATTCATGATTTCCGTGACAAGACTAGTGAAAAGCATGAATTTGTTGCTCACAGCAAAGGCGTTCATCGATTCTGCTTTACAAACAAGTCTCCATACCACGAGACCATTGACTTCGATGTGCACGTCGGTCACTTTTCATATCATGAGCAACATGCAAAAGATGGTGAGATGCCTATTTCCTGTTTTATTATTTACTGACTGATCTTCCACAAGTTAAAATCAATCTCAAAACTGGTGCATATGTTTGCAGAGCATTTCAACCCTTTGCTGGATCACATATCTAAGTTGGAGGAAGCTCTTTACAATATTCAGTTTGAACAACATTGGTTAGAGGCTCAGACTGATCGCCAGGCAATAGGTAACGCAACATGTCTCTTTTTTTCTTTTTTTCTTTTTTTTTTTACGTAAGAAACCAAGCTTTCACTGAAAGAAATAAAATATAATATAAGGGCATCCGCATTAGGGAAAAAAACCAGTTAAACACCTACGAGGAGGCATTAAGCCTATCTAGGAACATGTCTTGAACTCTAGTAATTTCCTTAACATCAGCTTAGGAATTTATTTTCCTTGAAATTTTTCCTTGACATCGAGTGACTTCCATATCTAAACACATTAATTAAATGAAGTTTTAGGCATTATTCAAATTCATGCACCAATTCTCGTGAGTGTAGCTTTTTTTTTTAATCATTATGGAGTTTTCTGGATATTTGACTACATACCTGTGTAAGAAAATAATTAAGGTGCTGTTTGGGACCATGAAATGTTGTTCAAGAACAAAACAGTGACTGAACAATAGAATAACTGCAGAATAGCTAATGATGAACTTTTTTTTTTATTCAACAACATTGGGATGAGAAATTTGAACTCTCTTAGTCACTAGATTATTCATGTTACTAGAGCTAGCTCTCATTGGTAGCTAATGATGAACACTTTATAGAACGTACAGTTCTAGAAATGCCTAGTCTTTGATTACTCTAAATACATTCTTTTTTCAATCAAGAAGGGAAGCTTTCATGAATATATATATATATATACACACGTGCGAGGCATATGAAAATCGTCCCAAAAAAGGAATCCCAGAATAGAAGATATGCTTAATGAGAGTGCATACCTGACCACCCCATACTATTAAGATGATATCCAACCAAAAACCTCTGTAAATCGGAATTCGGTCACATTTCCTTTTCGATCTGAGCTCTGCAGATTAAAACGAGGAAAAAATGTCATAGATTGTTGGGTGATAAGTTTGTTGTATGTTTGGTTGCAGTGAATGAAGGAATGAGCAAAAGGGCAGTCCACAAGGCAATGTTTGAATCAGCAGCATTGATAGGGGCCAGTGTCCTCCAAGTCTACTTGCTGCAGCGCTTGTTTGAAAGGAAGCTGGGCACTTCCAGAGTTTAAAATATGCAACACTTTCCCCTTTTTACTTTAGCAACTTCTTCCTATTTATGGTTTTATCATATTGTGTATCATTTCCCATCACAGAAAGATAATATGCTAATTGGATTTCATATAAAATTTTCTTCTCTTTTGTTGCTTTGTTTCATAGGCAAAATTTATTTTCACTGTTCTTGACTCTGAATCAGTTGGGTGATAGATATCTGATAGTTTCGGAAAAAAGATTAATTTCTTTCTGTTTTGTGTGTACTTAAGTTTGGAGGCAACTTTTGTTTGTAGAAATTTATGGTTCCAATATTTCAAA

mRNA sequence

TTCGAAACTTACAACTGCGCCACCGCGCAATTTGACCCCAAAAAACCTCTTTCCGATCTCTCAGATCAAACACACCCCAGAATCTCTCGCCCCCAATTCGCGGCAACTGTTTGTTCATCCCCAAATTTAGAGAAATGGAGCGATGGGCTACGAGATTTGTATTGATGATGGCGTTTGTGGGGGCATTGCTGTTGAATTTGAGAAAATCAGAAGGGATTAGGTTTGTGATTGACAGGGAAGAATGTTTCTCTCACGATGTTAAGTACGAGGGAGACACTGTTCATGTTTCTTTTGTTGTAATCAAAGCTGAATCTACATGGCATTATGGCGATGATGGTGTTGATCTTGTGATCAAGGGCCCCACCGGTGATCATATTCATGATTTCCGTGACAAGACTAGTGAAAAGCATGAATTTGTTGCTCACAGCAAAGGCGTTCATCGATTCTGCTTTACAAACAAGTCTCCATACCACGAGACCATTGACTTCGATGTGCACGTCGGTCACTTTTCATATCATGAGCAACATGCAAAAGATGAGCATTTCAACCCTTTGCTGGATCACATATCTAAGTTGGAGGAAGCTCTTTACAATATTCAGTTTGAACAACATTGGTTAGAGGCTCAGACTGATCGCCAGGCAATAGTGAATGAAGGAATGAGCAAAAGGGCAGTCCACAAGGCAATGTTTGAATCAGCAGCATTGATAGGGGCCAGTGTCCTCCAAGTCTACTTGCTGCAGCGCTTGTTTGAAAGGAAGCTGGGCACTTCCAGAGTTTAAAATATGCAACACTTTCCCCTTTTTACTTTAGCAACTTCTTCCTATTTATGGTTTTATCATATTGTGTATCATTTCCCATCACAGAAAGATAATATGCTAATTGGATTTCATATAAAATTTTCTTCTCTTTTGTTGCTTTGTTTCATAGGCAAAATTTATTTTCACTGTTCTTGACTCTGAATCAGTTGGGTGATAGATATCTGATAGTTTCGGAAAAAAGATTAATTTCTTTCTGTTTTGTGTGTACTTAAGTTTGGAGGCAACTTTTGTTTGTAGAAATTTATGGTTCCAATATTTCAAA

Coding sequence (CDS)

ATGGAGCGATGGGCTACGAGATTTGTATTGATGATGGCGTTTGTGGGGGCATTGCTGTTGAATTTGAGAAAATCAGAAGGGATTAGGTTTGTGATTGACAGGGAAGAATGTTTCTCTCACGATGTTAAGTACGAGGGAGACACTGTTCATGTTTCTTTTGTTGTAATCAAAGCTGAATCTACATGGCATTATGGCGATGATGGTGTTGATCTTGTGATCAAGGGCCCCACCGGTGATCATATTCATGATTTCCGTGACAAGACTAGTGAAAAGCATGAATTTGTTGCTCACAGCAAAGGCGTTCATCGATTCTGCTTTACAAACAAGTCTCCATACCACGAGACCATTGACTTCGATGTGCACGTCGGTCACTTTTCATATCATGAGCAACATGCAAAAGATGAGCATTTCAACCCTTTGCTGGATCACATATCTAAGTTGGAGGAAGCTCTTTACAATATTCAGTTTGAACAACATTGGTTAGAGGCTCAGACTGATCGCCAGGCAATAGTGAATGAAGGAATGAGCAAAAGGGCAGTCCACAAGGCAATGTTTGAATCAGCAGCATTGATAGGGGCCAGTGTCCTCCAAGTCTACTTGCTGCAGCGCTTGTTTGAAAGGAAGCTGGGCACTTCCAGAGTTTAA

Protein sequence

MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAESTWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAVHKAMFESAALIGASVLQVYLLQRLFERKLGTSRV

Homology

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BLAST of Sed0000407 vs. NCBI nr
Match: KAA0059209.1 (emp24/gp25L/p24 family protein [Cucumis melo var. makuwa] >TYK19311.1 emp24/gp25L/p24 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 413.7 bits (1062), Expect = 9.7e-112
Identity = 197/214 (92.06%), Postives = 209/214 (97.66%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA RFV+MMAFVG LLLNLRKSEGIRFVIDREECFSH V+YEGDTVHVSFVVIKA+S
Sbjct: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHQVQYEGDTVHVSFVVIKADS 60

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGPTG+H+HDFRDKTSEKHEF+AH+KG+HRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPTGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPL+D ISKLEEALYNIQFEQHWLEAQTDRQAIVN+GMSKRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

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BLAST of Sed0000407 vs. NCBI nr
Match: XP_038887290.1 (transmembrane emp24 domain-containing protein p24beta2 [Benincasa hispida])

HSP 1 Score: 411.8 bits (1057), Expect = 3.7e-111
Identity = 196/214 (91.59%), Postives = 210/214 (98.13%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA RFV+MMAFVG LLLNLR+SEGIRFVIDREECFSH+V+YEGDTVHVSFVVIKA+S
Sbjct: 1   MERWAMRFVVMMAFVGVLLLNLRESEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGP+G+H+HDFRDKTSEKHEF+AH+KG+HRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPLLD ISKLEEALYNIQFEQHWLEAQTDRQAIVN+GMSKRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]

BLAST of Sed0000407 vs. NCBI nr
Match: XP_004144551.1 (transmembrane emp24 domain-containing protein p24beta2 [Cucumis sativus] >KGN43402.1 hypothetical protein Csa_020232 [Cucumis sativus])

HSP 1 Score: 409.8 bits (1052), Expect = 1.4e-110
Identity = 195/214 (91.12%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA RFV+MMAFVG LLL+LRKSEGIRFVIDREECFSH V+YEGDTVHVSFVVIKA+S
Sbjct: 1   MERWAMRFVMMMAFVGVLLLSLRKSEGIRFVIDREECFSHHVQYEGDTVHVSFVVIKADS 60

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGP+G+H+HDFRDKTSEKHEF+AH+KG+HRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPL+D ISKLEEALYNIQFEQHWLEAQTDRQAIVNEGM KRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMGKRAI 180

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]

BLAST of Sed0000407 vs. NCBI nr
Match: XP_023554617.1 (transmembrane emp24 domain-containing protein p24beta2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398.3 bits (1022), Expect = 4.2e-107
Identity = 191/214 (89.25%), Postives = 205/214 (95.79%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA R V+MMAF G LLLNLR+SEGIRFVIDREECFSH+V+Y+GDTVHVSFVVIK +S
Sbjct: 1   MERWAMRCVVMMAFAGVLLLNLRESEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYG+DGVDLVIKGP+G+H+HDFRDK SEKHEFVAH+KG+HRFCFTNKSPYHETIDFDV
Sbjct: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPLLD ISKLEEALYNIQFEQHWLEAQTDRQAIVN+GMSKRAV
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKL TSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 214

[Close]

BLAST of Sed0000407 vs. NCBI nr
Match: KAG6572216.1 (Transmembrane emp24 domain-containing protein p24beta2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 398.3 bits (1022), Expect = 4.2e-107
Identity = 191/214 (89.25%), Postives = 205/214 (95.79%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA R V+MMAF G LLLNLR+SEGIRFVIDREECFSH+V+Y+GDTVHVSFVVIK +S
Sbjct: 445 MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 504

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYG+DGVDLVIKGP+G+H+HDFRDK SEKHEFVAH+KG+HRFCFTNKSPYHETIDFDV
Sbjct: 505 GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 564

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPLLD ISKLEEALYNIQFEQHWLEAQTDRQAIVN+GMSKRAV
Sbjct: 565 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 624

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKL TSRV
Sbjct: 625 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 658

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BLAST of Sed0000407 vs. ExPASy Swiss-Prot
Match: Q9S7M9 (Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana OX=3702 GN=At3g07680 PE=1 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.9e-86
Identity = 153/197 (77.66%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 18  LLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAESTWHYGDDGVDLVIKGPT 77
           LL + + + GIRFVIDREECFSH  +YEGDT+HVSFVVIK++S WH+ +DGVDLVI GPT
Sbjct: 12  LLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPT 71

Query: 78  GDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHF 137
           G+ IHDFR++ S KH+FV   KGV+RFCFTNKSPYHETIDFDV +GHF+Y++QHAKDEHF
Sbjct: 72  GEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHF 131

Query: 138 NPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAVHKAMFESAALIGASVLQ 197
            PL++ ISKLEEALYNIQFEQHWLEAQTDRQAIVNE MSKRAVHKA+FES ALIGAS LQ
Sbjct: 132 TPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQ 191

Query: 198 VYLLQRLFERKLGTSRV 215
           VYLL+RLFERKLG SRV
Sbjct: 192 VYLLRRLFERKLGMSRV 208

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BLAST of Sed0000407 vs. ExPASy Swiss-Prot
Match: Q9LIL4 (Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana OX=3702 GN=At3g22845 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.0e-27
Identity = 72/215 (33.49%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLN-LRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAE 60
           MER   + + +   +G +LLN + +   +   ++ EEC    V YEGDTV  +FVV+  +
Sbjct: 1   MERRQAK-IHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 60

Query: 61  STWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFD 120
             W     G+D  +  P G+ +   +  + +K EF A   G+++FCF N     ET+ F 
Sbjct: 61  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 120

Query: 121 VHVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRA 180
           +HVGH       AKDEH +P+   I++L EAL ++  EQ +L+A+  R    NE   KR 
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 180

Query: 181 VHKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           +   + E   L  AS LQV  +++LF + +  +RV
Sbjct: 181 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

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BLAST of Sed0000407 vs. ExPASy TrEMBL
Match: A0A5D3D6W7 (Emp24/gp25L/p24 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00310 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.7e-112
Identity = 197/214 (92.06%), Postives = 209/214 (97.66%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA RFV+MMAFVG LLLNLRKSEGIRFVIDREECFSH V+YEGDTVHVSFVVIKA+S
Sbjct: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHQVQYEGDTVHVSFVVIKADS 60

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGPTG+H+HDFRDKTSEKHEF+AH+KG+HRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPTGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPL+D ISKLEEALYNIQFEQHWLEAQTDRQAIVN+GMSKRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]

BLAST of Sed0000407 vs. ExPASy TrEMBL
Match: A0A0A0K541 (GOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031630 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 6.8e-111
Identity = 195/214 (91.12%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA RFV+MMAFVG LLL+LRKSEGIRFVIDREECFSH V+YEGDTVHVSFVVIKA+S
Sbjct: 1   MERWAMRFVMMMAFVGVLLLSLRKSEGIRFVIDREECFSHHVQYEGDTVHVSFVVIKADS 60

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGP+G+H+HDFRDKTSEKHEF+AH+KG+HRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPL+D ISKLEEALYNIQFEQHWLEAQTDRQAIVNEGM KRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMGKRAI 180

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]

BLAST of Sed0000407 vs. ExPASy TrEMBL
Match: A0A6J1HZG1 (transmembrane emp24 domain-containing protein p24beta2 OS=Cucurbita maxima OX=3661 GN=LOC111468315 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 190/214 (88.79%), Postives = 205/214 (95.79%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA R V+MMAF G LLLNLR+SEG+RFVIDREECFSH+V+Y+GDTVHVSFVVIK +S
Sbjct: 1   MERWAMRRVVMMAFAGVLLLNLRQSEGLRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGP+G+H+HDFRDK SEKHEF+AH+KG+HRFCFTNKSPYHETIDFDV
Sbjct: 61  GWHYGDDGVDLVIKGPSGEHLHDFRDKASEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSYHEQHAKDEHFNPLLD ISKLEEALYNIQFEQHWLEAQTDRQAIVN+GMSKRAV
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKL TSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 214

[Close]

BLAST of Sed0000407 vs. ExPASy TrEMBL
Match: A0A6J1JPF1 (transmembrane emp24 domain-containing protein p24beta2-like OS=Cucurbita maxima OX=3661 GN=LOC111486518 PE=3 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.8e-107
Identity = 191/214 (89.25%), Postives = 202/214 (94.39%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA R V+MMAFVG LLLNLRKSEGIRFVIDREECFSH+V YEGDTVHVSFVVIKA+S
Sbjct: 1   MERWAMRCVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVLYEGDTVHVSFVVIKADS 60

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGP G+H+HD RDKTSEKHEFV H+KG+HRFCFTNKSPYHETIDFD+
Sbjct: 61  AWHYGDDGVDLVIKGPNGEHLHDVRDKTSEKHEFVVHNKGLHRFCFTNKSPYHETIDFDM 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSY EQHAKDEHFNPL+D ISKLEEALYNIQFEQHWLEAQTDRQ IVNE MSKRA+
Sbjct: 121 HVGHFSYQEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQEIVNEAMSKRAM 180

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]

BLAST of Sed0000407 vs. ExPASy TrEMBL
Match: A0A6J1EKQ0 (transmembrane emp24 domain-containing protein p24beta2-like OS=Cucurbita moschata OX=3662 GN=LOC111435219 PE=3 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.8e-107
Identity = 190/214 (88.79%), Postives = 203/214 (94.86%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAES 60
           MERWA R V+MMAFVG LLLNLR+SEGIRFVIDREECFSH+V+YEGDTVHVSFVVIKA+S
Sbjct: 1   MERWAMRCVVMMAFVGVLLLNLRRSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60

Query: 61  TWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGP G+H+HD RDKTSEKHEFV H+KG+HRFCFTNKSPYHETIDFD+
Sbjct: 61  AWHYGDDGVDLVIKGPNGEHLHDVRDKTSEKHEFVVHNKGLHRFCFTNKSPYHETIDFDM 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAV 180
           HVGHFSY EQHAKDEHFNPL+D ISKLEEALYNIQFEQHWLEAQTDRQ IVNE MSKRA+
Sbjct: 121 HVGHFSYQEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQEIVNEAMSKRAM 180

Query: 181 HKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAAL+GASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]

BLAST of Sed0000407 vs. TAIR 10
Match: AT3G07680.1 (emp24/gp25L/p24 family/GOLD family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.4e-87
Identity = 153/197 (77.66%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 18  LLLNLRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAESTWHYGDDGVDLVIKGPT 77
           LL + + + GIRFVIDREECFSH  +YEGDT+HVSFVVIK++S WH+ +DGVDLVI GPT
Sbjct: 12  LLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPT 71

Query: 78  GDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHF 137
           G+ IHDFR++ S KH+FV   KGV+RFCFTNKSPYHETIDFDV +GHF+Y++QHAKDEHF
Sbjct: 72  GEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHF 131

Query: 138 NPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRAVHKAMFESAALIGASVLQ 197
            PL++ ISKLEEALYNIQFEQHWLEAQTDRQAIVNE MSKRAVHKA+FES ALIGAS LQ
Sbjct: 132 TPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQ 191

Query: 198 VYLLQRLFERKLGTSRV 215
           VYLL+RLFERKLG SRV
Sbjct: 192 VYLLRRLFERKLGMSRV 208

[Close]

BLAST of Sed0000407 vs. TAIR 10
Match: AT3G22845.1 (emp24/gp25L/p24 family/GOLD family protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-28
Identity = 72/215 (33.49%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 1   MERWATRFVLMMAFVGALLLN-LRKSEGIRFVIDREECFSHDVKYEGDTVHVSFVVIKAE 60
           MER   + + +   +G +LLN + +   +   ++ EEC    V YEGDTV  +FVV+  +
Sbjct: 1   MERRQAK-IHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 60

Query: 61  STWHYGDDGVDLVIKGPTGDHIHDFRDKTSEKHEFVAHSKGVHRFCFTNKSPYHETIDFD 120
             W     G+D  +  P G+ +   +  + +K EF A   G+++FCF N     ET+ F 
Sbjct: 61  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 120

Query: 121 VHVGHFSYHEQHAKDEHFNPLLDHISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMSKRA 180
           +HVGH       AKDEH +P+   I++L EAL ++  EQ +L+A+  R    NE   KR 
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 180

Query: 181 VHKAMFESAALIGASVLQVYLLQRLFERKLGTSRV 215
           +   + E   L  AS LQV  +++LF + +  +RV
Sbjct: 181 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

The following BLAST results are available for this feature:

BLAST of Sed0000407 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059209.1	9.7e-112	92.06	emp24/gp25L/p24 family protein [Cucumis melo var. makuwa] >TYK19311.1 emp24/gp25...	[more]
XP_038887290.1	3.7e-111	91.59	transmembrane emp24 domain-containing protein p24beta2 [Benincasa hispida]	[more]
XP_004144551.1	1.4e-110	91.12	transmembrane emp24 domain-containing protein p24beta2 [Cucumis sativus] >KGN434...	[more]
XP_023554617.1	4.2e-107	89.25	transmembrane emp24 domain-containing protein p24beta2 [Cucurbita pepo subsp. pe...	[more]
KAG6572216.1	4.2e-107	89.25	Transmembrane emp24 domain-containing protein p24beta2, partial [Cucurbita argyr...	[more]

BLAST of Sed0000407 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7M9	1.9e-86	77.66	Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana O...	[more]
Q9LIL4	2.0e-27	33.49	Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana O...	[more]

BLAST of Sed0000407 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D6W7	4.7e-112	92.06	Emp24/gp25L/p24 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0K541	6.8e-111	91.12	GOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031630 PE=3 S...	[more]
A0A6J1HZG1	2.1e-107	88.79	transmembrane emp24 domain-containing protein p24beta2 OS=Cucurbita maxima OX=36...	[more]
A0A6J1JPF1	7.8e-107	89.25	transmembrane emp24 domain-containing protein p24beta2-like OS=Cucurbita maxima ...	[more]
A0A6J1EKQ0	7.8e-107	88.79	transmembrane emp24 domain-containing protein p24beta2-like OS=Cucurbita moschat...	[more]

BLAST of Sed0000407 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07680.1	1.4e-87	77.66	emp24/gp25L/p24 family/GOLD family protein	[more]
AT3G22845.1	1.4e-28	33.49	emp24/gp25L/p24 family/GOLD family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009038	GOLD domain	SMART	SM01190	EMP24_GP25L_2	coord: 27..206 e-value: 6.4E-40 score: 148.6
IPR009038	GOLD domain	PFAM	PF01105	EMP24_GP25L	coord: 34..206 e-value: 2.2E-31 score: 109.2
IPR009038	GOLD domain	PROSITE	PS50866	GOLD	coord: 35..122 score: 15.274813
None	No IPR available	PANTHER	PTHR22811:SF167	TMP21-RELATED PROTEIN-RELATED	coord: 9..210
IPR015720	Transmembrane emp24 domain-containing protein	PANTHER	PTHR22811	TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN	coord: 9..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000407.1	Sed0000407.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0030134	COPII-coated ER to Golgi transport vesicle
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane