Sed0000396 (gene) Chayote v1

Overview


Name	Sed0000396
Type	gene
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase
Location	LG03: 9906589 .. 9912237 (-)
RNA-Seq Expression	Sed0000396
Synteny	Sed0000396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTCATTTGAGTCTCCCAAAAAAGGGTAGATTGTGAGGTGAAGGTAGGCAATGGAGGCCTAAAGCTGACTGACTCTATCCCATAAAACCAATTTCACCCATTCTCTTCAATTCTCCAAACGCCGTCGTTTCCGCACTCTTCTGCTTCCACTCTCCGTCGGCGGTAGCTCAGTCCGGTGAGGTCCTCTTCTCCGGCCGGAATTAGTTTATTTCTCTTCATTTTTGTTCATAATCGCCAAATGATTTATGTATTTGCGTCTTTGAATGGTTTGGAATGGCTTCTTGTCTTCACAATCTAGGGTTTAGGGTTTGAATTGATGACTCATGTTGACGGCCGGTTGACTTGGGCGGATCATTTTAGTTTATGGCAGGATCAGTCAACGTCGTGGAGTTTGGGGTTTTGATCCGTGTACTTTTGGAAATTCAATTCGTATTTTGGTTCTGTTTGGATTTGTATTTTGCAATTTGTTTGAACACAGTGGTTGGAGCTGTGCATTTTTGTCTTTGTTTGTTTTGATTTGTTTATTTGATTCTGAGAAACTTGGGGAAATTTTGATGACTACGCTACGCCTCATAGGGGAGTTCAGTTCTTTAACAATCTTTCTTTGCTCTGATCTTTGTGTTAAACCTTTTAGTTTTTTTGTAGAAAAAAAGCTTTAGAGATTGTTCGTTAACGACTCGAGTAATGGAACTGTTTAGAAATGCCATATTGTTAGAATGAAAGGGCTTCTTCATCTCTCTTTTGTGATTTCTTTCCTTCATTCCTCGTATTCTTGTTTTTCTTTTTGCTGTGGCGGTTGTGGTTTTGAGGGGTTTATATATCTGTGAAAAACTAGAGGTATATTAATCTGATATCATGGGATGAAACTGTTATGAACTCACCACAACTCAACCTTGTAATAATGGTTTATGAAATGTTTTGTACATTACTTATTAATCTCTGAGTTTTTACTTTTCTATTTGAATTAGTTAATGAATGTTCTATTGTTGCATTTATTCTAATTAGTCGGGTTGGTGCTTTTTAAAAAAAAAAGAAAGAAAAAAAGAGGGTATGCTAGTTTAAGTTATTACTTAAAAATGTTTTTGTTCCCTTTTTTTTAAATTGTGCTCTGTGGAAGGTTAAATAATGTTTGAGCTGAATTCAGCTACCTCATAATCATTAAATTTCCTTCATTTGCTTAAAATTGTAAAAACACAAGTGTTTTCAAAATGCAATGCTTAGGAAAAAAGATCAATGCTTTTCTGTTTCGAGCCAGCAAGCATATGTAAATTGAATGGCAGAATTTACTGTGTAATTTATTTTTTCTTTTTAGCAGATTGAATTTGCTACTTGTCTCCATCTCTATGTACCTTGTGGTGTCTGCCAAATTGGGTTTCCGATTACGCCTTGACTGATGTATGCAGTTTATAACCAGATCAGAAGTGACATGTAGTGGGCCAAACACGGCAGCCTTTTTCTAGAGTTCTATGTTCTCTTTGTTTTTTATTGTGTTATTGGACTTAGATGGACGTTCCTTCAGTGGAGCTAAATTGTGAAAGCGAAGGAGACTCTTACCCTTTATTAATGGCACAGCCAGAAAATTTTAGCAGCAGTGAGCATATCATTGATATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGATAGGAATTCAAATGGTTTAAATTCATCACAGCCTGAGGATAGACCTTCAAGTAGTACACGGGTTTCCTCGTCTCAACCTTCAATTTCTACTACGGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGAAGTCGTAGAAGTCCATTGAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTACTGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGAATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTTTGCTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAGGAGTCTCTTCAATCCAGTCAGAATTCCACTCGCATTAATGTACCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGACATGGAAGAACTTCATCATCCTGTTCCATCCCCCAGAGGCAGTCAAAGGTTAGGAGTACTGACAGCAAAGTATGTTTTTTTATTTTTAATTTTATTATATATATAAATTATTGTACCAATATACTTCAATAATTTCTGCTATCTTGTAATTAACATGGAGTGACGTAGTGGTCAAAAGAGCCTTAAGTAACTAAGATGTAATGAATCCAATCTATGATGGTTACCTACGAGTTTCCTTTGCATCCAAATGTTTTTAGGGTGAGGCGGTATGTCCCATGACAATAGACAAGGTGCGTGTAAGCTGACCTAGTTAGTCATGAATAGCAAAAATAAAATCTGCTGTCTTGTGGCACTACTTTTAGATGTATCAATCTTTGGATTTTCAGTACACGTGATTAGTTCATGGATCTATACTTGCTGATAGCCATTTTTTCTTCTTATTATTTTAAAGAATTATGCACTGTCTAATTTTTAAAATCATGAAAGTAGAATCGAGAGAGAGAAAGGGAGATGATCTTTTCTTCGGGCATCTTTTATCATCTTTTTAATTCACATACTTTTGTCCCCAAGGGGTGGGACAATGGTTGAAGGCTTGAGGTTGGAAGGTGTGCTCTCCTCAAAATCCTAGGTTCAAGATTCACCTCTCGTGTTTTCGTTCCTTCGATGTCTCTTGGTGCTTGGCCTAGAAATGGGCATGGTTACCCTGGGTATAGTAGAGCAAAGCTCCAATTTCCTGGTTTCAAAAAAAAAAAAAAAGCACATACTTCAATTTTTGAACTATGCAGGAGATCCTAATTTCCATAGAATTTACATCTTATTAAAACTGTTAAATTAACCTCATAAGGGCGAGTGATGTGTCAACCTCATTCGGGCAGGTTGCCTGCCATGTTGACTGGATCACAGATTCACCATTACACGATTTATTTTATTTTAAAAAAAAATTCTGATAGTTGGACTTGGCTACCAAACATATGCCATAATTGCCATGGCCTTGACCCTGATTAAATATCAAATGCCTCTGATAATCATGATAAAGTGTGGCAGTGCCATGCTTACCGTAGTTGATCAATTCCTTGTTTCTTGATCTATTCTTGAGGCCTTTTTCCTGCCTTTTCTAGAAGTTGAGCAATAATTGCCCTGATAATTGAGACTTGTGGTAATTTTGACTGCAGATTAAAAGTATTGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTCGGTAACGTTTGGATCTTTGGCGGGCATACATCGGCCTCTGATGCACCTAATTTGTACAGGTCTGTGCTCTTATACCATTTATATGTTGAATGATGCACATTAGCGTTTCTAGAATGGATTTTATTAATTTCTCTATCTTTCTTTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATAGGTTATGCCATGCCCTTCATTCTCTGTGTAACCATCTGCTGTTGCCTACCTTGTTTAATTTCCATCCTCGGGTTTAGAGAGGACATGGCGCAGACCCGAGGAGCCACGACAGAATCTATTAATGCATTGCCGATATACAAGTTTAAGATGAAGAAGAGTAGAAATGGAGATGATAGAGAAAACAATTCCGGAGCAGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGTAAGTACAGTACAACCTGTTTTGGTAGTATCTGTTTCTTAGGCGATGTTTGGTAACGAGTTTGTATTCTATCTTTTATTTTTGAAAAATAATAACCATTCACCATTTAGTTTTTAGTTCTTACATTTGAAAAGCATTTTTGAAATTGTAGGTACTTTTTTTTAGATGTTTTTATAACAAACTTTTGCTTTTCAAAATATCAGTCTCTTTTGTATCATGAGTTTTTCCCTTTTTATTTCCTTAATGAAAAACTTGTTTTTTGTTATTATTATTTTTTAAAAATCTCTCTACAACCTTCCCTCCCTTGCACTTCTCAATTTAAAATATTTCCCTCTCTGTAGCATTTCTTTTCTCTCTTTTTCTCTATATAAAATTCTCCCTGTTCCCATCTTCAACATCTCTCTCATAACTTTTGTTTCCCTACTTATCTTTCTCACCCTCACTTTTTTTCCCTTACATCTCTCTAACTTTTCTTTCCCTCCTTAATGCCCAACTTTTTCTTAAAAAAAAAAAATACAGAAAAGATATAAAAATGTTTTTTTTAAAAACAGAAAACCCAAAATTTTAGCAGAAAAACCAAATACATTATTTGAGGAGACTTAATGATTAGGTTGTATACTGGTCGTTTTTCCTACTGTCTGCAAAACTAAATTTAATCTCAGTTTCTATTATCCATCATCACTTATTAGAATGAAGTTAGATGATTATTAGTGACTGACCCAGGGTCTTTTGGGGGTTCTTTTTGTGGAAGAAACCCTCCATGTTTCTTATTTAAAAAAGTGAGTTTTAGAATGATTTCTTGGACCATGTATTTTAGGGCGAAACACATTTTTATCATACACTTTTGACCAGGGTCTTGTTAAGAGACGAATCTGATAGATCCCGGATCTATTAATAACAAACCATCACAAACATACACGATAAGCCAAGTGATTCAAAATACTTGGACCCTCCCTAACTCTTGAGATCTCAAGCCCTATCTAAAATTCTCAGATAACTCCTCACTAACTCTTCCTACCTATTTATAATCATAATGTGTAATTAACCCTCTAACTAATTGCACTCGTGCCCCTAAAATATTCTTAATACTCTTAAAGGCCCAAACCTATCAGAATCCTTCCAGAAGTGAAATCTCACCTTATGCAACTCACCTGCCTGGATATACTTTTCCTTTTCATGATGATGGTTCCTGCGAGAGTTTTGACGAGACCCTAGTTCTGTTGCATTCTTGTAGCAATTATGTAATATGAAAACCAAACTCATACTAATTGCCTTGAAATAATGTGCAGGCCTGTTGCATCTGCTTGGCGAAATACGCTAACAATGATGAACTGAGAGAGTTGCCCTGTTCTCACTTCTTCCACAAAGAATGTGTGGATAAATGGTTGAAGATCAACGCGCTGTGCCCGCTTTGCAAAAACAACGTCGACGAGAGTAACAATGCCTCTATTGATGGGACAAACTGACAACAACATGGTGATTAGTTAGGGCAGCAGCTTGACTAAAGGACGTGTTTTGCGTGCATGTTCTCCGAATGGGATCTGCAAGAATTATGAAGTTTCGGTGATGCATGCGTAGTGTATGTACTAGCTCAACCTCGAGCAGCTTGTGGCATTCATTAGAGCCTTCTACAAGCTCCTCTCTTGTAGCAAATCCGTACATTGTCAATATAGGTGTTTATATGGCGTTTAGAATGAGTAGCAAGCAATCGGTTACCAATTGCTCATTTCTATAGGAACCGAAAATTGCAGATGTTGCAAGGTTTATACTTGTATAATCACACTCCTTTCTTGGATTGATTAGCCTCTTCAATTTTGTAGTACAATAGAGCTATTATAATAATTAATAGTAGAGCTTACTGTGTGAGGAC

mRNA sequence

CAGTCATTTGAGTCTCCCAAAAAAGGGTAGATTGTGAGGTGAAGGTAGGCAATGGAGGCCTAAAGCTGACTGACTCTATCCCATAAAACCAATTTCACCCATTCTCTTCAATTCTCCAAACGCCGTCGTTTCCGCACTCTTCTGCTTCCACTCTCCGTCGGCGGTAGCTCAGTCCGGTGAGGTCCTCTTCTCCGGCCGGAATTAGTTTATTTCTCTTCATTTTTGTTCATAATCGCCAAATGATTTATGTATTTGCGTCTTTGAATGGTTTGGAATGGCTTCTTGTCTTCACAATCTAGGGTTTAGGGTTTGAATTGATGACTCATGTTGACGGCCGGTTGACTTGGGCGGATCATTTTAGTTTATGGCAGGATCAGTCAACGTCGTGGAGTTTGGGGTTTTGATCCGTGTACTTTTGGAAATTCAATTCGTATTTTGGTTCTGTTTGGATTTGTATTTTGCAATTTGTTTGAACACAGTGGTTGGAGCTGTGCATTTTTGTCTTTGTTTGTTTTGATTTGTTTATTTGATTCTGAGAAACTTGGGGAAATTTTGATGACTACGCTACGCCTCATAGGGGAATTGAATTTGCTACTTGTCTCCATCTCTATGTACCTTGTGGTGTCTGCCAAATTGGGTTTCCGATTACGCCTTGACTGATGTATGCAGTTTATAACCAGATCAGAAGTGACATGTAGTGGGCCAAACACGGCAGCCTTTTTCTAGAGTTCTATGTTCTCTTTGTTTTTTATTGTGTTATTGGACTTAGATGGACGTTCCTTCAGTGGAGCTAAATTGTGAAAGCGAAGGAGACTCTTACCCTTTATTAATGGCACAGCCAGAAAATTTTAGCAGCAGTGAGCATATCATTGATATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGATAGGAATTCAAATGGTTTAAATTCATCACAGCCTGAGGATAGACCTTCAAGTAGTACACGGGTTTCCTCGTCTCAACCTTCAATTTCTACTACGGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGAAGTCGTAGAAGTCCATTGAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTACTGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGAATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTTTGCTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAGGAGTCTCTTCAATCCAGTCAGAATTCCACTCGCATTAATGTACCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGACATGGAAGAACTTCATCATCCTGTTCCATCCCCCAGAGGCAGTCAAAGATTAAAAGTATTGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTCGGTAACGTTTGGATCTTTGGCGGGCATACATCGGCCTCTGATGCACCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATAGGTTATGCCATGCCCTTCATTCTCTGTGTAACCATCTGCTGTTGCCTACCTTGTTTAATTTCCATCCTCGGGTTTAGAGAGGACATGGCGCAGACCCGAGGAGCCACGACAGAATCTATTAATGCATTGCCGATATACAAGTTTAAGATGAAGAAGAGTAGAAATGGAGATGATAGAGAAAACAATTCCGGAGCAGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGCCTGTTGCATCTGCTTGGCGAAATACGCTAACAATGATGAACTGAGAGAGTTGCCCTGTTCTCACTTCTTCCACAAAGAATGTGTGGATAAATGGTTGAAGATCAACGCGCTGTGCCCGCTTTGCAAAAACAACGTCGACGAGAGTAACAATGCCTCTATTGATGGGACAAACTGACAACAACATGGTGATTAGTTAGGGCAGCAGCTTGACTAAAGGACGTGTTTTGCGTGCATGTTCTCCGAATGGGATCTGCAAGAATTATGAAGTTTCGGTGATGCATGCGTAGTGTATGTACTAGCTCAACCTCGAGCAGCTTGTGGCATTCATTAGAGCCTTCTACAAGCTCCTCTCTTGTAGCAAATCCGTACATTGTCAATATAGGTGTTTATATGGCGTTTAGAATGAGTAGCAAGCAATCGGTTACCAATTGCTCATTTCTATAGGAACCGAAAATTGCAGATGTTGCAAGGTTTATACTTGTATAATCACACTCCTTTCTTGGATTGATTAGCCTCTTCAATTTTGTAGTACAATAGAGCTATTATAATAATTAATAGTAGAGCTTACTGTGTGAGGAC

Coding sequence (CDS)

ATGGACGTTCCTTCAGTGGAGCTAAATTGTGAAAGCGAAGGAGACTCTTACCCTTTATTAATGGCACAGCCAGAAAATTTTAGCAGCAGTGAGCATATCATTGATATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGATAGGAATTCAAATGGTTTAAATTCATCACAGCCTGAGGATAGACCTTCAAGTAGTACACGGGTTTCCTCGTCTCAACCTTCAATTTCTACTACGGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGAAGTCGTAGAAGTCCATTGAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTACTGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGAATGGATTGTGGGATATGCATCTGGATGTGGTGCCACCCTTCCTCTTCTTTGCTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAGGAGTCTCTTCAATCCAGTCAGAATTCCACTCGCATTAATGTACCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGACATGGAAGAACTTCATCATCCTGTTCCATCCCCCAGAGGCAGTCAAAGATTAAAAGTATTGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTCGGTAACGTTTGGATCTTTGGCGGGCATACATCGGCCTCTGATGCACCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATAGGTTATGCCATGCCCTTCATTCTCTGTGTAACCATCTGCTGTTGCCTACCTTGTTTAATTTCCATCCTCGGGTTTAGAGAGGACATGGCGCAGACCCGAGGAGCCACGACAGAATCTATTAATGCATTGCCGATATACAAGTTTAAGATGAAGAAGAGTAGAAATGGAGATGATAGAGAAAACAATTCCGGAGCAGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGCCTGTTGCATCTGCTTGGCGAAATACGCTAACAATGATGAACTGAGAGAGTTGCCCTGTTCTCACTTCTTCCACAAAGAATGTGTGGATAAATGGTTGAAGATCAACGCGCTGTGCCCGCTTTGCAAAAACAACGTCGACGAGAGTAACAATGCCTCTATTGATGGGACAAACTGA

Protein sequence

MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQPEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQIIAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNSTRINVPAGPFSLSVSRASDMEELHHPVPSPRGSQRLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFREDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAGTEKERVISGEDAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN

Homology

[Close]

BLAST of Sed0000396 vs. NCBI nr
Match: KAG6585434.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020355.1 E3 ubiquitin-protein ligase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 741.9 bits (1914), Expect = 3.0e-210
Identity = 377/420 (89.76%), Postives = 391/420 (93.10%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNCESE DSYPLLMAQPEN SSSEHII+ITGTGDSAPSSLPH RNSNGLNSSQ
Sbjct: 1   MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSSTRV SSQPSISTTGSNSRNSSFIRRGD+R RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSTRVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLSKNEKPRAPLF WIVGYASGCGATLPLL WRYRHRNQASEQ+SLQ SQNS 
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQPSQNSN 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGS-------QRLKVLVEYFKMGLDCFFAVW 240
           RINVPAGPFS+SVSRAS+ EELHHP PSPRGS        R+KVLVEYFKMGLDCFFA+W
Sbjct: 181 RINVPAGPFSVSVSRASEGEELHHPAPSPRGSVGSGLLTARVKVLVEYFKMGLDCFFAIW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGE-GGGVVAAGTEKERVISGE 360
           EDM QTRGATTESINALP YKFK+KKSR+GDDRENNSGAGE GGGVVAAGTEKERVISGE
Sbjct: 301 EDMTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGGVVAAGTEKERVISGE 360

Query: 361 DAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           DA CCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKN V ES   S++GTN
Sbjct: 361 DAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNEVGESIVGSLEGTN 420

[Close]

BLAST of Sed0000396 vs. NCBI nr
Match: XP_023537060.1 (E3 ubiquitin-protein ligase At1g63170-like [Cucurbita pepo subsp. pepo] >XP_023537061.1 E3 ubiquitin-protein ligase At1g63170-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 739.2 bits (1907), Expect = 1.9e-209
Identity = 375/420 (89.29%), Postives = 390/420 (92.86%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNCESE DSYPLLMAQPEN SSSEHII+ITGTGDSAPSSLPH RNSNGLNSSQ
Sbjct: 1   MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSSTRV SSQPSISTTGSNSRNSSFIRRGD+R RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSTRVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLSKNEKPRAPLF WIVGYASGCGATLPLL WRYRHRNQASEQ+SLQ SQNS 
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQPSQNSN 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGS-------QRLKVLVEYFKMGLDCFFAVW 240
           RINVPAGPFS+SVSRAS+ EELHHP PSPRGS        R+KVLVEYFKMGLDCFFA+W
Sbjct: 181 RINVPAGPFSVSVSRASEGEELHHPAPSPRGSVGSGLLTARVKVLVEYFKMGLDCFFAIW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGE-GGGVVAAGTEKERVISGE 360
           ED+ QTRGATTESINALP YKFK+KKSR+GDDRENNSGAGE GGGVVAAGTEKER ISGE
Sbjct: 301 EDLTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGGVVAAGTEKERAISGE 360

Query: 361 DAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           DA CCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKN V ES   S++GTN
Sbjct: 361 DAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNEVGESIVGSLEGTN 420

[Close]

BLAST of Sed0000396 vs. NCBI nr
Match: XP_022951236.1 (E3 ubiquitin-protein ligase At1g63170 [Cucurbita moschata] >XP_022951237.1 E3 ubiquitin-protein ligase At1g63170 [Cucurbita moschata])

HSP 1 Score: 738.8 bits (1906), Expect = 2.5e-209
Identity = 375/420 (89.29%), Postives = 390/420 (92.86%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNCESE DSYPLLMAQPEN SSSEHII+ITGTGDSAPSSLPH RNSNGLNSSQ
Sbjct: 1   MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSS RV SSQPSISTTGSNSRNSSFIRRGD+R RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSARVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLSKNEKPRAPLF WIVGYASGCGAT+PLL WRYRHRNQASEQ+SLQ SQNS 
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATVPLLYWRYRHRNQASEQDSLQPSQNSN 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGS-------QRLKVLVEYFKMGLDCFFAVW 240
           RINVPAGPFS+SVSRAS+ EELHHP PSPRGS        R+KVLVEYFKMGLDCFFA+W
Sbjct: 181 RINVPAGPFSVSVSRASEGEELHHPAPSPRGSVGSGLLTARVKVLVEYFKMGLDCFFAIW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGE-GGGVVAAGTEKERVISGE 360
           EDM QTRGATTESINALP YKFK+KKSR+GDDRENNSGAGE GGGVVAAGTEKERVISGE
Sbjct: 301 EDMTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGGVVAAGTEKERVISGE 360

Query: 361 DAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           DA CCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKN V ES   S++GTN
Sbjct: 361 DAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNEVGESIVGSLEGTN 420

[Close]

BLAST of Sed0000396 vs. NCBI nr
Match: XP_023002356.1 (E3 ubiquitin-protein ligase At1g63170 [Cucurbita maxima] >XP_023002357.1 E3 ubiquitin-protein ligase At1g63170 [Cucurbita maxima])

HSP 1 Score: 732.6 bits (1890), Expect = 1.8e-207
Identity = 373/420 (88.81%), Postives = 387/420 (92.14%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNCESE DSYPLLMAQPEN SSSEHII+ITGTGDSAPSSLPH RNSNGLNSSQ
Sbjct: 1   MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSSTRV SSQPSISTTGSNSRNSSFIRRGD+R RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSTRVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLSKNEKPRAPLF WIVGYASGCGATLPLL WRYRHRNQASEQ+SLQ S NS 
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQPSHNSN 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGS-------QRLKVLVEYFKMGLDCFFAVW 240
           RINVPAGPFS+SVSRAS+ EELHHP PS RGS        R+KVLVEYFKMGLDCFFA+W
Sbjct: 181 RINVPAGPFSVSVSRASEGEELHHPAPSTRGSVGSGLLTARVKVLVEYFKMGLDCFFAIW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGE-GGGVVAAGTEKERVISGE 360
           ED+ QTRGATTESINALP YKFK KKSR+GDDRENNSGAGE GGGVVAAGTEKERVISGE
Sbjct: 301 EDLTQTRGATTESINALPTYKFKQKKSRSGDDRENNSGAGEGGGGVVAAGTEKERVISGE 360

Query: 361 DAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           DA CCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCK  V ES   S++GTN
Sbjct: 361 DAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKTEVGESIIGSLEGTN 420

[Close]

BLAST of Sed0000396 vs. NCBI nr
Match: XP_022131375.1 (E3 ubiquitin-protein ligase At1g63170 [Momordica charantia] >XP_022131376.1 E3 ubiquitin-protein ligase At1g63170 [Momordica charantia] >XP_022131377.1 E3 ubiquitin-protein ligase At1g63170 [Momordica charantia] >XP_022131378.1 E3 ubiquitin-protein ligase At1g63170 [Momordica charantia])

HSP 1 Score: 732.3 bits (1889), Expect = 2.4e-207
Identity = 370/419 (88.31%), Postives = 389/419 (92.84%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNCESE DSYPLLMA+PENF SSEH+IDITGTGDS+ SSLPH RNSNGLNSSQ
Sbjct: 1   MDVPSVELNCESEEDSYPLLMARPENFDSSEHVIDITGTGDSS-SSLPHGRNSNGLNSSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSSTRV  SQPSIS+TGSNSRNSSFIRRGDAR RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSTRVPMSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLS++EKPRAPLF WIVGYASGCGATLPLL WRYRHRNQASEQ+SLQSSQNS+
Sbjct: 121 IAAIIVLSLSRDEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQNSS 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGSQ-------RLKVLVEYFKMGLDCFFAVW 240
           RINVPAGPFSLSVSR S+ EEL HP  SPRGSQ       RLKV+VEYFKMGLDCFFAVW
Sbjct: 181 RINVPAGPFSLSVSRTSEGEELQHPAQSPRGSQVSGVFTARLKVMVEYFKMGLDCFFAVW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAGTEKERVISGED 360
           ED+ QTRGATTESINALP YKFK+KKSR+GDDRENNSGAGEGGGVVAAGTEKERVISGED
Sbjct: 301 EDLTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGED 360

Query: 361 AACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           A CCICLAKYANNDELRELPCSHFFHK+CVDKWLKINALCPLCKN V ESN  S++G N
Sbjct: 361 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKNEVGESNTGSLEGEN 418

[Close]

BLAST of Sed0000396 vs. ExPASy Swiss-Prot
Match: Q8LDB8 (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-42
Identity = 113/312 (36.22%), Postives = 162/312 (51.92%), Query Frame = 0


Query: 109 ISIELLLTMSQIIAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRN--- 168
           + ++ +  ++ ++ A  VL LS +E P  PL  WI+GY   C   +  +C  YR RN   
Sbjct: 75  VVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRR 134

Query: 169 --QASEQESLQSSQNSTRINVPAGPFSLSVSRASDMEELHHPVPSPRGSQRLKVLVEYFK 228
               S + S  SS +S+ ++   G   L +SR SD   L         +   K L     
Sbjct: 135 RRDLSPRSSSSSSSSSSSMDEEEG---LGLSRNSDERYLELGQLENENNSFAKHLESANT 194

Query: 229 MGLDCFFAVWFVVGNVWI-FGGHTSASDAPNLYRLCIVFLTFS------CIGYAMPFILC 288
           M       +W+V+G  W+  GG   A  +P LY LCIVFL F       C+  A+  ++ 
Sbjct: 195 M----ISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCV--ALACVIG 254

Query: 289 VTICCCLPCLISILGFREDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGG 348
           + +CCCLPC+I++L     +A+  GA+ E I+ L  +KF+          +   G G+ G
Sbjct: 255 IAVCCCLPCIIAVL---YAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSG 314

Query: 349 GVVA-AGTEK--ERVISGEDAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALC 406
           GV+   GT+   E  +  EDA CCICL+ Y +  ELRELPC H FH  CVDKWL INA C
Sbjct: 315 GVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATC 374

[Close]

BLAST of Sed0000396 vs. ExPASy Swiss-Prot
Match: Q93Z92 (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-36
Identity = 130/418 (31.10%), Postives = 199/418 (47.61%), Query Frame = 0


Query: 28  SSSEHIIDITGTGDSAPSSLPHD---RNSNGLNSSQPEDRPSSSTRVSSSQPSISTTGSN 87
           SSS    + T   DS  SSLP      NS+G+  + P   P+ +  +S  + S     S 
Sbjct: 3   SSSSTTTNTTTESDS--SSLPTHIGRSNSDGIIDTTPFLPPTVTRTISVDEESNPIHRSA 62

Query: 88  SRN-----SSFIRR-GDARSRRSPL-------------NSGLW------ISIELLLTMSQ 147
            R      + F+R  G  R  R P                  W      + +++L  ++ 
Sbjct: 63  RRQGLREAARFLRHAGSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAF 122

Query: 148 IIAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNS 207
           +   + VL LS++EKP  PL  W+VGY   C   +  +C  YR R +    E        
Sbjct: 123 VAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRRHPE----DGGG 182

Query: 208 TRINVPAGPFSLSVSRASDMEELHHPVPSPRGSQRLKVLVEYFKMGLDCFFAVWFVVGNV 267
           + +   +    +S+++  D  E  +P              ++ +     F  +W+++G  
Sbjct: 183 SGLTNSSSQQYVSLAQLEDRGETSNP-------------AKHLESANTMFSFIWWIIGFY 242

Query: 268 WI-FGGHTSASDAPNLYRLCIVFLTFS------CIGYAMPFILCVTICCCLPCLISILGF 327
           W+  GG T +SD+P LY LCI+FL F       C+  A+  ++ + +CCCLPC+I+IL  
Sbjct: 243 WVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCV--ALACVIGLAVCCCLPCIIAIL-- 302

Query: 328 REDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAGTEK--ERVIS 387
              +A   GA+   I+ +P  KF+  K+ N    E  SG    G +   GT+   ER +S
Sbjct: 303 -YAVADQEGASKNDIDQMP--KFRFTKTGN---VEKLSGKAR-GIMTECGTDSPIERSLS 362

Query: 388 GEDAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASI 409
            EDA CCICL +Y +  ELRELPC+H FH  C+DKWL IN+ CPLCK N+ ++ N  +
Sbjct: 363 PEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKNANNEV 390

[Close]

BLAST of Sed0000396 vs. ExPASy Swiss-Prot
Match: Q9LN71 (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.5e-36
Identity = 121/392 (30.87%), Postives = 188/392 (47.96%), Query Frame = 0


Query: 41  DSAPSSLPHDRN--SNGLNSSQPEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARS 100
           D AP     D N  +NG    +         R ++   S +++G   R  S + R  A  
Sbjct: 26  DPAPLLFNGDDNEGNNGGGGGERRSVRRQGLREAARFLSRASSGRVMREPSMLVREAAAE 85

Query: 101 RRSPLNSGLW------ISIELLLTMSQIIAAITVLSLSKNEKPRAPLFEWIVGYASGCGA 160
           +     S  W      + ++++  ++ +  A  +L +S+ E P  PL  W++GYA  C  
Sbjct: 86  QLEERQSD-WAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVL 145

Query: 161 TLPLLCWRYRHRNQASEQESLQSSQNSTRINVPAGPFSLSVSRASDMEELHHPVPSPRGS 220
            +  +C  YR RN+       + +  +T    P    S S S +S +EE         G 
Sbjct: 146 HMVCVCVEYRRRNR-------RRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGV 205

Query: 221 QRLKV---------LVEYFKMGLDCFFAVWFVVGNVWI-FGGHTSASDAPNLYRLCIVFL 280
           Q L +         + ++ +     F  +W+++G  W+  GG   A ++P +Y L IVFL
Sbjct: 206 QDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFL 265

Query: 281 TFS------CIGYAMPFILCVTICCCLPCLISILGFREDMAQTRGATTESINALPIYKFK 340
            F       C+  A+  ++ + +CCCLPC+I++L     +A   GA+ E I  L   KFK
Sbjct: 266 GFDVFFVVFCV--ALACVIGIAVCCCLPCIIAVL---YAVADQEGASKEDIEQLT--KFK 325

Query: 341 MKKSRNGDDRENNSGAGEGGGVVA-AGTEK--ERVISGEDAACCICLAKYANNDELRELP 400
            +K  + +   N+   G   G++   GT+   E  +  EDA CCICL+ Y +  ELRELP
Sbjct: 326 FRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELP 385

Query: 401 CSHFFHKECVDKWLKINALCPLCKNNVDESNN 406
           C H FH  CVDKWL INA CPLCK N+ +S+N
Sbjct: 386 CGHHFHCSCVDKWLYINATCPLCKYNILKSSN 402

[Close]

BLAST of Sed0000396 vs. ExPASy Swiss-Prot
Match: Q8GUU2 (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.6e-31
Identity = 84/299 (28.09%), Postives = 144/299 (48.16%), Query Frame = 0


Query: 109 ISIELLLTMSQIIAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQAS 168
           ++ ++L   + ++A+  +L  +  E+P  P+  WI  Y   C   + L+   Y  RN   
Sbjct: 78  VAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTR 137

Query: 169 EQESLQSSQNSTRINVPAGPFSLSVSRASDMEELHHPVPSPRGSQRLKVLVEYFKMGLDC 228
               L+S  +          +++      D ++        +  + +  ++ +       
Sbjct: 138 RARDLESYDHE--------DYNIEYDYEQDSDDNSTTYSFVKRCESINTVISF------- 197

Query: 229 FFAVWFVVGNVWIF-GGHTSASDAPNLYRLCIVFLT----FSCIGYAMPFILCVTICCCL 288
              +W+++G  W+  GG     +APNLY L ++FL     F+     +  ++ + +CCCL
Sbjct: 198 ---IWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCL 257

Query: 289 PCLISILGFREDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAG- 348
           PC+I++L     +A T G +   +  LP+YKFK   S    + +N +G G+   +   G 
Sbjct: 258 PCIIALL---YAVAGTEGVSEAELGVLPLYKFKAFHS----NEKNITGPGKMVPIPINGL 317

Query: 349 -TEKERVISGEDAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNV 401
               ER +  EDA CCICL+ Y +  EL  LPC+H FH  C+ KWLK+ A CPLCK N+
Sbjct: 318 CLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351

[Close]

BLAST of Sed0000396 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-11
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 298 QTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAGTEKERVISGEDAACC 357
           ++RG     I A+PI+KFK +  +N             G     G E+E   S E   C 
Sbjct: 95  RSRGLDESVIRAIPIFKFKKRYDQN------------DGVFTGEGEEEEEKRSQE---CS 154

Query: 358 ICLAKYANNDELRELP-CSHFFHKECVDKWLKINALCPLCKNNV 401
           +CL+++ + ++LR +P CSH FH +C+D WL+ NA CPLC+  V
Sbjct: 155 VCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of Sed0000396 vs. ExPASy TrEMBL
Match: A0A6J1GH37 (E3 ubiquitin-protein ligase At1g63170 OS=Cucurbita moschata OX=3662 GN=LOC111454136 PE=4 SV=1)

HSP 1 Score: 738.8 bits (1906), Expect = 1.2e-209
Identity = 375/420 (89.29%), Postives = 390/420 (92.86%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNCESE DSYPLLMAQPEN SSSEHII+ITGTGDSAPSSLPH RNSNGLNSSQ
Sbjct: 1   MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSS RV SSQPSISTTGSNSRNSSFIRRGD+R RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSARVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLSKNEKPRAPLF WIVGYASGCGAT+PLL WRYRHRNQASEQ+SLQ SQNS 
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATVPLLYWRYRHRNQASEQDSLQPSQNSN 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGS-------QRLKVLVEYFKMGLDCFFAVW 240
           RINVPAGPFS+SVSRAS+ EELHHP PSPRGS        R+KVLVEYFKMGLDCFFA+W
Sbjct: 181 RINVPAGPFSVSVSRASEGEELHHPAPSPRGSVGSGLLTARVKVLVEYFKMGLDCFFAIW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGE-GGGVVAAGTEKERVISGE 360
           EDM QTRGATTESINALP YKFK+KKSR+GDDRENNSGAGE GGGVVAAGTEKERVISGE
Sbjct: 301 EDMTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGGVVAAGTEKERVISGE 360

Query: 361 DAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           DA CCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKN V ES   S++GTN
Sbjct: 361 DAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNEVGESIVGSLEGTN 420

[Close]

BLAST of Sed0000396 vs. ExPASy TrEMBL
Match: A0A6J1KJB2 (E3 ubiquitin-protein ligase At1g63170 OS=Cucurbita maxima OX=3661 GN=LOC111496220 PE=4 SV=1)

HSP 1 Score: 732.6 bits (1890), Expect = 8.8e-208
Identity = 373/420 (88.81%), Postives = 387/420 (92.14%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNCESE DSYPLLMAQPEN SSSEHII+ITGTGDSAPSSLPH RNSNGLNSSQ
Sbjct: 1   MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSSTRV SSQPSISTTGSNSRNSSFIRRGD+R RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSTRVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLSKNEKPRAPLF WIVGYASGCGATLPLL WRYRHRNQASEQ+SLQ S NS 
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQPSHNSN 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGS-------QRLKVLVEYFKMGLDCFFAVW 240
           RINVPAGPFS+SVSRAS+ EELHHP PS RGS        R+KVLVEYFKMGLDCFFA+W
Sbjct: 181 RINVPAGPFSVSVSRASEGEELHHPAPSTRGSVGSGLLTARVKVLVEYFKMGLDCFFAIW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGE-GGGVVAAGTEKERVISGE 360
           ED+ QTRGATTESINALP YKFK KKSR+GDDRENNSGAGE GGGVVAAGTEKERVISGE
Sbjct: 301 EDLTQTRGATTESINALPTYKFKQKKSRSGDDRENNSGAGEGGGGVVAAGTEKERVISGE 360

Query: 361 DAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           DA CCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCK  V ES   S++GTN
Sbjct: 361 DAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKTEVGESIIGSLEGTN 420

[Close]

BLAST of Sed0000396 vs. ExPASy TrEMBL
Match: A0A6J1BPC9 (E3 ubiquitin-protein ligase At1g63170 OS=Momordica charantia OX=3673 GN=LOC111004615 PE=4 SV=1)

HSP 1 Score: 732.3 bits (1889), Expect = 1.2e-207
Identity = 370/419 (88.31%), Postives = 389/419 (92.84%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNCESE DSYPLLMA+PENF SSEH+IDITGTGDS+ SSLPH RNSNGLNSSQ
Sbjct: 1   MDVPSVELNCESEEDSYPLLMARPENFDSSEHVIDITGTGDSS-SSLPHGRNSNGLNSSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSSTRV  SQPSIS+TGSNSRNSSFIRRGDAR RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSTRVPMSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLS++EKPRAPLF WIVGYASGCGATLPLL WRYRHRNQASEQ+SLQSSQNS+
Sbjct: 121 IAAIIVLSLSRDEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQNSS 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGSQ-------RLKVLVEYFKMGLDCFFAVW 240
           RINVPAGPFSLSVSR S+ EEL HP  SPRGSQ       RLKV+VEYFKMGLDCFFAVW
Sbjct: 181 RINVPAGPFSLSVSRTSEGEELQHPAQSPRGSQVSGVFTARLKVMVEYFKMGLDCFFAVW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAGTEKERVISGED 360
           ED+ QTRGATTESINALP YKFK+KKSR+GDDRENNSGAGEGGGVVAAGTEKERVISGED
Sbjct: 301 EDLTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGED 360

Query: 361 AACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           A CCICLAKYANNDELRELPCSHFFHK+CVDKWLKINALCPLCKN V ESN  S++G N
Sbjct: 361 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKNEVGESNTGSLEGEN 418

[Close]

BLAST of Sed0000396 vs. ExPASy TrEMBL
Match: A0A0A0LPE6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G379250 PE=4 SV=1)

HSP 1 Score: 729.2 bits (1881), Expect = 9.8e-207
Identity = 368/419 (87.83%), Postives = 389/419 (92.84%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNC+SEGDSYPLLMA+PE+ +SSEHIIDITG GDS PS LPH R+SNGLNSSQ
Sbjct: 1   MDVPSVELNCDSEGDSYPLLMARPEHSNSSEHIIDITGAGDSGPSGLPHGRSSNGLNSSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSSTRV  SQPS S+TGSNSRNSSFIRRGDAR RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSTRVPLSQPSTSSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLSKNEKPRAPLF WIVGYASGCGATLPLL WRYRHRNQASEQ+SLQSSQ+S+
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQSSS 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGSQ-------RLKVLVEYFKMGLDCFFAVW 240
           RINVPAGPFSLSVSRAS+ EEL HP PSPRGSQ       RLKVLVEYFKMGLDCFFAVW
Sbjct: 181 RINVPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVLSARLKVLVEYFKMGLDCFFAVW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAGTEKERVISGED 360
           ED++QTRGAT+ESINALP YKFK+KKSR+GDDRENNSGAGEGGGVVAAGTEKERVISGED
Sbjct: 301 EDLSQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGED 360

Query: 361 AACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           A CCICLAKYANNDELRELPCSHFFHK+CVDKWLKINALCPLCK  V ES   S++GTN
Sbjct: 361 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKAEVGESIVGSLEGTN 419

[Close]

BLAST of Sed0000396 vs. ExPASy TrEMBL
Match: A0A6J1EPN3 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita moschata OX=3662 GN=LOC111436240 PE=4 SV=1)

HSP 1 Score: 727.6 bits (1877), Expect = 2.8e-206
Identity = 368/419 (87.83%), Postives = 383/419 (91.41%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPHDRNSNGLNSSQ 60
           MDVPSVELNCESEGDSYPLLMAQPEN +SSEHIID+TGTGDS PSSLPH RNSNGLN SQ
Sbjct: 1   MDVPSVELNCESEGDSYPLLMAQPENSNSSEHIIDVTGTGDSTPSSLPHGRNSNGLNLSQ 60

Query: 61  PEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQI 120
           PEDRPSSST+V  SQPSIS+TGSNSRNSSFIRRGDAR RRSPLNSGLWISIELLLTMSQI
Sbjct: 61  PEDRPSSSTQVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQI 120

Query: 121 IAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNST 180
           IAAI VLSLSKNEKPRAPLF WIVGYASGCGATLPLL WRYRH NQASEQ SLQSSQNS+
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHHNQASEQGSLQSSQNSS 180

Query: 181 RINVPAGPFSLSVSRASDMEELHHPVPSPRGSQ-------RLKVLVEYFKMGLDCFFAVW 240
           RIN PAGPFSLSVSRAS+ EEL HP PSPRGSQ       R KVLVEY KMGLDCFFAVW
Sbjct: 181 RINAPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVVTGRFKVLVEYLKMGLDCFFAVW 240

Query: 241 FVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFR 300
           FVVGNVWIFGGH+SAS+APNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPC+ISILGFR
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 301 EDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAGTEKERVISGED 360
           E+  QTRGAT ESINALP YKFK+KKSR+GDDRENNSGAGEGGGVVAAGTEKERVISGED
Sbjct: 301 EEFTQTRGATAESINALPAYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGED 360

Query: 361 AACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNASIDGTN 413
           A CCICLAKYANNDELRELPCSHFFHK+CVDKWLKINALCPLCK  V ES  +S+DG N
Sbjct: 361 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESIISSLDGAN 419

[Close]

BLAST of Sed0000396 vs. TAIR 10
Match: AT4G32600.1 (RING/U-box superfamily protein )

HSP 1 Score: 483.8 bits (1244), Expect = 1.4e-136
Identity = 268/407 (65.85%), Postives = 307/407 (75.43%), Query Frame = 0


Query: 12  SEGDSYPLLMAQ-PE-NFSSSEH-IIDITGTGDSAPSSLPHDRNSNGLNSSQ-PEDRPSS 71
           ++ D++   M + PE N S +EH IIDI      A SS  HDR SN L   Q  E+RPS+
Sbjct: 14  NQADTFSRFMERSPENNLSRNEHIIIDIPRNAAIASSSSSHDRISNVLEPLQHEEERPST 73

Query: 72  STRVSSSQPSISTTGSNSRNSSFIRRGDARSRRSPLNSGLWISIELLLTMSQIIAAITVL 131
            + +++ QP+ +T  S+S   S  R    R RRSPLNSGLWISIEL LT+ QIIAAI VL
Sbjct: 74  VSPMAAPQPATATASSSSSMRSNPR--SVRRRRSPLNSGLWISIELFLTVGQIIAAIVVL 133

Query: 132 SLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNSTRINVPAG 191
           SLSK+E PRAPLF WIVGYA GC ATLPLL WRY H NQASEQ+   S Q+   +NV AG
Sbjct: 134 SLSKHEHPRAPLFTWIVGYACGCVATLPLLYWRYYHSNQASEQD---SGQHRPNLNVAAG 193

Query: 192 PFSLSVSRASDMEELHHPVPSPRGSQ--------RLKVLVEYFKMGLDCFFAVWFVVGNV 251
           PF+ S+SR S+ +       S RGS+        RLKV+VEYFKM LDCFFAVWFVVGNV
Sbjct: 194 PFAFSISRTSEADGRQTNTTSSRGSRYPGFISAARLKVIVEYFKMALDCFFAVWFVVGNV 253

Query: 252 WIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLISILGFREDMAQT 311
           WIFGGH+SA++APNLYRLC+VFLTFSCIGYAMPFILC TICCCLPC+ISILG+RED+ Q 
Sbjct: 254 WIFGGHSSAAEAPNLYRLCLVFLTFSCIGYAMPFILCTTICCCLPCIISILGYREDLTQP 313

Query: 312 RGATTESINALPIYKFKMKKSR-NGDDRENNSGAGEGGGVVAAGTEKERVISGEDAACCI 371
           RGAT ESINALP +KFK+KKSR NGDD  N S   E GGVVAAGT+ ER ISGEDA CCI
Sbjct: 314 RGATPESINALPTHKFKLKKSRSNGDD--NGSSTSE-GGVVAAGTDNERAISGEDAVCCI 373

Query: 372 CLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNN 406
           CLAKYANN+ELRELPCSHFFHKECVDKWLKINA CPLCK+ V E N+
Sbjct: 374 CLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEKNS 412

[Close]

BLAST of Sed0000396 vs. TAIR 10
Match: AT1G80400.1 (RING/U-box superfamily protein )

HSP 1 Score: 400.6 bits (1028), Expect = 1.5e-111
Identity = 229/419 (54.65%), Postives = 295/419 (70.41%), Query Frame = 0


Query: 1   MDVPSVELNCESEGDSYPLLMAQPENFSSSEHIIDITGTGDSAPSSLPH-DRNSNGLNSS 60
           MDV S+  N  +  D  PLLM    +  + EHI+DIT   +   SS    D  +   NS 
Sbjct: 1   MDVSSIVRN-TTLTDQDPLLM----DHGNREHIVDITSNDEEDSSSRSSLDELTPQGNSH 60

Query: 61  QPEDRPSSSTRVSSSQPSISTTGSNSRNSSFIRRGD---ARSRRSPLNSGLWISIELLLT 120
           Q E+   SS+  +   P+  +       SS  RRGD    R  RSPLNSGLWIS+EL++T
Sbjct: 61  QGEETVLSSSNATQQHPTHPSPPQQRPTSS--RRGDNGNGRRTRSPLNSGLWISVELVVT 120

Query: 121 MSQIIAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRNQASEQESLQSS 180
           ++QI+AAI V+ L+K+E P APLF W++GY  GC ATLP+L WR+R  N+A+ Q+S Q +
Sbjct: 121 VAQIVAAIVVMVLAKDEHPEAPLFTWVIGYTCGCLATLPILYWRFRTYNRATGQDSSQRA 180

Query: 181 QNSTRINVPAGPF-SLSVSRASDMEELHHPVPSPRGSQ-------RLKVLVEYFKMGLDC 240
             S++ N  + P+ ++SV++A+D E       +PR +Q       RL  LV++FKM +DC
Sbjct: 181 -TSSQGNSESTPYTAVSVAQAADEENSTGVSAAPRNNQVGESLRTRLNGLVDHFKMAIDC 240

Query: 241 FFAVWFVVGNVWIFGGHTSASDAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCLIS 300
           FFAVWFVVGNVWIFGGH+S SD+P LYRLCI FLTFSCIGYAMPFILC TICCCLPCLIS
Sbjct: 241 FFAVWFVVGNVWIFGGHSSPSDSPKLYRLCIAFLTFSCIGYAMPFILCATICCCLPCLIS 300

Query: 301 ILGFREDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGGGVVAAGTEKERV 360
           +LGFRE+ +QTRGAT E+INALP+Y+FK  KSRN  D E  S  GE GG +  G++K+R+
Sbjct: 301 VLGFRENFSQTRGATAEAINALPVYRFK-SKSRN--DLE-FSEEGE-GGFLLLGSQKKRL 360

Query: 361 ISGEDAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNNVDESNNAS 408
           ISGEDA+CCICL +Y +++++RELPCSH FH +CVDKWLKINA CPLCKN V ES++AS
Sbjct: 361 ISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLCKNEVGESSSAS 406

[Close]

BLAST of Sed0000396 vs. TAIR 10
Match: AT1G63170.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-43
Identity = 113/312 (36.22%), Postives = 162/312 (51.92%), Query Frame = 0


Query: 109 ISIELLLTMSQIIAAITVLSLSKNEKPRAPLFEWIVGYASGCGATLPLLCWRYRHRN--- 168
           + ++ +  ++ ++ A  VL LS +E P  PL  WI+GY   C   +  +C  YR RN   
Sbjct: 75  VVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRR 134

Query: 169 --QASEQESLQSSQNSTRINVPAGPFSLSVSRASDMEELHHPVPSPRGSQRLKVLVEYFK 228
               S + S  SS +S+ ++   G   L +SR SD   L         +   K L     
Sbjct: 135 RRDLSPRSSSSSSSSSSSMDEEEG---LGLSRNSDERYLELGQLENENNSFAKHLESANT 194

Query: 229 MGLDCFFAVWFVVGNVWI-FGGHTSASDAPNLYRLCIVFLTFS------CIGYAMPFILC 288
           M       +W+V+G  W+  GG   A  +P LY LCIVFL F       C+  A+  ++ 
Sbjct: 195 M----ISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCV--ALACVIG 254

Query: 289 VTICCCLPCLISILGFREDMAQTRGATTESINALPIYKFKMKKSRNGDDRENNSGAGEGG 348
           + +CCCLPC+I++L     +A+  GA+ E I+ L  +KF+          +   G G+ G
Sbjct: 255 IAVCCCLPCIIAVL---YAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSG 314

Query: 349 GVVA-AGTEK--ERVISGEDAACCICLAKYANNDELRELPCSHFFHKECVDKWLKINALC 406
           GV+   GT+   E  +  EDA CCICL+ Y +  ELRELPC H FH  CVDKWL INA C
Sbjct: 315 GVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATC 374

[Close]

BLAST of Sed0000396 vs. TAIR 10
Match: AT4G26580.1 (RING/U-box superfamily protein )

HSP 1 Score: 170.6 bits (431), Expect = 2.6e-42
Identity = 122/380 (32.11%), Postives = 187/380 (49.21%), Query Frame = 0


Query: 30  SEHIIDITGTGDSAPSSLPHDRNSNGLNSSQPEDRPSSSTRVSSSQPSISTTGSNSRNSS 89
           S  I  IT +  S+ +S   D N++    + PE  PSSS  +      ++   S +R   
Sbjct: 11  SSAINSITVSSSSSFASTQLDDNTH----TAPESSPSSSFFM-----RLAMRVSRARWFI 70

Query: 90  FIRR-----GDARS--RRSPLNSGLWISIELLLTMSQIIAAITVLSLSKNEKPRAPLFEW 149
           F+RR       +RS    +P NS  W+  EL+  + QI    + L+LSKNE+P  P+  W
Sbjct: 71  FLRRVFHYQNASRSDLGTNPFNSIAWMVSELIALLLQITVITSTLALSKNERPVWPMRLW 130

Query: 150 IVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNSTRINVPAGPFSLSVSRASDMEEL 209
           I GY  GC   L LL  RYR ++ + E                          A    ++
Sbjct: 131 ITGYNVGCLLNLMLLYGRYRQQDTSHE-------------------------NAFSFGDI 190

Query: 210 HHPVPSPRGSQRLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGH-TSASDAPNLYRLCIVF 269
                S   + R   L+   +  L+ FFA+WFV+GNVW+F     S   AP L+ LCI  
Sbjct: 191 EQQQRSREETTRCSHLMNKCRTSLELFFAIWFVIGNVWVFDSRFGSFHYAPILHVLCISL 250

Query: 270 LTFSCIGYAMPFILCVTICCCLPCLISILGFREDMAQT-RGATTESINALPIYKFKMKKS 329
           L ++ + Y+ PF+L + +CC +P + S LG+  ++  + +GA+ + I++LP +K+K+   
Sbjct: 251 LAWNALCYSFPFLLFLLLCCVVPLVSSFLGYNMNVGSSEKGASDDQISSLPSWKYKLIDE 310

Query: 330 RNGDDRENNSGAGEGGGVVAAGTEKERVISGEDAACCICLAKYANNDELRELPCSHFFHK 389
            +   + NN                       D  CCICLAKY   +E+R+LPCSH FH 
Sbjct: 311 TSDSSQANN-----------------------DPECCICLAKYKEKEEVRKLPCSHRFHL 333

Query: 390 ECVDKWLKINALCPLCKNNV 401
           +CVD+WL+I + CPLCK ++
Sbjct: 371 KCVDQWLRIISCCPLCKQDL 333

[Close]

BLAST of Sed0000396 vs. TAIR 10
Match: AT4G26580.2 (RING/U-box superfamily protein )

HSP 1 Score: 170.6 bits (431), Expect = 2.6e-42
Identity = 122/380 (32.11%), Postives = 187/380 (49.21%), Query Frame = 0


Query: 30  SEHIIDITGTGDSAPSSLPHDRNSNGLNSSQPEDRPSSSTRVSSSQPSISTTGSNSRNSS 89
           S  I  IT +  S+ +S   D N++    + PE  PSSS  +      ++   S +R   
Sbjct: 11  SSAINSITVSSSSSFASTQLDDNTH----TAPESSPSSSFFM-----RLAMRVSRARWFI 70

Query: 90  FIRR-----GDARS--RRSPLNSGLWISIELLLTMSQIIAAITVLSLSKNEKPRAPLFEW 149
           F+RR       +RS    +P NS  W+  EL+  + QI    + L+LSKNE+P  P+  W
Sbjct: 71  FLRRVFHYQNASRSDLGTNPFNSIAWMVSELIALLLQITVITSTLALSKNERPVWPMRLW 130

Query: 150 IVGYASGCGATLPLLCWRYRHRNQASEQESLQSSQNSTRINVPAGPFSLSVSRASDMEEL 209
           I GY  GC   L LL  RYR ++ + E                          A    ++
Sbjct: 131 ITGYNVGCLLNLMLLYGRYRQQDTSHE-------------------------NAFSFGDI 190

Query: 210 HHPVPSPRGSQRLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGH-TSASDAPNLYRLCIVF 269
                S   + R   L+   +  L+ FFA+WFV+GNVW+F     S   AP L+ LCI  
Sbjct: 191 EQQQRSREETTRCSHLMNKCRTSLELFFAIWFVIGNVWVFDSRFGSFHYAPILHVLCISL 250

Query: 270 LTFSCIGYAMPFILCVTICCCLPCLISILGFREDMAQT-RGATTESINALPIYKFKMKKS 329
           L ++ + Y+ PF+L + +CC +P + S LG+  ++  + +GA+ + I++LP +K+K+   
Sbjct: 251 LAWNALCYSFPFLLFLLLCCVVPLVSSFLGYNMNVGSSEKGASDDQISSLPSWKYKLIDE 310

Query: 330 RNGDDRENNSGAGEGGGVVAAGTEKERVISGEDAACCICLAKYANNDELRELPCSHFFHK 389
            +   + NN                       D  CCICLAKY   +E+R+LPCSH FH 
Sbjct: 311 TSDSSQANN-----------------------DPECCICLAKYKEKEEVRKLPCSHRFHL 333

Query: 390 ECVDKWLKINALCPLCKNNV 401
           +CVD+WL+I + CPLCK ++
Sbjct: 371 KCVDQWLRIISCCPLCKQDL 333

The following BLAST results are available for this feature:

BLAST of Sed0000396 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585434.1	3.0e-210	89.76	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_023537060.1	1.9e-209	89.29	E3 ubiquitin-protein ligase At1g63170-like [Cucurbita pepo subsp. pepo] >XP_0235...	[more]
XP_022951236.1	2.5e-209	89.29	E3 ubiquitin-protein ligase At1g63170 [Cucurbita moschata] >XP_022951237.1 E3 ub...	[more]
XP_023002356.1	1.8e-207	88.81	E3 ubiquitin-protein ligase At1g63170 [Cucurbita maxima] >XP_023002357.1 E3 ubiq...	[more]
XP_022131375.1	2.4e-207	88.31	E3 ubiquitin-protein ligase At1g63170 [Momordica charantia] >XP_022131376.1 E3 u...	[more]

BLAST of Sed0000396 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDB8	1.9e-42	36.22	E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g631...	[more]
Q93Z92	1.2e-36	31.10	E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g116...	[more]
Q9LN71	3.5e-36	30.87	E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g127...	[more]
Q8GUU2	2.6e-31	28.09	E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV...	[more]
Q9LSW9	1.3e-11	36.54	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]

BLAST of Sed0000396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GH37	1.2e-209	89.29	E3 ubiquitin-protein ligase At1g63170 OS=Cucurbita moschata OX=3662 GN=LOC111454...	[more]
A0A6J1KJB2	8.8e-208	88.81	E3 ubiquitin-protein ligase At1g63170 OS=Cucurbita maxima OX=3661 GN=LOC11149622...	[more]
A0A6J1BPC9	1.2e-207	88.31	E3 ubiquitin-protein ligase At1g63170 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A0A0LPE6	9.8e-207	87.83	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G379250 P...	[more]
A0A6J1EPN3	2.8e-206	87.83	E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Sed0000396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32600.1	1.4e-136	65.85	RING/U-box superfamily protein	[more]
AT1G80400.1	1.5e-111	54.65	RING/U-box superfamily protein	[more]
AT1G63170.1	1.4e-43	36.22	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT4G26580.1	2.6e-42	32.11	RING/U-box superfamily protein	[more]
AT4G26580.2	2.6e-42	32.11	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 356..396 e-value: 6.4E-7 score: 39.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 355..397 e-value: 6.7E-13 score: 48.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 356..397 score: 12.40076
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 340..411 e-value: 3.6E-19 score: 69.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..91
None	No IPR available	PANTHER	PTHR46225:SF2	C3H4 TYPE ZINC FINGER PROTEIN	coord: 1..405
None	No IPR available	PANTHER	PTHR46225	C3H4 TYPE ZINC FINGER PROTEIN	coord: 1..405
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 348..402

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000396.1	Sed0000396.1	mRNA
Sed0000396.2	Sed0000396.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding