Sed0000392 (gene) Chayote v1

Overview


Name	Sed0000392
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gag-protease polyprotein
Location	LG05: 11118332 .. 11119752 (+)
RNA-Seq Expression	Sed0000392
Synteny	Sed0000392

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGACCGCATGCATACAGGAACTACGCACAAGGTGTCACAAGTGGTATCAGAGCCCAGGTTATGGGAGATGAGTAAAGGTGTGAGGGTGATAATTTTTCCTTGCGTGCATGGAATTTGTTGAGTCAGCTTGACAAAGTCCTAAGTGTGTGGCAAGAAAGGATAGAGTGGGAAGGAAGTGTGTAGTGTGCGTATATGGCGTGTAATTATAGCGTGTAGCGTGAGGGTGTAGTGTGTAGTGTTTAACTGTTGTGTGTAGTGTGTATTTGTAGTGGTTGCGTGAAAGTGTAGTGTGAGTATATAATTATGCTATACCTTGTACTTAAAAAAAAACTAGCGAATGTGGTACTTATCGCAGGTATGACATCAAGAGGTAAAAAGTCTGGTGGTCGAGGATGAGGGAAGAGTGGAAAGAAGCAAGTAGCATTTGCGCCGATGCCGCTGGCCTCTATGGTGGGCAGTTAGTTGGGGGAGTTGACTACAGACCCACGAGTGGAGCCTGATCCAACTTTGGTAACAAGGAAGATGGAAGATCTTCAGAAGTTACTCGGATCTAGAGGAGTGGGACAACAAGCTTAAGAGGAACAAGACAAGAATTGTCTGACGGAGGGAACAAGGTACCTATGTGATTTTCGAAAGCATAATCCACCCACCTTCAATGGTAAAGAGACGGACTTGTCAGCAGTTGAGGCGTGGATCGTGGCGAAAGAAAGAATATTTCAATACTTAAGTTGTCCCAAGGAACACAAGGTGTACTGCGGTACCTTTATGTTGAGTGAACGAGCACTTCTGTGGTGGCGCTCAACTGAGAGATCTGTTGATGTGAGGGTCTGACCAATCACTTGGACTCAATGTAAGGAAGCTTTCTTTGCTAAGTACTATCCATTGGTGCTTAGGAATAGGAAGCAAATGGAGTTCTTACATCTTCAACAAAAGGAAAAGACAGTGGAGGATTATGAGATAGCGTTTACTGAATTAGGCAGGTATTACCCAGAATTGATAGACTCAGATGTCAAAAAAATTGAAAGGTGTATATTAGGATTGAGGGTTGAAATTCAGAGGACAATGGAAGCTTTGGCACCTTCAGATTATACTGCGGCAGTTAGAATAGCTTCTTTAATGGATGCACGGTATCATCTGACTGGAATGACAGCAGTAGGTCATAACCCGGACTTAAACCGGAAACAAAAAGTTGAGCAAGAAAACTACAAGCCACAGATGTTGGGACGAGGTCAGCAAAAAGGGTCGTTGACAAGCATAACAAAAGAAAAGTGGGTTGTAATATATGTGGAAAAACACATGGAGGACGATGTATGGCTAGCTCTTGATCATGTTTTAGATGTGGAAGAAATGGCCACCTCAGTCGAGAGCGTACCAATCCCAGAGTTTGTTATAAATGCGGGAAAAATGGGTATATAA

mRNA sequence

ATGATTGACCGCATGCATACAGGAACTACGCACAAGGTGTCACAAGTGGTATCAGAGCCCAGGAATAGGAAGCAAATGGAGTTCTTACATCTTCAACAAAAGGAAAAGACAGTGGAGGATTATGAGATAGCGTTTACTGAATTAGGCAGGTATTACCCAGAATTGATAGACTCAGATGTCAAAAAAATTGAAAGGTGTATATTAGGATTGAGGGTTGAAATTCAGAGGACAATGGAAGCTTTGGCACCTTCAGATTATACTGCGGCAGTTAGAATAGCTTCTTTAATGGATGCACGGTATCATCTGACTGGAATGACAGCAGTAGGTCATAACCCGGACTTAAACCGGAAACAAAAAGTTGAGCAAGAAAACTACAAGCCACAGATGTTGGGACGAGGTCAGCAAAAAGGGTCGTTGACAAGCATAACAAAAGAAAAGTGGGTTGTAATATATGTGGAAAAACACATGGAGGACGATGTATGGCTAGCTCTTGATCATGTTTTAGATGTGGAAGAAATGGCCACCTCAGTCGAGAGCGTACCAATCCCAGAGTTTGTTATAAATGCGGGAAAAATGGGTATATAA

Coding sequence (CDS)

ATGATTGACCGCATGCATACAGGAACTACGCACAAGGTGTCACAAGTGGTATCAGAGCCCAGGAATAGGAAGCAAATGGAGTTCTTACATCTTCAACAAAAGGAAAAGACAGTGGAGGATTATGAGATAGCGTTTACTGAATTAGGCAGGTATTACCCAGAATTGATAGACTCAGATGTCAAAAAAATTGAAAGGTGTATATTAGGATTGAGGGTTGAAATTCAGAGGACAATGGAAGCTTTGGCACCTTCAGATTATACTGCGGCAGTTAGAATAGCTTCTTTAATGGATGCACGGTATCATCTGACTGGAATGACAGCAGTAGGTCATAACCCGGACTTAAACCGGAAACAAAAAGTTGAGCAAGAAAACTACAAGCCACAGATGTTGGGACGAGGTCAGCAAAAAGGGTCGTTGACAAGCATAACAAAAGAAAAGTGGGTTGTAATATATGTGGAAAAACACATGGAGGACGATGTATGGCTAGCTCTTGATCATGTTTTAGATGTGGAAGAAATGGCCACCTCAGTCGAGAGCGTACCAATCCCAGAGTTTGTTATAAATGCGGGAAAAATGGGTATATAA

Protein sequence

MIDRMHTGTTHKVSQVVSEPRNRKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEALAPSDYTAAVRIASLMDARYHLTGMTAVGHNPDLNRKQKVEQENYKPQMLGRGQQKGSLTSITKEKWVVIYVEKHMEDDVWLALDHVLDVEEMATSVESVPIPEFVINAGKMGI

Homology

[Close]

BLAST of Sed0000392 vs. NCBI nr
Match: XP_022931734.1 (uncharacterized protein LOC111437896 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-09
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 21  RNRKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEA 80
           R++ Q  FL L+Q +KTVEDY++ F +L R+ PE + ++  KI+R I GLR+E+Q  +  
Sbjct: 202 RHKCQTAFLELKQGDKTVEDYDLEFNKLARFCPEYVSNEKMKIDRFIAGLRIELQGPVLV 261

Query: 81  LAPSDYTAAVRIASLMD 98
              SDY  A+R+A++MD
Sbjct: 262 QTTSDYAVALRVATVMD 278

[Close]

BLAST of Sed0000392 vs. NCBI nr
Match: XP_022931733.1 (uncharacterized protein LOC111437895 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-09
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 21  RNRKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEA 80
           R++ Q  FL L+Q +KTVEDY++ F +L R+ PE + ++  KI+R I GLR+E+Q  +  
Sbjct: 127 RHKCQTAFLELKQGDKTVEDYDLEFNKLARFCPEYVSNEKMKIDRFIAGLRIELQGPVLV 186

Query: 81  LAPSDYTAAVRIASLMD 98
              SDY  A+R+A++MD
Sbjct: 187 QTTSDYAVALRVATVMD 203

[Close]

BLAST of Sed0000392 vs. NCBI nr
Match: XP_022156662.1 (uncharacterized protein LOC111023512 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-09
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 23  RKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEALA 82
           RKQ+EFL+L+Q  ++VE+Y+  FT+L R+ PEL+D++  K ER I+ L+ E +  +  L+
Sbjct: 126 RKQVEFLNLKQDNRSVEEYDREFTKLSRFAPELVDTEATKCERFIIDLKDENKGFVATLS 185

Query: 83  PSDYTAAVRIASLMDAR 100
           P DY  A+R A+L+D R
Sbjct: 186 PPDYATALRTAALIDNR 202

[Close]

BLAST of Sed0000392 vs. NCBI nr
Match: XP_023522342.1 (uncharacterized protein LOC111786265, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 23  RKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEALA 82
           RKQ EF  L Q+ +TV  Y   F++L R+ PEL+++D K   R +LGL  +I+ T+EA+A
Sbjct: 99  RKQQEFTQLSQRGRTVTTYAREFSKLKRFAPELVNTDYKTARRFVLGLDTKIRNTVEAIA 158

Query: 83  PSDYTAAVRIASLMD 98
           P+ YTAA+R A  M+
Sbjct: 159 PTTYTAALRAAKAME 173

[Close]

BLAST of Sed0000392 vs. NCBI nr
Match: XP_038891712.1 (uncharacterized protein LOC120081110 [Benincasa hispida])

HSP 1 Score: 68.9 bits (167), Expect = 5.3e-08
Identity = 36/107 (33.64%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 21  RNRKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEA 80
           R  KQ EFL L+Q  ++VE+Y+  F  L R+ PEL+ ++  + ER I GL+  I+  ++A
Sbjct: 139 RYNKQREFLELRQGHRSVEEYDQEFDALSRFAPELVATEAMRAERFIQGLKESIRGIVQA 198

Query: 81  LAPSDYTAAVRIASLMDARYHLTGMTAVGHNPDLNRKQKVEQENYKP 128
             P+ +  A+R+A+ +D +         G  P   +K+K +Q+++KP
Sbjct: 199 FKPTTHVEALRLAAEVDPQSGDEFSLVFGAGPSSGQKRKADQKDFKP 245

[Close]

BLAST of Sed0000392 vs. ExPASy TrEMBL
Match: A0A6J1DSJ6 (uncharacterized protein LOC111023512 OS=Momordica charantia OX=3673 GN=LOC111023512 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 23  RKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEALA 82
           RKQ+EFL+L+Q  ++VE+Y+  FT+L R+ PEL+D++  K ER I+ L+ E +  +  L+
Sbjct: 126 RKQVEFLNLKQDNRSVEEYDREFTKLSRFAPELVDTEATKCERFIIDLKDENKGFVATLS 185

Query: 83  PSDYTAAVRIASLMDAR 100
           P DY  A+R A+L+D R
Sbjct: 186 PPDYATALRTAALIDNR 202

[Close]

BLAST of Sed0000392 vs. ExPASy TrEMBL
Match: A0A6J1EZJ9 (uncharacterized protein LOC111437895 OS=Cucurbita moschata OX=3662 GN=LOC111437895 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 21  RNRKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEA 80
           R++ Q  FL L+Q +KTVEDY++ F +L R+ PE + ++  KI+R I GLR+E+Q  +  
Sbjct: 127 RHKCQTAFLELKQGDKTVEDYDLEFNKLARFCPEYVSNEKMKIDRFIAGLRIELQGPVLV 186

Query: 81  LAPSDYTAAVRIASLMD 98
              SDY  A+R+A++MD
Sbjct: 187 QTTSDYAVALRVATVMD 203

[Close]

BLAST of Sed0000392 vs. ExPASy TrEMBL
Match: A0A6J1EV26 (Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111437896 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 21  RNRKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEA 80
           R++ Q  FL L+Q +KTVEDY++ F +L R+ PE + ++  KI+R I GLR+E+Q  +  
Sbjct: 202 RHKCQTAFLELKQGDKTVEDYDLEFNKLARFCPEYVSNEKMKIDRFIAGLRIELQGPVLV 261

Query: 81  LAPSDYTAAVRIASLMD 98
              SDY  A+R+A++MD
Sbjct: 262 QTTSDYAVALRVATVMD 278

[Close]

BLAST of Sed0000392 vs. ExPASy TrEMBL
Match: A0A5A7TFN8 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00180 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-08
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 21  RNRKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEA 80
           ++ K  EFL+L+Q + TVE Y+  F  L R+ P ++  +  + E+ + GLR+++Q  + A
Sbjct: 77  KHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPNVVRDEAARTEKFVRGLRLDLQGIVRA 136

Query: 81  LAPSDYTAAVRIASLMDARYHLTGMTAVGHNPDLNRKQKVE-QENYKPQ 129
           L P+ +  A+RIA  +     +    A G  P L +K+KVE Q N  PQ
Sbjct: 137 LRPATHADALRIALDLSLHERVDSSKAAGKGPALGQKRKVETQPNVIPQ 185

[Close]

BLAST of Sed0000392 vs. ExPASy TrEMBL
Match: A0A6J1FB78 (uncharacterized protein LOC111443845 OS=Cucurbita moschata OX=3662 GN=LOC111443845 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 21  RNRKQMEFLHLQQKEKTVEDYEIAFTELGRYYPELIDSDVKKIERCILGLRVEIQRTMEA 80
           R +KQ EFL ++Q  ++VE+YE  FT L R+ P ++  +  K+E  ++GLR +I+  +  
Sbjct: 57  RYKKQCEFLSIEQGNRSVEEYEREFTRLSRFAPLMVSMEELKVECFVMGLRPDIRGVVLT 116

Query: 81  LAPSDYTAAVRIASLMDARYHLTGMTAVGHNPDLNRKQKVEQ 123
             P DY  A+++A  +D + + T  T    N  +++K+K EQ
Sbjct: 117 HDPPDYATALQLAETLDVKEYPTEDTQTHPNTSVDQKRKREQ 158

The following BLAST results are available for this feature:

BLAST of Sed0000392 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931734.1	6.3e-09	44.16	uncharacterized protein LOC111437896 [Cucurbita moschata]	[more]
XP_022931733.1	6.3e-09	44.16	uncharacterized protein LOC111437895 [Cucurbita moschata]	[more]
XP_022156662.1	6.3e-09	45.45	uncharacterized protein LOC111023512 [Momordica charantia]	[more]
XP_023522342.1	1.1e-08	46.67	uncharacterized protein LOC111786265, partial [Cucurbita pepo subsp. pepo]	[more]
XP_038891712.1	5.3e-08	33.64	uncharacterized protein LOC120081110 [Benincasa hispida]	[more]

BLAST of Sed0000392 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0000392 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSJ6	3.1e-09	45.45	uncharacterized protein LOC111023512 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1EZJ9	3.1e-09	44.16	uncharacterized protein LOC111437895 OS=Cucurbita moschata OX=3662 GN=LOC1114378...	[more]
A0A6J1EV26	3.1e-09	44.16	Reverse transcriptase OS=Cucurbita moschata OX=3662 GN=LOC111437896 PE=4 SV=1	[more]
A0A5A7TFN8	4.4e-08	34.86	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A6J1FB78	5.8e-08	34.31	uncharacterized protein LOC111443845 OS=Cucurbita moschata OX=3662 GN=LOC1114438...	[more]

BLAST of Sed0000392 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 18..71 e-value: 9.2E-6 score: 25.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000392.1	Sed0000392.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity