Sed0000301 (gene) Chayote v1

Overview


Name	Sed0000301
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG05: 37493441 .. 37494056 (-)
RNA-Seq Expression	Sed0000301
Synteny	Sed0000301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCATCTCATTCATCTTTTCAAGAGCAGGAAGCCAGAACCAGATGAATTATTCAAAACCAATGACATCGACAATGCTTTCGATTGTCGTAACTTCGATGGTTGCTTCGAGCATCGTCTGGCTTCCAATGGCAATAGAACTAAACATTCCAACCTTTGGTGTGATGTCTGGCTGCATCAAGGGCTGCGTAACGTCATCCCCGAGTTTAACCCCTGGTTACTGCATGAGTGTTTGTCAAGGTGAGTTCGGTACACCGGGAGACCGGATCAGGGCTTCGTCTCATCATCATCCCGATCCCCATCTCCATCATGATCCTCATCACCATCACCATCACCATCACCATCCTCATCCTCGTCCTCGTCCTCATCTCCATCTCGGTCTCCATATCCATCTCCGTCCCCACGACCACACCAATGGCCATGCCCATGTACAAAACTAGATTGATTGGTGATTTTTTACATTCCCATTAATGGGAGTTTATATATGTTGCAACCATTTGAATTTCCCTGTGTGTACATATACCCATTTGCTTTGTTGTATGTGTTCTCAAATCTGCCTATTCTGTGTTAGCTTTCTTCTGTTTCTTTCATCCATTAACAAAATCAGTTAAGCTAAG

mRNA sequence

CACCATCTCATTCATCTTTTCAAGAGCAGGAAGCCAGAACCAGATGAATTATTCAAAACCAATGACATCGACAATGCTTTCGATTGTCGTAACTTCGATGGTTGCTTCGAGCATCGTCTGGCTTCCAATGGCAATAGAACTAAACATTCCAACCTTTGGTGTGATGTCTGGCTGCATCAAGGGCTGCGTAACGTCATCCCCGAGTTTAACCCCTGGTTACTGCATGAGTGTTTGTCAAGGTGAGTTCGGTACACCGGGAGACCGGATCAGGGCTTCGTCTCATCATCATCCCGATCCCCATCTCCATCATGATCCTCATCACCATCACCATCACCATCACCATCCTCATCCTCGTCCTCGTCCTCATCTCCATCTCGGTCTCCATATCCATCTCCGTCCCCACGACCACACCAATGGCCATGCCCATGTACAAAACTAGATTGATTGGTGATTTTTTACATTCCCATTAATGGGAGTTTATATATGTTGCAACCATTTGAATTTCCCTGTGTGTACATATACCCATTTGCTTTGTTGTATGTGTTCTCAAATCTGCCTATTCTGTGTTAGCTTTCTTCTGTTTCTTTCATCCATTAACAAAATCAGTTAAGCTAAG

Coding sequence (CDS)

ATGAATTATTCAAAACCAATGACATCGACAATGCTTTCGATTGTCGTAACTTCGATGGTTGCTTCGAGCATCGTCTGGCTTCCAATGGCAATAGAACTAAACATTCCAACCTTTGGTGTGATGTCTGGCTGCATCAAGGGCTGCGTAACGTCATCCCCGAGTTTAACCCCTGGTTACTGCATGAGTGTTTGTCAAGGTGAGTTCGGTACACCGGGAGACCGGATCAGGGCTTCGTCTCATCATCATCCCGATCCCCATCTCCATCATGATCCTCATCACCATCACCATCACCATCACCATCCTCATCCTCGTCCTCGTCCTCATCTCCATCTCGGTCTCCATATCCATCTCCGTCCCCACGACCACACCAATGGCCATGCCCATGTACAAAACTAG

Protein sequence

MNYSKPMTSTMLSIVVTSMVASSIVWLPMAIELNIPTFGVMSGCIKGCVTSSPSLTPGYCMSVCQGEFGTPGDRIRASSHHHPDPHLHHDPHHHHHHHHHPHPRPRPHLHLGLHIHLRPHDHTNGHAHVQN

Homology

[Close]

BLAST of Sed0000301 vs. NCBI nr
Match: KAG6591952.1 (hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024824.1 hypothetical protein SDJN02_13643, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 56/133 (42.11%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 1   MNYSKPMTSTMLSIVVTSMVASSIV-WLPMAIELNIPTFGVMSGCIKGCVTSSPSLTPGY 60
           MN +K  T   + IVVT MVA  IV  LPMA E  +P  G +S CI+GC  S   LT GY
Sbjct: 1   MNSTK-STPRRVLIVVTMMVALIIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTSGY 60

Query: 61  CMSVCQGEFGTPGDRIRASSHHHPDPHLHHDPHHHHHHHHHPHPRPRPHLHLG--LHIHL 120
           C+++C  EF             HP   L   PHHH H H H H R   H H+    H+H 
Sbjct: 61  CLTLCSAEF-------------HP---LSAHPHHHEHDHSHAHVRVDAHAHVDDHGHVHA 116

Query: 121 RPHDHTNGHAHVQ 131
             H H +GH H+Q
Sbjct: 121 HVHAHVDGHGHLQ 116

[Close]

BLAST of Sed0000301 vs. ExPASy Swiss-Prot
Match: Q8MP30 (Uncharacterized histidine-rich protein DDB_G0274557 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0274557 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.6e-04
Identity = 29/51 (56.86%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 80  HHHPDPHLHHDPHHHHHHHHHP--HPRPRPHLHLGLHIHLRPHDHTNGHAH 129
           HHH   H HH  HHHHHHHHHP  HP P PH H   H+H  PH H + H H
Sbjct: 134 HHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPH 184

The following BLAST results are available for this feature:

BLAST of Sed0000301 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591952.1	2.0e-06	42.11	hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0000301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8MP30	5.6e-04	56.86	Uncharacterized histidine-rich protein DDB_G0274557 OS=Dictyostelium discoideum ...	[more]

BLAST of Sed0000301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Sed0000301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000301.1	Sed0000301.1	mRNA