Sed0000277 (gene) Chayote v1

Overview
NameSed0000277
Typegene
OrganismSechium edule (Chayote v1)
DescriptionHistone H2A
LocationLG07: 5945038 .. 5948216 (+)
RNA-Seq ExpressionSed0000277
SyntenySed0000277
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGGAAAGGAGCCAAGGGTCTGATAATGGGCAAATCTGCTTCCAACAGCAACAAGGACAAGGACAAAAAGAAGCCCGTTTCTCGCTCTTCTCGCGCCGGTCTTCAGGTCTCTTTCATTTCACTTCAACACTTGTTTTTGTTACCTTCCCTTGATGGGTTTTGCGTGGATCTGTGTTTTCTCTTCTTGTTTCTAGTTTATGCTTCTTTTTACCCAACAAAGTCGCAATTTTTATCATTCACATGCCTTCCTAGGTTTTTTGGGGGTCTTTTTCGGTGAAAATTCTGTAATTTGAAGTTTATATTTGTTTATTTCTGATGGGTTTTGTTTTTTTCTTCTCGTGTTTCTGGTTTTGGTCTCTCTTGAAGAGTATGGTGATTTCTAAGTTCGTTTTCTTTGTGGGTTTTGCTTAGTGGAGCGGAATGAGTGTGAGATCGATTGTCGTTGATATTTTGGAGTGGTTGCCTGTGAATCTTAACAGGGGTAGCTTCTAAGTCTTTATCTTTGATGCTTGAAGTAGGTGCATGGCTTTGAATCTGTGGTATTTTGAAGGCGTTGACGTGATCCCCTGTGTTTCTTTTGCTAGTCTTGCTTTGTTAATGTTCTTAGGTGTTTAGTGAAGTTCTCCTGTGATTCGAGATGATAAAATGGTTGGAAAGAAAGAATGGCGACTTAGACAGATCTTTCCCCAAATATTTACTGATGTTCTTAGGTGATTAGGAATTGCTGTATTCATGAGTATAACATTGATTGTATGCATGATGCATACAAGGTCTTTCTCTCATGCTACTTAGGTTCTCGTGTTAGAAGATGTTCCTGGTGAATGTATTTGAGGTGGATTGGGATTTTAGAGTTTTTATTTTAGAACTTTCATGCTAGTAATTCATTGGTTCACAATTCTCGAGGCAATTGGGAAATTTGTTTGTTTACATGGTGCAAACTGCAAAGTACTTTGGTATCGGTTGAGTAATAGAAACTTTGGAATTGAACTAAATGTCGAATGGCGAGCTTGGAAATATAACGTAGTAAAGTACAGTAAATTATCTCTTAGAAATTTGAGAAACTGAATACTATTCTTAACAACCATTCAGTAACTAACTCTTTAGTCAATGTCTAATATCCTCAATATTCTTATAATATTTCTAACATTTTTTAATATTATGCGTTCACTTTTTTCTCAAGGTGTGTTTGACCATGGAAATTTAAAGAATTGTGTATAGAGAAAAATTATAGGTGTCATAAGTTTTTCTCCCTTCACTCTAGCGAAATTTAAGCCACTCCTTAAGTCCATCCTCCTGAAAATTTATAACAGAGTTGGCTGTTGCAAATAATTTATAATCGTAAGCTCAGTCCAGAGTTTAGTTTGCATATTCCTAGCCCTAGAACTCAACATGACCATGGTACTTGTATTATTTTTCAGCTTTTGTTAGTAAAGGTGTCTCTGACAATTCTTTCAAAATTCGGCCTATGGAGAGATGGCTGTGTCCGGGTGTCCCAAACCCATCAGCTCACGCCCTTGCTACAGCATCAACCATGCTTCTTCTAGCTTTTATTTGACCACACTTCCTTTACAGTTATACTTCCAACCACACTTTTCACTGGCTTAGGTGTCTTTTAGATATGTTCTCGTTTTCAACTACTATTGATCTTGCTTCTATTGCATTCTTTCTTGTTCCCCTGGCTTAATCAGACATCTATTCCATGCCACTCCATTCCTTGCCTTACTCTTTGTTGCTAGATGGTATGGGTTTTCTTGGCTTGTTATGGAGGTGGGTTTTATTATTAAAAGGTAGTTTTATAGCTCCTTTTTGGTGTAAGCTTTTGCTTTTACTCTCAATAAGATGAAAGATAGATTGTATGGAGCCTTATCTCATGATATTGGAGAGAATGTAGTGGGGTTTATCAATGCAGAACAAAAAGTATTCTCCTAATCAGGACTGAGAGAAAGGTCAAGAAGCCTAAACGGTGACCCATTTGAATTCTTAAGAGACTTATGTTTTGTCTTATTAATAGAGTCAAGCTGTTAGAGAATTTTAGAGTATGCTCAATCAAATGTTTTGTAGGAGTTTTGTTAGATTAGGGGGATTGGGGGTGTTTTTTCTTTGGAAGTAATTGCTGGTATTCTTTCATACAAAGTTTTTCCTTTGCCTAGACCTTCTCTTGGGTGAGCCAAATTTTGTGGAACTCTGGAACCTATTGAGTGACAAAGTTGTGGAAAAGTTTTGGTGATGGAAACTTGCATCTTTCATAATAGAAGACTAACGGAGATCCAAGCTGTTTTAACTTAACCTATATTCATGTACAAATTCTCTACAAGCATGGTGCTTATTGAAGAAATCATTATGAACTTTCAAATTTCAACGGCAAGGTCTGTAGTATTCCCCCTGTAACGTAACTCAGACGAAATTTGGAGATCTGGAAAGTATGGGAGTTTTTTTTCTGGTAAGTTGATACTTAAGTGCGTCCCCTAGGGGTTGCACAATGGTTGAAGATTTGGGCTTTGAGGGTATGTTTCCCTCGAGGTCTCAAGTTCGAGATTCAGCTGTGACATTACTCCTTCGATGTCTTTTGGTGCCTGGACTAGGGATGGGCGTGATTACCTTTGTTTAAAAAAAAAAGGTGATACTTAAGTGCGTTTTGCACGGTCTTGAAAACATACTTGAGTATTTTTCTCATGCTCCTTGGATTATTAAGTTAAACCCGTTCTCTCTAAGCACTTTTACGATTCTGAAAGTCTATTGACTTGTAAGCAAACTGGCGATGGTTGTTACTGTTTGTTATGTTAGAAATATCAATGCCTTTGGTGGAAGCAATTTCATTTTTCTATTGAATTTTTTCACACTTTCTCAATGATGGCGTTTGATGGCTTGGTGATGCAGTTTCCAGTGGGAAGGGTTCACCGGCAACTGAAAACAAGGGTTGCTGCGAACGGTCGTGTCGGGGCTACAGCAGCTGTATACACAGCAGCAATATTGGAGTACCTGACTGCCGAAGTGTTGGAGCTGGCCGGGAATGCGAGCAAGGATCTGAAGGTGAAGCGTATAACACCTAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAGCTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATGA

mRNA sequence

ATGTCGGGGAAAGGAGCCAAGGGTCTGATAATGGGCAAATCTGCTTCCAACAGCAACAAGGACAAGGACAAAAAGAAGCCCGTTTCTCGCTCTTCTCGCGCCGGTCTTCAGTTTCCAGTGGGAAGGGTTCACCGGCAACTGAAAACAAGGGTTGCTGCGAACGGTCGTGTCGGGGCTACAGCAGCTGTATACACAGCAGCAATATTGGAGTACCTGACTGCCGAAGTGTTGGAGCTGGCCGGGAATGCGAGCAAGGATCTGAAGGTGAAGCGTATAACACCTAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAGCTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATGA

Coding sequence (CDS)

ATGTCGGGGAAAGGAGCCAAGGGTCTGATAATGGGCAAATCTGCTTCCAACAGCAACAAGGACAAGGACAAAAAGAAGCCCGTTTCTCGCTCTTCTCGCGCCGGTCTTCAGTTTCCAGTGGGAAGGGTTCACCGGCAACTGAAAACAAGGGTTGCTGCGAACGGTCGTGTCGGGGCTACAGCAGCTGTATACACAGCAGCAATATTGGAGTACCTGACTGCCGAAGTGTTGGAGCTGGCCGGGAATGCGAGCAAGGATCTGAAGGTGAAGCGTATAACACCTAGGCATTTGCAGCTTGCAATCAGAGGAGATGAAGAGCTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATGA

Protein sequence

MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Homology
[Close]
BLAST of Sed0000277 vs. NCBI nr
Match: XP_022953233.1 (probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable histone H2A variant 3 [Cucurbita moschata] >XP_022991416.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023004192.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023513932.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >XP_023548701.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >KAG6593413.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014117.1 putative histone H2A variant 3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7025761.1 putative histone H2A variant 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSASN NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 134

[Close]
BLAST of Sed0000277 vs. NCBI nr
Match: XP_022152569.1 (probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable histone H2A variant 3 [Rhodamnia argentea] >XP_038899732.1 probable histone H2A variant 3 [Benincasa hispida] >KAF8011693.1 hypothetical protein BT93_J2080 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 247.7 bits (631), Expect = 5.8e-62
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSASN NKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 134

[Close]
BLAST of Sed0000277 vs. NCBI nr
Match: XP_010033915.1 (probable histone H2A variant 3 [Eucalyptus grandis] >XP_030464610.1 probable histone H2A variant 3 [Syzygium oleosum] >KCW53786.1 hypothetical protein EUGRSUZ_J03033 [Eucalyptus grandis])

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-61
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSASNS KDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSASNS-KDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 134

[Close]
BLAST of Sed0000277 vs. NCBI nr
Match: XP_004135834.1 (probable histone H2A variant 3 isoform X2 [Cucumis sativus] >XP_008461070.2 PREDICTED: probable histone H2A variant 3 [Cucumis melo] >KAA0058784.1 putative histone H2A variant 3 [Cucumis melo var. makuwa] >KGN45310.1 hypothetical protein Csa_015723 [Cucumis sativus] >TYK10578.1 putative histone H2A variant 3 [Cucumis melo var. makuwa])

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSA+N NKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSAAN-NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 134

[Close]
BLAST of Sed0000277 vs. NCBI nr
Match: XP_007202745.1 (probable histone H2A variant 3 [Prunus persica] >XP_008242708.1 PREDICTED: probable histone H2A variant 3 [Prunus mume] >XP_021817733.1 probable histone H2A variant 3 [Prunus avium] >XP_034225219.1 probable histone H2A variant 3 [Prunus dulcis] >PQQ20236.1 putative histone H2A variant 3 [Prunus yedoensis var. nudiflora] >ONH98225.1 hypothetical protein PRUPE_7G236800 [Prunus persica] >VVA10677.1 PREDICTED: histone [Prunus dulcis])

HSP 1 Score: 243.4 bits (620), Expect = 1.1e-60
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSASNSNKDKDKKKP+SRSSRAGLQFPVGR+HR LK R  ANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPISRSSRAGLQFPVGRIHRLLKQRTTANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKS+KE
Sbjct: 121 IPHIHKSLINKSTKE 135

[Close]
BLAST of Sed0000277 vs. ExPASy Swiss-Prot
Match: Q9C944 (Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-59
Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGK  S S+KDKDKKKP++RSSRAGLQFPVGRVHR LKTR  A+GRVGAT
Sbjct: 1   MSGKGAKGLIMGK-PSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKS+KE
Sbjct: 121 IPHIHKSLINKSAKE 134

[Close]
BLAST of Sed0000277 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.2e-59
Identity = 117/136 (86.03%), Postives = 131/136 (96.32%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKS-ASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K+ A+N +KDKDKKKP+SRS+RAG+QFPVGR+HRQLKTRV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 136
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of Sed0000277 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 7.7e-57
Identity = 118/137 (86.13%), Postives = 125/137 (91.24%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVG 60
           M+GKG KGL+  K  +A ++ KDK KK PVSRSSRAGLQFPVGR+HRQLK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKSSKE 136
           GVIPHIHKSLINKSSKE
Sbjct: 121 GVIPHIHKSLINKSSKE 137

[Close]
BLAST of Sed0000277 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56
Identity = 118/138 (85.51%), Postives = 130/138 (94.20%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNSNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKTRVAANGRV 60
           M+GKG KGL+  K  +A +++KDKDKKK PVSRSSRAGLQFPVGR+HRQLK+R +A+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKSSKE 136
           GGVIPHIHKSLINK+SKE
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]
BLAST of Sed0000277 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.0e-56
Identity = 117/139 (84.17%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSA---SNSNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKTRVAANGR 60
           M+GKG KGL+  K+    + ++KDKD+KK PVSRSSRAG+QFPVGR+HRQLK RV+ANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKSSKE 136
           GGGVIPHIHKSLINK++KE
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of Sed0000277 vs. ExPASy TrEMBL
Match: A0A6J1JQN2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.7e-63
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSASN NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 134

[Close]
BLAST of Sed0000277 vs. ExPASy TrEMBL
Match: A0A6J1GMV1 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.7e-63
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSASN NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 134

[Close]
BLAST of Sed0000277 vs. ExPASy TrEMBL
Match: A0A6J1DGE3 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.8e-62
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSASN NKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSASN-NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 134

[Close]
BLAST of Sed0000277 vs. ExPASy TrEMBL
Match: A0A059AJB9 (Histone H2A OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03033 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.8e-62
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSASNS KDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSASNS-KDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 134

[Close]
BLAST of Sed0000277 vs. ExPASy TrEMBL
Match: A0A5D3CH66 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.3e-62
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGKSA+N NKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGAT
Sbjct: 1   MSGKGAKGLIMGKSAAN-NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 134

[Close]
BLAST of Sed0000277 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 )

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61
Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLIMGK  S S+KDKDKKKP++RSSRAGLQFPVGRVHR LKTR  A+GRVGAT
Sbjct: 1   MSGKGAKGLIMGK-PSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 136
           IPHIHKSLINKS+KE
Sbjct: 121 IPHIHKSLINKSAKE 134

[Close]
BLAST of Sed0000277 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 227.6 bits (579), Expect = 5.8e-60
Identity = 117/136 (86.03%), Postives = 131/136 (96.32%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKS-ASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K+ A+N +KDKDKKKP+SRS+RAG+QFPVGR+HRQLKTRV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 136
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of Sed0000277 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 214.2 bits (544), Expect = 6.7e-56
Identity = 112/136 (82.35%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK-SASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K +A+ +NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 136
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Sed0000277 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 214.2 bits (544), Expect = 6.7e-56
Identity = 112/136 (82.35%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK-SASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K +A+ +NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 136
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Sed0000277 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 214.2 bits (544), Expect = 6.7e-56
Identity = 112/136 (82.35%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK-SASNSNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K +A+ +NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 136
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

The following BLAST results are available for this feature:
BLAST of Sed0000277 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022953233.12.0e-6299.26probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable his... [more]
XP_022152569.15.8e-6298.52probable histone H2A variant 3 [Momordica charantia] >XP_030526377.1 probable hi... [more]
XP_010033915.11.0e-6198.52probable histone H2A variant 3 [Eucalyptus grandis] >XP_030464610.1 probable his... [more]
XP_004135834.11.3e-6197.78probable histone H2A variant 3 isoform X2 [Cucumis sativus] >XP_008461070.2 PRED... [more]
XP_007202745.11.1e-6094.07probable histone H2A variant 3 [Prunus persica] >XP_008242708.1 PREDICTED: proba... [more]
BLAST of Sed0000277 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C9441.3e-5991.11Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1... [more]
O236288.2e-5986.03Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1[more]
Q84MP77.7e-5786.13Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
Q8H7Y81.3e-5685.51Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
Q8S8575.0e-5684.17Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g... [more]
BLAST of Sed0000277 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JQN29.7e-6399.26Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488055 PE=3 SV=1[more]
A0A6J1GMV19.7e-6399.26Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111455842 PE=3 SV=1[more]
A0A6J1DGE32.8e-6298.52Histone H2A OS=Momordica charantia OX=3673 GN=LOC111020264 PE=3 SV=1[more]
A0A059AJB94.8e-6298.52Histone H2A OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03033 PE=3 SV=1[more]
A0A5D3CH666.3e-6297.78Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002320 P... [more]
BLAST of Sed0000277 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G52740.19.0e-6191.11histone H2A protein 9 [more]
AT3G54560.15.8e-6086.03histone H2A 11 [more]
AT2G38810.16.7e-5682.35histone H2A 8 [more]
AT2G38810.36.7e-5682.35histone H2A 8 [more]
AT2G38810.26.7e-5682.35histone H2A 8 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 26..48
score: 73.0
coord: 71..84
score: 84.63
coord: 112..130
score: 51.98
coord: 56..71
score: 71.55
coord: 85..99
score: 65.78
IPR002119Histone H2ASMARTSM00414h2a4coord: 15..135
e-value: 2.2E-69
score: 246.5
IPR002119Histone H2ACDDcd00074H2Acoord: 27..131
e-value: 3.53455E-55
score: 166.742
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 15..104
e-value: 3.2E-20
score: 72.8
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 14..135
e-value: 2.3E-56
score: 191.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 6..112
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 105..134
e-value: 8.2E-11
score: 41.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availablePANTHERPTHR23430:SF300HISTONE H2Acoord: 2..133
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 2..133
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 34..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0000277.1Sed0000277.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0009266 response to temperature stimulus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity