Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACACTCAGTGCTCCCACAACAGTCACACAAATTGCTCTCTCTCCAATGGAAGAAACGCGGAAGAGGCACGATTTTGCTCCGGCGGACGGCACGACGCAGAAGAGGCCGAGAGCGGCGGCGGAAGAGGCGGAAGTTGTCGGCAGCGGCGGCGACGACGACGACGACATTCTGGCGTGGATCTCAGCGGAGGAGGAAACAGTGGGCGAGCTAATGATGCTTCTGGAGGAGGCGGAGAAGAGCCGGCCGACGGCGGAGAAGGTGAAGTTCATCGAGGATCCGTACTCGTCGGCGATGATTTTCCAATCGTCGTCGTCGTACGTAACGATCAACGGAAACGAAGAGAGTTGCGGATCGTCGTTCTCGGAGTCGGACTCGTCGGTGATGGCGAGCGTGGACATGAATGGAGCGATCAGGATGAACGTGACGGAGATCGATTCCGAAACAGTGGAGAAATGGAAGGCGGAAGAATCGTCGGAGAGATTGAGTTGGGATGAAGATGATTTAGCGAGATTCATCGGCGAAGAAGAAATGGCATTCTGAAAAGGAAACGGCTAGGGTTAGGGTTAGGGTTAGGGTTTATTGTGAAGAAGAAGAAGAAGAAGGTGAGGATTGAATTGTAATTTCGGGGGGTAAACACTGTGAATATAAAATATACACAGACAGAGTTAGAG
mRNA sequence
CACACTCAGTGCTCCCACAACAGTCACACAAATTGCTCTCTCTCCAATGGAAGAAACGCGGAAGAGGCACGATTTTGCTCCGGCGGACGGCACGACGCAGAAGAGGCCGAGAGCGGCGGCGGAAGAGGCGGAAGTTGTCGGCAGCGGCGGCGACGACGACGACGACATTCTGGCGTGGATCTCAGCGGAGGAGGAAACAGTGGGCGAGCTAATGATGCTTCTGGAGGAGGCGGAGAAGAGCCGGCCGACGGCGGAGAAGGTGAAGTTCATCGAGGATCCGTACTCGTCGGCGATGATTTTCCAATCGTCGTCGTCGTACGTAACGATCAACGGAAACGAAGAGAGTTGCGGATCGTCGTTCTCGGAGTCGGACTCGTCGGTGATGGCGAGCGTGGACATGAATGGAGCGATCAGGATGAACGTGACGGAGATCGATTCCGAAACAGTGGAGAAATGGAAGGCGGAAGAATCGTCGGAGAGATTGAGTTGGGATGAAGATGATTTAGCGAGATTCATCGGCGAAGAAGAAATGGCATTCTGAAAAGGAAACGGCTAGGGTTAGGGTTAGGGTTAGGGTTTATTGTGAAGAAGAAGAAGAAGAAGGTGAGGATTGAATTGTAATTTCGGGGGGTAAACACTGTGAATATAAAATATACACAGACAGAGTTAGAG
Coding sequence (CDS)
ATGGAAGAAACGCGGAAGAGGCACGATTTTGCTCCGGCGGACGGCACGACGCAGAAGAGGCCGAGAGCGGCGGCGGAAGAGGCGGAAGTTGTCGGCAGCGGCGGCGACGACGACGACGACATTCTGGCGTGGATCTCAGCGGAGGAGGAAACAGTGGGCGAGCTAATGATGCTTCTGGAGGAGGCGGAGAAGAGCCGGCCGACGGCGGAGAAGGTGAAGTTCATCGAGGATCCGTACTCGTCGGCGATGATTTTCCAATCGTCGTCGTCGTACGTAACGATCAACGGAAACGAAGAGAGTTGCGGATCGTCGTTCTCGGAGTCGGACTCGTCGGTGATGGCGAGCGTGGACATGAATGGAGCGATCAGGATGAACGTGACGGAGATCGATTCCGAAACAGTGGAGAAATGGAAGGCGGAAGAATCGTCGGAGAGATTGAGTTGGGATGAAGATGATTTAGCGAGATTCATCGGCGAAGAAGAAATGGCATTCTGA
Protein sequence
MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLEEAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGAIRMNVTEIDSETVEKWKAEESSERLSWDEDDLARFIGEEEMAF
Homology
BLAST of Sed0000223 vs. NCBI nr
Match:
XP_022965986.1 (uncharacterized protein LOC111465706 [Cucurbita maxima])
HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 127/170 (74.71%), Postives = 138/170 (81.18%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
MEETRKRHDF PA+ +TQKRPRAAA +V +DILAWIS EEETVGELMMLL+
Sbjct: 1 MEETRKRHDFVPAENSTQKRPRAAAAVEDV-------GNDILAWISVEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+AEKSRP AEKVKFI+DPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNG
Sbjct: 61 DAEKSRPMAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWK------AEESSERLSWDEDDLARFIGEEEMAF 165
A R+ + EIDS TVEKWK A SE SWDEDDLARFIG+EE F
Sbjct: 121 A-RIKLMEIDSATVEKWKLWKTEEASSVSEGFSWDEDDLARFIGDEEQIF 162
BLAST of Sed0000223 vs. NCBI nr
Match:
XP_023538157.1 (uncharacterized protein LOC111799012 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 222.2 bits (565), Expect = 3.2e-54
Identity = 127/170 (74.71%), Postives = 138/170 (81.18%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
MEETRKRHDF PA+ +TQKRPRAAA +V +DILAWIS EEETVGELMMLL+
Sbjct: 1 MEETRKRHDFVPAENSTQKRPRAAAAVEDV-------GNDILAWISVEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+AEKSRP AEKVKFI+DPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNG
Sbjct: 61 DAEKSRPMAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWK------AEESSERLSWDEDDLARFIGEEEMAF 165
A R+ + EIDS TVEKWK A SE SWDEDDLARFIG+EE F
Sbjct: 121 A-RIKLMEIDSATVEKWKLWKSEEASSVSEGSSWDEDDLARFIGDEEQIF 162
BLAST of Sed0000223 vs. NCBI nr
Match:
KAG6586479.1 (hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021338.1 hypothetical protein SDJN02_18027, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 221.9 bits (564), Expect = 4.2e-54
Identity = 127/170 (74.71%), Postives = 139/170 (81.76%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
MEETRKRHDF PA+ +TQKRPRAAA +V +DILAWIS EEETVGELMMLL+
Sbjct: 1 MEETRKRHDFVPAENSTQKRPRAAAAVEDV-------GNDILAWISVEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+AEKSRP AEKVKFI+DPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNG
Sbjct: 61 DAEKSRPMAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWKAEES------SERLSWDEDDLARFIGEEEMAF 165
A R+ + EIDS TVEKWK +S SE SWDEDDLARFIG+EE F
Sbjct: 121 A-RIKLMEIDSATVEKWKLWKSEEVSSISEGSSWDEDDLARFIGDEEQIF 162
BLAST of Sed0000223 vs. NCBI nr
Match:
XP_022938092.1 (uncharacterized protein LOC111444281 [Cucurbita moschata])
HSP 1 Score: 221.5 bits (563), Expect = 5.4e-54
Identity = 127/170 (74.71%), Postives = 138/170 (81.18%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
MEETRKRHDF PA+ +TQKRPRAAA +V +DILAWIS EEETVGELMMLL+
Sbjct: 1 MEETRKRHDFVPAENSTQKRPRAAAAVEDV-------GNDILAWISVEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+AEKSRP AEKVKFI+DPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNG
Sbjct: 61 DAEKSRPMAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWK------AEESSERLSWDEDDLARFIGEEEMAF 165
A R+ + EIDS TVEKWK A SE SWDEDDLARFIG+EE F
Sbjct: 121 A-RIKLMEIDSATVEKWKLWKSEEASSISEGSSWDEDDLARFIGDEEHIF 162
BLAST of Sed0000223 vs. NCBI nr
Match:
XP_038890889.1 (uncharacterized protein LOC120080324 [Benincasa hispida])
HSP 1 Score: 214.5 bits (545), Expect = 6.7e-52
Identity = 123/176 (69.89%), Postives = 139/176 (78.98%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
M+E+RKRH+F P + +T+KRPR A +EAE D DDDILAWIS EEETVGELMMLL+
Sbjct: 1 MDESRKRHEFVPPEASTEKRPRVAVKEAE------DVDDDILAWISVEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+ EKSRP EKVKFI+DPYSSA+IFQSSSSYVTINGNEESCGSSFSESDSS+MASVDMNG
Sbjct: 61 DVEKSRPMEEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWK---------AEESSERLS---WDEDDLARFIGEEEMAF 165
A R+ + EIDSETVEKWK EE+S L WDEDDLARFIG+EE F
Sbjct: 121 A-RIKLMEIDSETVEKWKLWSEDRLKEEEETSAVLDGFCWDEDDLARFIGDEEQIF 169
BLAST of Sed0000223 vs. ExPASy TrEMBL
Match:
A0A6J1HN50 (uncharacterized protein LOC111465706 OS=Cucurbita maxima OX=3661 GN=LOC111465706 PE=4 SV=1)
HSP 1 Score: 223.0 bits (567), Expect = 9.1e-55
Identity = 127/170 (74.71%), Postives = 138/170 (81.18%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
MEETRKRHDF PA+ +TQKRPRAAA +V +DILAWIS EEETVGELMMLL+
Sbjct: 1 MEETRKRHDFVPAENSTQKRPRAAAAVEDV-------GNDILAWISVEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+AEKSRP AEKVKFI+DPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNG
Sbjct: 61 DAEKSRPMAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWK------AEESSERLSWDEDDLARFIGEEEMAF 165
A R+ + EIDS TVEKWK A SE SWDEDDLARFIG+EE F
Sbjct: 121 A-RIKLMEIDSATVEKWKLWKTEEASSVSEGFSWDEDDLARFIGDEEQIF 162
BLAST of Sed0000223 vs. ExPASy TrEMBL
Match:
A0A6J1FD19 (uncharacterized protein LOC111444281 OS=Cucurbita moschata OX=3662 GN=LOC111444281 PE=4 SV=1)
HSP 1 Score: 221.5 bits (563), Expect = 2.6e-54
Identity = 127/170 (74.71%), Postives = 138/170 (81.18%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
MEETRKRHDF PA+ +TQKRPRAAA +V +DILAWIS EEETVGELMMLL+
Sbjct: 1 MEETRKRHDFVPAENSTQKRPRAAAAVEDV-------GNDILAWISVEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+AEKSRP AEKVKFI+DPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNG
Sbjct: 61 DAEKSRPMAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWK------AEESSERLSWDEDDLARFIGEEEMAF 165
A R+ + EIDS TVEKWK A SE SWDEDDLARFIG+EE F
Sbjct: 121 A-RIKLMEIDSATVEKWKLWKSEEASSISEGSSWDEDDLARFIGDEEHIF 162
BLAST of Sed0000223 vs. ExPASy TrEMBL
Match:
A0A5A7UZZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00520 PE=4 SV=1)
HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48
Identity = 119/177 (67.23%), Postives = 132/177 (74.58%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
MEE+R H+F + +T+KR R AAE D DDDILAWIS EEETVGELMMLL+
Sbjct: 1 MEESRNTHEFVRTEASTEKRQRPAAE---------DMDDDILAWISLEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+ EKSRP EKVKFIEDPYSSA+IFQSSSSYVTINGNEESCGSSFSESDSS+MASVDMNG
Sbjct: 61 DEEKSRPVEEKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWK--------AEESSER--------LSWDEDDLARFIGEEE 162
A R+ V EIDSETVEKWK EE E +SWDEDDLARF+G+EE
Sbjct: 121 A-RIKVMEIDSETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 167
BLAST of Sed0000223 vs. ExPASy TrEMBL
Match:
A0A5D3CG58 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00940 PE=4 SV=1)
HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48
Identity = 119/177 (67.23%), Postives = 132/177 (74.58%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
MEE+R H+F + +T+KR R AAE D DDDILAWIS EEETVGELMMLL+
Sbjct: 1 MEESRNTHEFVRTEASTEKRQRPAAE---------DMDDDILAWISLEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+ EKSRP EKVKFIEDPYSSA+IFQSSSSYVTINGNEESCGSSFSESDSS+MASVDMNG
Sbjct: 61 DEEKSRPVEEKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWK--------AEESSER--------LSWDEDDLARFIGEEE 162
A R+ V EIDSETVEKWK EE E +SWDEDDLARF+G+EE
Sbjct: 121 A-RIKVMEIDSETVEKWKMWSENGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 167
BLAST of Sed0000223 vs. ExPASy TrEMBL
Match:
A0A1S3CB71 (uncharacterized protein LOC103498512 OS=Cucumis melo OX=3656 GN=LOC103498512 PE=4 SV=1)
HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48
Identity = 119/177 (67.23%), Postives = 132/177 (74.58%), Query Frame = 0
Query: 1 MEETRKRHDFAPADGTTQKRPRAAAEEAEVVGSGGDDDDDILAWISAEEETVGELMMLLE 60
MEE+R H+F + +T+KR R AAE D DDDILAWIS EEETVGELMMLL+
Sbjct: 1 MEESRNTHEFVRTEASTEKRQRPAAE---------DMDDDILAWISLEEETVGELMMLLD 60
Query: 61 EAEKSRPTAEKVKFIEDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNG 120
+ EKSRP EKVKFIEDPYSSA+IFQSSSSYVTINGNEESCGSSFSESDSS+MASVDMNG
Sbjct: 61 DEEKSRPVEEKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNG 120
Query: 121 AIRMNVTEIDSETVEKWK--------AEESSER--------LSWDEDDLARFIGEEE 162
A R+ V EIDSETVEKWK EE E +SWDEDDLARF+G+EE
Sbjct: 121 A-RIKVMEIDSETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEE 167
BLAST of Sed0000223 vs. TAIR 10
Match:
AT5G56880.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 84.3 bits (207), Expect = 9.7e-17
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 0
Query: 48 EEETVGELMMLLEEAEKSRPTAE------------KVKFIEDPYSSAMIFQSSSSYVTIN 107
+E T E+M L+E + + T E +V+FI+DPY+ ++ QSSS Y+TIN
Sbjct: 33 DEYTPDEIMSLVESSSPTMTTTEIEGTNFSGEGSFRVRFIDDPYAMPVVVQSSSGYITIN 92
Query: 108 GNEESCGSSFSESDSSVMASVDMNGAIRMNVTEIDSETVEKWKAEE-SSERLSWDEDDLA 161
NEESCG SFS+SDSSVMASVD +G E +E W E + W++D LA
Sbjct: 93 VNEESCGPSFSDSDSSVMASVDASGLFGC-CFEYGNEKGGAWSTNEVRASEYEWNDDMLA 152
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022965986.1 | 1.9e-54 | 74.71 | uncharacterized protein LOC111465706 [Cucurbita maxima] | [more] |
XP_023538157.1 | 3.2e-54 | 74.71 | uncharacterized protein LOC111799012 [Cucurbita pepo subsp. pepo] | [more] |
KAG6586479.1 | 4.2e-54 | 74.71 | hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022938092.1 | 5.4e-54 | 74.71 | uncharacterized protein LOC111444281 [Cucurbita moschata] | [more] |
XP_038890889.1 | 6.7e-52 | 69.89 | uncharacterized protein LOC120080324 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1HN50 | 9.1e-55 | 74.71 | uncharacterized protein LOC111465706 OS=Cucurbita maxima OX=3661 GN=LOC111465706... | [more] |
A0A6J1FD19 | 2.6e-54 | 74.71 | uncharacterized protein LOC111444281 OS=Cucurbita moschata OX=3662 GN=LOC1114442... | [more] |
A0A5A7UZZ9 | 2.2e-48 | 67.23 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CG58 | 2.2e-48 | 67.23 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3CB71 | 2.2e-48 | 67.23 | uncharacterized protein LOC103498512 OS=Cucumis melo OX=3656 GN=LOC103498512 PE=... | [more] |
Match Name | E-value | Identity | Description | |
AT5G56880.1 | 9.7e-17 | 42.86 | unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter... | [more] |