Sed0000176 (gene) Chayote v1

Overview


Name	Sed0000176
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Hydroxyproline-rich glycoprotein family protein
Location	LG14: 19153808 .. 19154486 (+)
RNA-Seq Expression	Sed0000176
Synteny	Sed0000176

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTCTTCCGTCATCGGAGTTTCCGCCATTTCCGTTTGTCCCAACACCACATGACACACCCGAAATGGAGTCTCCCGACTTGCCGGCGCCGTACTCCGACGAGTGCCGACCCTCCCTAGGGTTCCCGCTGGGCACCGCTCTGCTCATTCTGGTCATCTTCTCCCTGAGCGGAATCTTCTCCTGCTTTTACCACTGGGACAAATTCTCTTCCCCCTCCCCTCCCAAATCCATCGTAATTTCACTCTGCTGCTTCTGAAATCAGGATCTCATTTCATTTTGATTTTGATTTTGATTTTGATTTTACTGCAGGATTTGGATAACGATCGGGGAGAGAGGTTGACGGTGGTCATGCCTGGGGATTTGGTTCCCAGATTTATTGCGATGCCGTGCCCTATAGCGCCGCCGCGGCCGGAGATCGTTGAGGTTAGGATCCAGAAGCCGCCGCCGCCGCCGTCCAAGCCGCCGCGAATTGCCGTTCCGTTCTATTAGGGTTTCTGATTCGATTCTGTGTGTGTTCCTTTCTATGAATGCCTTTTCGATTTCGATTTCTGTGTTTTACGAGCGATTTTGTTTCTGCACAGTTAACAAAACTTGCAATGGAGGAACAAAAACGTATGAATTGTGATTTTTAACCAGTTTTATTCTCCATTCATGTTTCCGGCATTAATATGTTTTTTT

mRNA sequence

CCACTCTTCCGTCATCGGAGTTTCCGCCATTTCCGTTTGTCCCAACACCACATGACACACCCGAAATGGAGTCTCCCGACTTGCCGGCGCCGTACTCCGACGAGTGCCGACCCTCCCTAGGGTTCCCGCTGGGCACCGCTCTGCTCATTCTGGTCATCTTCTCCCTGAGCGGAATCTTCTCCTGCTTTTACCACTGGGACAAATTCTCTTCCCCCTCCCCTCCCAAATCCATCGATTTGGATAACGATCGGGGAGAGAGGTTGACGGTGGTCATGCCTGGGGATTTGGTTCCCAGATTTATTGCGATGCCGTGCCCTATAGCGCCGCCGCGGCCGGAGATCGTTGAGGTTAGGATCCAGAAGCCGCCGCCGCCGCCGTCCAAGCCGCCGCGAATTGCCGTTCCGTTCTATTAGGGTTTCTGATTCGATTCTGTGTGTGTTCCTTTCTATGAATGCCTTTTCGATTTCGATTTCTGTGTTTTACGAGCGATTTTGTTTCTGCACAGTTAACAAAACTTGCAATGGAGGAACAAAAACGTATGAATTGTGATTTTTAACCAGTTTTATTCTCCATTCATGTTTCCGGCATTAATATGTTTTTTT

Coding sequence (CDS)

ATGGAGTCTCCCGACTTGCCGGCGCCGTACTCCGACGAGTGCCGACCCTCCCTAGGGTTCCCGCTGGGCACCGCTCTGCTCATTCTGGTCATCTTCTCCCTGAGCGGAATCTTCTCCTGCTTTTACCACTGGGACAAATTCTCTTCCCCCTCCCCTCCCAAATCCATCGATTTGGATAACGATCGGGGAGAGAGGTTGACGGTGGTCATGCCTGGGGATTTGGTTCCCAGATTTATTGCGATGCCGTGCCCTATAGCGCCGCCGCGGCCGGAGATCGTTGAGGTTAGGATCCAGAAGCCGCCGCCGCCGCCGTCCAAGCCGCCGCGAATTGCCGTTCCGTTCTATTAG

Protein sequence

MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSSPSPPKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPPPPPSKPPRIAVPFY

Homology

[Close]

BLAST of Sed0000176 vs. NCBI nr
Match: XP_022979056.1 (uncharacterized protein At5g65660-like [Cucurbita maxima])

HSP 1 Score: 150.6 bits (379), Expect = 8.3e-33
Identity = 78/129 (60.47%), Postives = 96/129 (74.42%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSP 60
           MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQFNPT 60

Query: 61  SP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPPPPPSK 116
           SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  PPRPE+VEV+++KPP PP  
Sbjct: 61  SPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEKPPKPP-- 120

[Close]

BLAST of Sed0000176 vs. NCBI nr
Match: XP_022133072.1 (uncharacterized protein At5g65660 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 77/133 (57.89%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKF------------- 60
           MESPD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK              
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL 60

Query: 61  ---SSPSP--PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPPP 116
              SSPS   P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  PPRPE+++V+++KPP 
Sbjct: 61  HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPP- 120

[Close]

BLAST of Sed0000176 vs. NCBI nr
Match: XP_023543383.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 77/129 (59.69%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSP 60
           MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQFNPT 60

Query: 61  SP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPPPPPSK 116
           SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  PPRPE+VEV+++KPP    K
Sbjct: 61  SPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEKPP----K 120

[Close]

BLAST of Sed0000176 vs. NCBI nr
Match: XP_023518276.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.3 bits (373), Expect = 4.1e-32
Identity = 76/136 (55.88%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKF------------- 60
           ME+PD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK              
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  ------SSPSP--PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQK 116
                 SSPS   P ++DL+ ++ E L+VVMPGD +P+FIAMPCP  PPRPE+++V+++K
Sbjct: 120 DHHLLPSSPSKSNPTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 179

[Close]

BLAST of Sed0000176 vs. NCBI nr
Match: XP_022949671.1 (uncharacterized protein At5g65660-like [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 76/128 (59.38%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSP 60
           MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQFNPT 60

Query: 61  SP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPPPPPSK 115
           SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  PPRPE+VEV+++KPP    K
Sbjct: 61  SPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEKPP----K 120

[Close]

BLAST of Sed0000176 vs. ExPASy Swiss-Prot
Match: Q9LSK9 (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-25
Identity = 65/132 (49.24%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 5   DLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS--------------- 64
           D   P+ D  RPSLGFPLGTALL+++IFSLSGIFSC YHWDK  S               
Sbjct: 6   DFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIE 65

Query: 65  -----PSPPKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPP-PP 116
                P PP   ++   +   + V+MPGD  P+FIA+PCP APPRPE + V +Q PP  P
Sbjct: 66  SNPYKPKPPFP-EMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQSP 125

[Close]

BLAST of Sed0000176 vs. ExPASy TrEMBL
Match: A0A6J1IPP8 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111478811 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.0e-33
Identity = 78/129 (60.47%), Postives = 96/129 (74.42%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSP 60
           MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQFNPT 60

Query: 61  SP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPPPPPSK 116
           SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  PPRPE+VEV+++KPP PP  
Sbjct: 61  SPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEKPPKPP-- 120

[Close]

BLAST of Sed0000176 vs. ExPASy TrEMBL
Match: A0A6J1BVL2 (uncharacterized protein At5g65660 OS=Momordica charantia OX=3673 GN=LOC111005755 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.2e-33
Identity = 77/133 (57.89%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKF------------- 60
           MESPD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK              
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQHPHL 60

Query: 61  ---SSPSP--PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPPP 116
              SSPS   P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  PPRPE+++V+++KPP 
Sbjct: 61  HLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEKPP- 120

[Close]

BLAST of Sed0000176 vs. ExPASy TrEMBL
Match: A0A6J1GCM8 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111452993 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.8e-32
Identity = 76/128 (59.38%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDK----------FSSP 60
           MESPD   P++D  RPSL FPLGTALL+LVIF+LSGIFSC YHWDK          F+  
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQFNPT 60

Query: 61  SP----PKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPPPPPSK 115
           SP    P S+DL+ ++ + L+V+MPGD +P+FIAMPCP  PPRPE+VEV+++KPP    K
Sbjct: 61  SPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEKPP----K 120

[Close]

BLAST of Sed0000176 vs. ExPASy TrEMBL
Match: A0A6J1HHX0 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111463125 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.9e-32
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS----------- 60
           ME+PD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK  S           
Sbjct: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60

Query: 61  -----PSPPK-----SIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQK 116
                PS P      ++DL+ ++ E L+VVMPGD +P+FIAMPCP  PPRPE++ V+++K
Sbjct: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120

[Close]

BLAST of Sed0000176 vs. ExPASy TrEMBL
Match: A0A6J1KQE2 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111497312 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MESPDLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS----------- 60
           ME+PD   P++D  RPSLGFPLGTALL+LVIF+LSGIFSC YHWDK  S           
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  -----PSPPK-----SIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQK 116
                PS P      ++DL+ ++ E L+VVMPGD +P+FIAMPCP  PPRPE+++V ++K
Sbjct: 120 DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVIVEK 179

[Close]

BLAST of Sed0000176 vs. TAIR 10
Match: AT5G65660.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-26
Identity = 65/132 (49.24%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 5   DLPAPYSDECRPSLGFPLGTALLILVIFSLSGIFSCFYHWDKFSS--------------- 64
           D   P+ D  RPSLGFPLGTALL+++IFSLSGIFSC YHWDK  S               
Sbjct: 6   DFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIE 65

Query: 65  -----PSPPKSIDLDNDRGERLTVVMPGDLVPRFIAMPCPIAPPRPEIVEVRIQKPP-PP 116
                P PP   ++   +   + V+MPGD  P+FIA+PCP APPRPE + V +Q PP  P
Sbjct: 66  SNPYKPKPPFP-EMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQSP 125

The following BLAST results are available for this feature:

BLAST of Sed0000176 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979056.1	8.3e-33	60.47	uncharacterized protein At5g65660-like [Cucurbita maxima]	[more]
XP_022133072.1	1.1e-32	57.89	uncharacterized protein At5g65660 [Momordica charantia]	[more]
XP_023543383.1	1.4e-32	59.69	uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo]	[more]
XP_023518276.1	4.1e-32	55.88	uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo]	[more]
XP_022949671.1	1.2e-31	59.38	uncharacterized protein At5g65660-like [Cucurbita moschata]	[more]

BLAST of Sed0000176 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSK9	3.9e-25	49.24	Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P...	[more]

BLAST of Sed0000176 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPP8	4.0e-33	60.47	uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114788...	[more]
A0A6J1BVL2	5.2e-33	57.89	uncharacterized protein At5g65660 OS=Momordica charantia OX=3673 GN=LOC111005755...	[more]
A0A6J1GCM8	5.8e-32	59.38	uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1HHX0	9.9e-32	55.15	uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KQE2	2.2e-31	55.15	uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114973...	[more]

BLAST of Sed0000176 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65660.1	2.7e-26	49.24	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..115
None	No IPR available	PANTHER	PTHR34291:SF12	PROTEIN, PUTATIVE-RELATED	coord: 1..104
IPR037699	Uncharacterized protein At5g65660-like	PANTHER	PTHR34291	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000176.1	Sed0000176.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane